Wall clock time and date at job start Wed Apr 1 2020 04:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00387 * 2 1 4 4 H 1.48495 * 109.47060 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47128 * 299.99699 * 3 2 1 6 6 H 1.48508 * 109.46998 * 59.99570 * 3 2 1 7 7 C 1.38810 * 119.99397 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00119 * 163.07622 * 7 2 1 9 9 N 1.36941 * 120.00338 * 343.07182 * 7 2 1 10 10 C 1.46925 * 120.63057 * 331.85016 * 9 7 2 11 11 C 1.53192 * 108.77952 * 233.58803 * 10 9 7 12 12 C 1.53044 * 109.31136 * 305.36669 * 11 10 9 13 13 C 1.52997 * 109.46160 * 181.38512 * 12 11 10 14 14 C 1.52998 * 109.47044 * 174.97038 * 13 12 11 15 15 N 1.46505 * 109.47060 * 179.97438 * 14 13 12 16 16 C 1.34773 * 119.99906 * 180.27648 * 15 14 13 17 17 O 1.21562 * 119.99941 * 359.72282 * 16 15 14 18 18 C 1.47723 * 119.99854 * 179.73222 * 16 15 14 19 19 C 1.40114 * 120.34966 * 359.97438 * 18 16 15 20 20 N 1.31263 * 121.14952 * 179.97438 * 19 18 16 21 21 C 1.32725 * 121.79721 * 0.03346 * 20 19 18 22 22 N 1.37118 * 133.40249 * 179.97438 * 21 20 19 23 23 H 0.97000 * 126.58754 * 0.02591 * 22 21 20 24 24 N 1.40190 * 106.81533 * 179.97438 * 22 21 20 25 25 N 1.28660 * 109.51296 * 0.02562 * 24 22 21 26 26 C 1.35331 * 109.99965 * 359.97438 * 25 24 22 27 27 C 1.39426 * 120.35051 * 179.72532 * 18 16 15 28 28 C 1.53041 * 109.52730 * 61.36710 * 12 11 10 29 29 C 1.46927 * 120.62999 * 151.83170 * 9 7 2 30 30 H 0.97004 * 119.99358 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.58781 * 113.79878 * 10 9 7 32 32 H 1.09005 * 109.70004 * 353.44455 * 10 9 7 33 33 H 1.08995 * 109.50184 * 185.41607 * 11 10 9 34 34 H 1.09007 * 109.49527 * 65.31283 * 11 10 9 35 35 H 1.09001 * 109.45695 * 301.36150 * 12 11 10 36 36 H 1.09002 * 109.47031 * 54.96780 * 13 12 11 37 37 H 1.09001 * 109.47206 * 294.97097 * 13 12 11 38 38 H 1.09002 * 109.47417 * 59.99978 * 14 13 12 39 39 H 1.09001 * 109.47167 * 300.00083 * 14 13 12 40 40 H 0.96998 * 119.99627 * 0.02562 * 15 14 13 41 41 H 1.08002 * 119.42921 * 0.02562 * 19 18 16 42 42 H 1.08005 * 120.95360 * 359.96962 * 27 18 16 43 43 H 1.09005 * 109.49450 * 58.58031 * 28 12 11 44 44 H 1.09002 * 109.49987 * 178.67695 * 28 12 11 45 45 H 1.09005 * 109.57939 * 246.19897 * 29 9 7 46 46 H 1.08996 * 109.58748 * 6.47903 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8917 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0551 -1.2227 -0.2717 9 7 1.3699 -2.3623 0.3464 10 6 0.2259 -2.3398 1.2680 11 6 0.4971 -3.3187 2.4147 12 6 0.8116 -4.7005 1.8368 13 6 1.0492 -5.6892 2.9800 14 6 1.2395 -7.0951 2.4072 15 7 1.4676 -8.0416 3.5019 16 6 1.6678 -9.3470 3.2332 17 8 1.6542 -9.7399 2.0829 18 6 1.9037 -10.3005 4.3366 19 6 1.9213 -9.8556 5.6651 20 7 2.1289 -10.6892 6.6576 21 6 2.3315 -11.9847 6.4521 22 7 2.5668 -13.0457 7.2882 23 1 2.6286 -13.0168 8.2558 24 7 2.6999 -14.1804 6.4757 25 7 2.5585 -13.8445 5.2418 26 6 2.3296 -12.5140 5.1477 27 6 2.1060 -11.6535 4.0674 28 6 2.0672 -4.6170 0.9657 29 6 1.8137 -3.6530 -0.1975 30 1 -0.4849 0.8401 -0.0004 31 1 -0.6772 -2.6404 0.7369 32 1 0.0966 -1.3344 1.6688 33 1 -0.3835 -3.3836 3.0537 34 1 1.3469 -2.9671 2.9999 35 1 -0.0284 -5.0406 1.2312 36 1 0.1895 -5.6831 3.6501 37 1 1.9425 -5.3979 3.5325 38 1 2.0992 -7.1011 1.7371 39 1 0.3462 -7.3863 1.8547 40 1 1.4781 -7.7282 4.4198 41 1 1.7604 -8.8087 5.8763 42 1 2.0934 -12.0262 3.0538 43 1 2.9020 -4.2530 1.5648 44 1 2.3043 -5.6059 0.5734 45 1 1.0399 -4.0606 -0.8482 46 1 2.7330 -3.5133 -0.7661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495519949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:46 Heat of formation + Delta-G solvation = 76.705617 kcal Electronic energy + Delta-G solvation = -28439.884256 eV Core-core repulsion = 24365.853479 eV Total energy + Delta-G solvation = -4074.030778 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.56904 -41.14858 -39.61683 -39.20157 -36.72888 -35.19779 -35.11901 -33.16128 -32.88156 -32.01512 -31.44515 -29.87282 -27.11688 -26.01326 -25.51942 -24.35558 -23.89406 -23.50312 -22.15256 -21.94038 -20.59507 -19.88235 -19.60932 -18.67278 -18.10946 -17.68351 -17.33346 -16.83369 -16.60408 -16.51712 -15.69351 -15.33128 -15.27755 -15.24338 -14.89003 -14.81765 -14.44077 -14.31559 -14.18646 -13.88830 -13.82996 -13.71904 -13.17486 -12.99324 -12.91327 -12.75200 -12.72209 -12.54128 -12.19725 -12.07479 -11.88873 -11.75540 -11.57421 -11.36190 -10.98011 -10.92252 -10.73182 -10.55993 -10.50665 -10.36743 -9.99350 -8.62824 -7.84581 -5.29798 -0.99275 -0.58715 0.84268 0.87722 1.46674 1.48577 1.59155 1.62604 1.95196 2.49455 2.53164 2.68697 3.03078 3.05949 3.29458 3.40715 3.55217 3.74294 3.78595 3.92080 4.02269 4.12612 4.20721 4.39404 4.48679 4.51748 4.63348 4.66876 4.75107 4.82007 4.87174 4.93076 4.97227 5.10409 5.11664 5.18910 5.35248 5.41716 5.44724 5.48694 5.54999 5.61548 5.63716 5.72162 5.87376 6.27387 6.42843 6.48482 6.55352 7.14527 7.18959 7.91775 8.42497 9.21252 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.035276 B = 0.001588 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.547673 B =17625.908478 C =17906.530136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.053 4.053 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.288 1.288 7 C -0.260 4.260 8 H 0.064 0.936 9 N -0.611 5.611 10 C 0.173 3.827 11 C -0.120 4.120 12 C -0.071 4.071 13 C -0.110 4.110 14 C 0.122 3.878 15 N -0.704 5.704 16 C 0.570 3.430 17 O -0.572 6.572 18 C -0.202 4.202 19 C 0.229 3.771 20 N -0.491 5.491 21 C 0.289 3.711 22 N -0.464 5.464 23 H 0.469 0.531 24 N 0.010 4.990 25 N -0.214 5.214 26 C -0.090 4.090 27 C 0.080 3.920 28 C -0.118 4.118 29 C 0.136 3.864 30 H 0.249 0.751 31 H -0.010 1.010 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.418 0.582 41 H 0.220 0.780 42 H 0.164 0.836 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.007 0.993 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.467 -23.359 18.439 29.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.215 1.215 7 C -0.391 4.391 8 H 0.081 0.919 9 N -0.335 5.335 10 C 0.047 3.953 11 C -0.159 4.159 12 C -0.090 4.090 13 C -0.148 4.148 14 C -0.002 4.002 15 N -0.356 5.356 16 C 0.356 3.644 17 O -0.452 6.452 18 C -0.211 4.211 19 C 0.055 3.945 20 N -0.205 5.205 21 C 0.044 3.956 22 N -0.192 5.192 23 H 0.321 0.679 24 N 0.027 4.973 25 N -0.095 5.095 26 C -0.216 4.216 27 C 0.049 3.951 28 C -0.156 4.156 29 C 0.011 3.989 30 H 0.058 0.942 31 H 0.008 0.992 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.256 0.744 41 H 0.236 0.764 42 H 0.182 0.818 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.025 0.975 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.653 -24.827 18.450 31.147 hybrid contribution -0.017 1.919 -0.336 1.948 sum 3.636 -22.909 18.114 29.430 Atomic orbital electron populations 1.70203 1.06655 1.25653 1.55745 1.25786 0.96038 1.01445 1.01501 0.85236 0.78635 0.79989 0.76772 1.19142 1.22124 1.21511 1.19556 0.92751 0.86224 1.40548 0.91856 1.44353 1.36027 1.02230 1.50922 1.20627 0.87452 0.97838 0.89380 1.22013 1.00929 0.95312 0.97666 1.20889 0.97499 0.94340 0.96307 1.21723 1.03890 0.91391 0.97775 1.21434 1.01621 0.87905 0.89208 1.45740 1.71699 1.06357 1.11826 1.17864 0.76431 0.82578 0.87490 1.90830 1.52631 1.78825 1.22920 1.20638 1.10999 0.93892 0.95612 1.23690 0.85574 1.00291 0.84928 1.66854 1.17861 0.99259 1.36496 1.19774 0.96961 0.89917 0.88969 1.47558 1.56866 1.03210 1.11569 0.67895 1.81711 1.14850 1.05822 0.94871 1.74901 1.11542 1.11711 1.11339 1.20555 1.14012 0.91744 0.95258 1.21176 0.84625 0.90267 0.98994 1.21980 0.97825 0.98654 0.97167 1.21099 0.96753 0.86390 0.94706 0.94202 0.99156 0.93254 0.91054 0.92781 0.92263 0.89297 0.89905 0.91689 0.91969 0.74361 0.76371 0.81807 0.92389 0.90491 0.97453 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.52 11.19 21.65 0.24 -55.27 16 2 C -0.05 -2.94 4.92 84.86 0.42 -2.52 16 3 Si 0.97 44.76 29.59 68.60 2.03 46.79 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 6 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.26 -14.36 9.58 84.03 0.81 -13.56 16 8 H 0.06 3.43 7.89 -2.91 -0.02 3.40 16 9 N -0.61 -30.46 2.99 -699.09 -2.09 -32.55 16 10 C 0.17 8.10 5.30 86.36 0.46 8.56 16 11 C -0.12 -3.97 5.36 30.67 0.16 -3.81 16 12 C -0.07 -1.90 2.15 -10.77 -0.02 -1.92 16 13 C -0.11 -1.79 4.80 30.59 0.15 -1.65 16 14 C 0.12 2.03 5.43 86.38 0.47 2.50 16 15 N -0.70 -8.24 5.51 -466.09 -2.57 -10.81 16 16 C 0.57 9.49 7.77 86.75 0.67 10.16 16 17 O -0.57 -14.82 16.39 -3.91 -0.06 -14.88 16 18 C -0.20 -2.54 5.88 -20.03 -0.12 -2.66 16 19 C 0.23 1.78 10.69 85.23 0.91 2.69 16 20 N -0.49 -5.68 10.37 -191.98 -1.99 -7.67 16 21 C 0.29 4.11 8.49 134.00 1.14 5.24 16 22 N -0.46 -5.23 7.53 -55.37 -0.42 -5.65 16 23 H 0.47 1.84 8.96 -213.26 -1.91 -0.07 16 24 N 0.01 0.17 13.82 37.02 0.51 0.68 16 25 N -0.21 -4.16 12.40 -52.15 -0.65 -4.81 16 26 C -0.09 -1.53 7.27 39.63 0.29 -1.24 16 27 C 0.08 1.24 9.75 22.96 0.22 1.46 16 28 C -0.12 -3.53 5.14 30.67 0.16 -3.37 16 29 C 0.14 5.55 6.52 86.36 0.56 6.12 16 30 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 31 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 32 H 0.05 2.65 6.07 -2.38 -0.01 2.64 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.80 8.14 -2.38 -0.02 1.79 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.28 6.54 -2.39 -0.02 1.26 16 39 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 40 H 0.42 1.59 6.51 -92.71 -0.60 0.99 16 41 H 0.22 -0.25 6.39 -2.91 -0.02 -0.27 16 42 H 0.16 2.56 7.71 -2.91 -0.02 2.54 16 43 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 44 H 0.08 1.95 6.50 -2.39 -0.02 1.93 16 45 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 46 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16 Total: -1.00 -76.31 376.26 -0.19 -76.49 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -1.47 Total: 1.66 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 6.28 Total: 6.01 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -6.96 Total: -116.07 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.06 Total: -14.88 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -76.31 -0.19 -76.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495519949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.199 kcal (2) G-P(sol) polarization free energy of solvation -76.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds