Wall clock time and date at job start Wed Apr 1 2020 04:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00387 * 2 1 4 4 H 1.48495 * 109.47060 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47128 * 299.99699 * 3 2 1 6 6 H 1.48508 * 109.46998 * 59.99570 * 3 2 1 7 7 C 1.38810 * 119.99397 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00119 * 163.07622 * 7 2 1 9 9 N 1.36941 * 120.00338 * 343.07182 * 7 2 1 10 10 C 1.46925 * 120.63057 * 331.85016 * 9 7 2 11 11 C 1.53192 * 108.77952 * 233.58803 * 10 9 7 12 12 C 1.53044 * 109.31136 * 305.36669 * 11 10 9 13 13 C 1.52997 * 109.46160 * 181.38512 * 12 11 10 14 14 C 1.52998 * 109.47044 * 174.97038 * 13 12 11 15 15 N 1.46505 * 109.47060 * 179.97438 * 14 13 12 16 16 C 1.34773 * 119.99906 * 180.27648 * 15 14 13 17 17 O 1.21562 * 119.99941 * 359.72282 * 16 15 14 18 18 C 1.47723 * 119.99854 * 179.73222 * 16 15 14 19 19 C 1.40114 * 120.34966 * 359.97438 * 18 16 15 20 20 N 1.31263 * 121.14952 * 179.97438 * 19 18 16 21 21 C 1.32725 * 121.79721 * 0.03346 * 20 19 18 22 22 N 1.37118 * 133.40249 * 179.97438 * 21 20 19 23 23 H 0.97000 * 126.58754 * 0.02591 * 22 21 20 24 24 N 1.40190 * 106.81533 * 179.97438 * 22 21 20 25 25 N 1.28660 * 109.51296 * 0.02562 * 24 22 21 26 26 C 1.35331 * 109.99965 * 359.97438 * 25 24 22 27 27 C 1.39426 * 120.35051 * 179.72532 * 18 16 15 28 28 C 1.53041 * 109.52730 * 61.36710 * 12 11 10 29 29 C 1.46927 * 120.62999 * 151.83170 * 9 7 2 30 30 H 0.97004 * 119.99358 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.58781 * 113.79878 * 10 9 7 32 32 H 1.09005 * 109.70004 * 353.44455 * 10 9 7 33 33 H 1.08995 * 109.50184 * 185.41607 * 11 10 9 34 34 H 1.09007 * 109.49527 * 65.31283 * 11 10 9 35 35 H 1.09001 * 109.45695 * 301.36150 * 12 11 10 36 36 H 1.09002 * 109.47031 * 54.96780 * 13 12 11 37 37 H 1.09001 * 109.47206 * 294.97097 * 13 12 11 38 38 H 1.09002 * 109.47417 * 59.99978 * 14 13 12 39 39 H 1.09001 * 109.47167 * 300.00083 * 14 13 12 40 40 H 0.96998 * 119.99627 * 0.02562 * 15 14 13 41 41 H 1.08002 * 119.42921 * 0.02562 * 19 18 16 42 42 H 1.08005 * 120.95360 * 359.96962 * 27 18 16 43 43 H 1.09005 * 109.49450 * 58.58031 * 28 12 11 44 44 H 1.09002 * 109.49987 * 178.67695 * 28 12 11 45 45 H 1.09005 * 109.57939 * 246.19897 * 29 9 7 46 46 H 1.08996 * 109.58748 * 6.47903 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8917 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0551 -1.2227 -0.2717 9 7 1.3699 -2.3623 0.3464 10 6 0.2259 -2.3398 1.2680 11 6 0.4971 -3.3187 2.4147 12 6 0.8116 -4.7005 1.8368 13 6 1.0492 -5.6892 2.9800 14 6 1.2395 -7.0951 2.4072 15 7 1.4676 -8.0416 3.5019 16 6 1.6678 -9.3470 3.2332 17 8 1.6542 -9.7399 2.0829 18 6 1.9037 -10.3005 4.3366 19 6 1.9213 -9.8556 5.6651 20 7 2.1289 -10.6892 6.6576 21 6 2.3315 -11.9847 6.4521 22 7 2.5668 -13.0457 7.2882 23 1 2.6286 -13.0168 8.2558 24 7 2.6999 -14.1804 6.4757 25 7 2.5585 -13.8445 5.2418 26 6 2.3296 -12.5140 5.1477 27 6 2.1060 -11.6535 4.0674 28 6 2.0672 -4.6170 0.9657 29 6 1.8137 -3.6530 -0.1975 30 1 -0.4849 0.8401 -0.0004 31 1 -0.6772 -2.6404 0.7369 32 1 0.0966 -1.3344 1.6688 33 1 -0.3835 -3.3836 3.0537 34 1 1.3469 -2.9671 2.9999 35 1 -0.0284 -5.0406 1.2312 36 1 0.1895 -5.6831 3.6501 37 1 1.9425 -5.3979 3.5325 38 1 2.0992 -7.1011 1.7371 39 1 0.3462 -7.3863 1.8547 40 1 1.4781 -7.7282 4.4198 41 1 1.7604 -8.8087 5.8763 42 1 2.0934 -12.0262 3.0538 43 1 2.9020 -4.2530 1.5648 44 1 2.3043 -5.6059 0.5734 45 1 1.0399 -4.0606 -0.8482 46 1 2.7330 -3.5133 -0.7661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495519949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:47 Heat of formation + Delta-G solvation = 100.627276 kcal Electronic energy + Delta-G solvation = -28438.846935 eV Core-core repulsion = 24365.853479 eV Total energy + Delta-G solvation = -4072.993457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.98641 -40.44201 -38.78503 -37.99126 -35.61837 -34.60500 -33.70385 -32.33529 -31.71440 -30.98276 -29.95107 -28.57910 -25.87980 -25.26929 -24.49307 -23.30439 -23.07110 -22.03326 -21.31821 -20.73196 -19.32967 -19.15128 -18.89756 -17.58084 -17.04448 -16.75916 -16.73587 -15.83562 -15.72701 -14.84197 -14.66050 -14.43095 -14.26375 -13.89160 -13.81846 -13.61329 -13.49827 -13.34724 -13.13836 -12.85944 -12.62961 -12.56120 -12.26101 -12.12150 -11.62222 -11.36730 -11.24677 -10.92917 -10.76292 -10.70175 -10.44869 -10.21796 -10.13846 -10.09781 -9.98386 -9.86225 -9.73239 -9.48256 -9.41467 -9.24138 -8.45917 -6.64151 -5.77678 -3.19756 -0.42805 -0.00523 1.37450 1.44194 2.29016 2.63498 3.10085 3.22089 3.36831 3.44963 3.47152 3.58764 3.63339 3.95938 4.03882 4.36283 4.50568 4.64976 4.86433 4.99744 5.07017 5.15261 5.25206 5.37675 5.44561 5.45779 5.57149 5.72048 5.75067 5.95712 5.99487 6.02272 6.05830 6.17966 6.25011 6.37475 6.55077 6.63926 6.70966 6.80377 6.83189 6.86772 7.02853 7.09728 7.14192 7.39357 7.67864 7.79640 7.81146 8.47063 9.23467 9.87220 10.44165 11.30754 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.035276 B = 0.001588 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.547673 B =17625.908478 C =17906.530136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.170 3.830 11 C -0.134 4.134 12 C -0.075 4.075 13 C -0.126 4.126 14 C 0.116 3.884 15 N -0.721 5.721 16 C 0.567 3.433 17 O -0.527 6.527 18 C -0.206 4.206 19 C 0.214 3.786 20 N -0.487 5.487 21 C 0.294 3.706 22 N -0.482 5.482 23 H 0.455 0.545 24 N 0.021 4.979 25 N -0.190 5.190 26 C -0.074 4.074 27 C 0.086 3.914 28 C -0.130 4.130 29 C 0.144 3.856 30 H 0.252 0.748 31 H 0.016 0.984 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.398 0.602 41 H 0.180 0.820 42 H 0.168 0.832 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.016 0.984 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.684 -22.935 15.994 28.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.044 3.956 11 C -0.173 4.173 12 C -0.094 4.094 13 C -0.164 4.164 14 C -0.006 4.006 15 N -0.372 5.372 16 C 0.352 3.648 17 O -0.404 6.404 18 C -0.215 4.215 19 C 0.040 3.960 20 N -0.201 5.201 21 C 0.049 3.951 22 N -0.207 5.207 23 H 0.303 0.697 24 N 0.038 4.962 25 N -0.071 5.071 26 C -0.200 4.200 27 C 0.055 3.945 28 C -0.169 4.169 29 C 0.017 3.983 30 H 0.062 0.938 31 H 0.034 0.966 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.234 0.766 41 H 0.197 0.803 42 H 0.186 0.814 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.034 0.966 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.849 -24.371 15.941 29.261 hybrid contribution 0.246 1.782 0.477 1.861 sum 3.095 -22.589 16.419 28.096 Atomic orbital electron populations 1.70048 1.05247 1.25291 1.54229 1.25040 0.95279 0.98375 1.01073 0.86248 0.79378 0.84060 0.77249 1.20289 1.21762 1.21615 1.19236 0.92543 0.84883 1.41302 0.91736 1.44061 1.35889 1.01528 1.50083 1.20757 0.88617 0.98144 0.88044 1.22221 0.99902 0.95350 0.99860 1.20974 0.98548 0.94825 0.95058 1.21930 1.02124 0.92940 0.99443 1.21646 1.02488 0.87670 0.88820 1.45980 1.72743 1.07286 1.11211 1.17673 0.77276 0.82086 0.87797 1.90840 1.50519 1.78037 1.21020 1.20803 1.10537 0.94767 0.95392 1.23096 0.87748 0.98915 0.86210 1.66700 1.17361 0.99727 1.36291 1.19605 0.97028 0.89364 0.89126 1.47575 1.58150 1.04044 1.10959 0.69658 1.81775 1.14483 1.05085 0.94881 1.74926 1.10515 1.10938 1.10716 1.20413 1.13168 0.91851 0.94520 1.21120 0.84551 0.89730 0.99123 1.22125 0.97066 0.98921 0.98805 1.20903 0.97511 0.86977 0.92862 0.93752 0.96566 0.89617 0.93437 0.92745 0.91611 0.91606 0.91416 0.90514 0.91018 0.76645 0.80341 0.81428 0.92407 0.93038 0.96581 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.01 11.19 55.49 0.62 -25.39 16 2 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 3 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.25 -6.79 9.58 -15.06 -0.14 -6.94 16 8 H 0.06 1.73 7.89 -52.48 -0.41 1.32 16 9 N -0.59 -14.55 2.99 -172.32 -0.52 -15.07 16 10 C 0.17 3.92 5.30 -3.71 -0.02 3.90 16 11 C -0.13 -2.33 5.36 -26.61 -0.14 -2.48 16 12 C -0.07 -1.09 2.15 -90.58 -0.19 -1.29 16 13 C -0.13 -1.31 4.80 -26.73 -0.13 -1.43 16 14 C 0.12 1.16 5.43 -4.04 -0.02 1.14 16 15 N -0.72 -5.58 5.51 -61.29 -0.34 -5.91 16 16 C 0.57 5.37 7.77 -12.39 -0.10 5.27 16 17 O -0.53 -7.08 16.39 5.31 0.09 -6.99 16 18 C -0.21 -1.53 5.88 -104.88 -0.62 -2.14 16 19 C 0.21 1.22 10.69 -17.09 -0.18 1.04 16 20 N -0.49 -3.54 10.37 -12.03 -0.12 -3.67 16 21 C 0.29 2.35 8.49 -155.92 -1.32 1.02 16 22 N -0.48 -3.06 7.53 31.15 0.23 -2.83 16 23 H 0.46 1.29 8.96 -182.53 -1.64 -0.34 16 24 N 0.02 0.18 13.82 60.35 0.83 1.01 16 25 N -0.19 -1.85 12.40 32.17 0.40 -1.46 16 26 C -0.07 -0.66 7.27 -84.74 -0.62 -1.28 16 27 C 0.09 0.69 9.75 -38.52 -0.38 0.32 16 28 C -0.13 -2.08 5.14 -26.61 -0.14 -2.22 16 29 C 0.14 2.94 6.52 -3.71 -0.02 2.92 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 2.23 6.07 -51.93 -0.31 1.92 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.87 6.54 -51.93 -0.34 0.53 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.40 1.79 6.51 -40.82 -0.27 1.53 16 41 H 0.18 0.39 6.39 -52.49 -0.34 0.05 16 42 H 0.17 1.28 7.71 -52.48 -0.40 0.87 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.05 0.72 6.50 -51.93 -0.34 0.38 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.05 1.06 7.93 -51.93 -0.41 0.64 16 LS Contribution 376.26 15.07 5.67 5.67 Total: -1.00 -33.70 376.26 -9.67 -43.37 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -7.40 Total: -2.97 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -4.11 Total: -2.23 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 1.11 Total: -53.31 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: 0.09 Total: -6.99 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.70 -9.67 -43.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495519949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.996 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds