Wall clock time and date at job start Wed Apr 1 2020 04:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99929 * 2 1 4 4 H 1.48497 * 109.46870 * 270.00022 * 3 2 1 5 5 H 1.48498 * 109.47146 * 30.00235 * 3 2 1 6 6 H 1.48497 * 109.47113 * 150.00073 * 3 2 1 7 7 C 1.38806 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00546 * 179.97438 * 7 2 1 9 9 N 1.36946 * 120.00023 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99589 * 174.70754 * 9 7 2 11 11 C 1.53002 * 110.81958 * 300.64164 * 10 9 7 12 12 N 1.46495 * 109.47001 * 300.98296 * 11 10 9 13 13 C 1.34785 * 119.99638 * 184.55116 * 12 11 10 14 14 O 1.21273 * 119.99619 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99668 * 179.97438 * 13 12 11 16 16 C 1.50703 * 109.46852 * 179.97438 * 15 13 12 17 17 N 1.32612 * 125.18392 * 90.02459 * 16 15 13 18 18 C 1.32824 * 109.75473 * 179.97438 * 17 16 15 19 19 N 1.33825 * 132.50042 * 180.02562 * 18 17 16 20 20 C 1.31353 * 120.86281 * 179.97438 * 19 18 17 21 21 C 1.40047 * 120.31107 * 0.02562 * 20 19 18 22 22 C 1.35775 * 119.24146 * 359.97438 * 21 20 19 23 23 N 1.35976 * 119.02324 * 0.02562 * 22 21 20 24 24 N 1.31187 * 125.18496 * 269.72426 * 16 15 13 25 25 C 1.54895 * 110.75052 * 177.30867 * 10 9 7 26 26 C 1.54262 * 104.19743 * 279.62563 * 25 10 9 27 27 C 1.53870 * 106.59815 * 336.39653 * 26 25 10 28 28 C 1.54262 * 106.60037 * 359.97438 * 27 26 25 29 29 H 0.97008 * 120.00408 * 359.97438 * 1 2 3 30 30 H 0.96994 * 120.00039 * 354.70792 * 9 7 2 31 31 H 1.09000 * 109.46455 * 60.97787 * 11 10 9 32 32 H 1.08991 * 109.47162 * 180.97727 * 11 10 9 33 33 H 0.96996 * 120.00636 * 4.54433 * 12 11 10 34 34 H 1.08996 * 109.47389 * 300.00040 * 15 13 12 35 35 H 1.08996 * 109.46898 * 60.00038 * 15 13 12 36 36 H 1.07994 * 119.84227 * 179.97438 * 20 19 18 37 37 H 1.07998 * 120.37452 * 180.02562 * 21 20 19 38 38 H 1.08000 * 120.48568 * 180.02562 * 22 21 20 39 39 H 1.09002 * 110.48242 * 160.94825 * 25 10 9 40 40 H 1.08997 * 110.48693 * 38.30809 * 25 10 9 41 41 H 1.09005 * 110.03250 * 95.67292 * 26 25 10 42 42 H 1.08993 * 110.03737 * 217.10578 * 26 25 10 43 43 H 1.09003 * 110.03693 * 119.28568 * 27 26 25 44 44 H 1.09002 * 110.02959 * 240.71015 * 27 26 25 45 45 H 1.09000 * 110.48825 * 142.29564 * 28 27 26 46 46 H 1.09004 * 110.48708 * 264.93028 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0016 10 6 2.0533 -3.6542 -0.1149 11 6 2.8546 -3.7030 -1.4174 12 7 1.9451 -3.5529 -2.5560 13 6 2.4175 -3.6572 -3.8141 14 8 3.5955 -3.8750 -4.0033 15 6 1.4819 -3.5034 -4.9854 16 6 2.2544 -3.6623 -6.2696 17 7 2.4515 -4.8090 -6.9058 18 6 3.1709 -4.5963 -8.0020 19 7 3.6240 -5.4147 -8.9589 20 6 4.3301 -4.9499 -9.9643 21 6 4.6220 -3.5830 -10.0509 22 6 4.1664 -2.7450 -9.0846 23 7 3.4381 -3.2572 -8.0569 24 7 2.8297 -2.6865 -6.9313 25 6 1.0811 -4.8565 -0.0231 26 6 0.8294 -5.0249 1.4895 27 6 2.0363 -4.3972 2.2085 28 6 2.9796 -3.8699 1.1078 29 1 -0.4851 0.8401 0.0004 30 1 0.3586 -2.3898 0.0794 31 1 3.5839 -2.8930 -1.4257 32 1 3.3726 -4.6592 -1.4897 33 1 1.0031 -3.3785 -2.4047 34 1 0.7045 -4.2654 -4.9320 35 1 1.0241 -2.5147 -4.9572 36 1 4.6880 -5.6253 -10.7273 37 1 5.2021 -3.1997 -10.8773 38 1 4.3793 -1.6872 -9.1316 39 1 1.5438 -5.7534 -0.4350 40 1 0.1491 -4.6340 -0.5425 41 1 -0.0862 -4.5072 1.7756 42 1 0.7543 -6.0830 1.7401 43 1 1.7064 -3.5750 2.8436 44 1 2.5470 -5.1508 2.8081 45 1 3.4331 -2.9270 1.4135 46 1 3.7488 -4.6075 0.8789 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495962955.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:10 Heat of formation + Delta-G solvation = 108.246512 kcal Electronic energy + Delta-G solvation = -29628.376737 eV Core-core repulsion = 25555.713676 eV Total energy + Delta-G solvation = -4072.663062 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.07133 -39.62173 -38.90287 -38.01423 -34.80042 -34.05745 -33.25554 -32.54378 -30.89810 -30.64412 -29.59855 -28.22166 -27.75274 -25.05126 -24.43374 -23.87093 -23.36444 -21.57032 -20.21694 -19.53722 -18.74627 -18.60953 -18.29398 -17.20374 -16.95773 -16.57996 -16.31638 -15.78808 -15.17536 -15.05768 -14.71924 -14.54994 -14.11313 -13.70287 -13.58876 -13.55011 -13.31238 -13.09987 -12.83126 -12.76877 -12.50095 -12.28107 -12.15835 -11.65051 -11.34589 -11.10082 -10.86095 -10.74614 -10.60795 -10.49799 -10.33737 -10.31759 -10.25206 -9.94277 -9.89298 -9.78889 -9.64862 -9.45504 -9.01270 -8.91563 -8.44831 -7.02178 -5.81544 -3.10342 0.13859 0.47869 1.68131 2.31846 2.96978 3.04242 3.18752 3.41579 3.48016 3.48587 3.60732 3.83870 3.96239 4.29483 4.49903 4.55793 4.73820 4.96666 5.10326 5.15141 5.24981 5.26841 5.28179 5.37028 5.53453 5.55374 5.66615 5.84772 5.91699 5.92898 6.03549 6.04970 6.06913 6.17401 6.24109 6.30743 6.38220 6.48247 6.57444 6.68853 6.80382 6.82734 6.99600 7.08264 7.17003 7.70078 7.77501 8.01007 8.37073 8.64809 9.49313 10.03037 10.39062 11.40444 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012452 B = 0.002723 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.049034 B =10278.732413 C =11822.679831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.008 4.008 3 Si 0.901 3.099 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.231 4.231 8 H 0.069 0.931 9 N -0.707 5.707 10 C 0.188 3.812 11 C 0.122 3.878 12 N -0.697 5.697 13 C 0.520 3.480 14 O -0.548 6.548 15 C -0.056 4.056 16 C 0.307 3.693 17 N -0.511 5.511 18 C 0.439 3.561 19 N -0.454 5.454 20 C 0.203 3.797 21 C -0.230 4.230 22 C 0.176 3.824 23 N -0.327 5.327 24 N -0.318 5.318 25 C -0.123 4.123 26 C -0.117 4.117 27 C -0.111 4.111 28 C -0.131 4.131 29 H 0.254 0.746 30 H 0.385 0.615 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.405 0.595 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.189 0.811 37 H 0.173 0.827 38 H 0.182 0.818 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.063 0.937 44 H 0.048 0.952 45 H 0.073 0.927 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.926 -9.405 -16.838 19.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.732 3.268 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.362 4.362 8 H 0.087 0.913 9 N -0.348 5.348 10 C 0.095 3.905 11 C -0.004 4.004 12 N -0.347 5.347 13 C 0.304 3.696 14 O -0.427 6.427 15 C -0.099 4.099 16 C 0.026 3.974 17 N -0.242 5.242 18 C 0.079 3.921 19 N -0.168 5.168 20 C 0.016 3.984 21 C -0.255 4.255 22 C 0.038 3.962 23 N -0.106 5.106 24 N -0.149 5.149 25 C -0.161 4.161 26 C -0.154 4.154 27 C -0.149 4.149 28 C -0.171 4.171 29 H 0.064 0.936 30 H 0.220 0.780 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.241 0.759 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.206 0.794 37 H 0.191 0.809 38 H 0.199 0.801 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.091 0.909 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.299 -9.860 -16.178 19.673 hybrid contribution 0.170 2.041 -0.228 2.061 sum 5.468 -7.819 -16.406 18.978 Atomic orbital electron populations 1.69646 1.04963 1.25603 1.57703 1.24666 0.95410 0.97443 1.02911 0.86288 0.78774 0.84213 0.77521 1.21803 1.21896 1.20831 1.19077 0.90977 0.83774 1.42415 0.91306 1.42300 1.06013 0.99217 1.87237 1.20747 0.91442 0.87268 0.91006 1.21786 0.92674 1.00263 0.85627 1.45641 1.13325 1.71066 1.04628 1.19859 0.88429 0.77399 0.83953 1.90698 1.17139 1.49324 1.85501 1.20094 0.97286 1.06995 0.85515 1.23588 0.93232 0.85174 0.95419 1.70681 1.22126 1.26147 1.05283 1.22732 0.95343 0.79621 0.94434 1.67996 1.13221 1.34073 1.01529 1.23557 0.88027 0.94056 0.92763 1.21919 1.07097 0.94615 1.01898 1.22179 0.88344 1.01865 0.83822 1.48805 1.34243 1.10142 1.17390 1.78624 1.20012 1.19245 0.96975 1.22562 0.99488 0.97721 0.96334 1.22023 0.98855 0.99270 0.95286 1.21935 0.95870 0.99209 0.97838 1.22749 0.97452 1.00598 0.96319 0.93582 0.78020 0.91679 0.92625 0.75935 0.85512 0.85572 0.79387 0.80916 0.80072 0.91700 0.91721 0.91969 0.92992 0.91819 0.93317 0.90871 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.34 13.06 55.49 0.72 -25.62 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.90 22.01 29.55 -169.99 -5.02 16.98 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.23 -5.89 8.62 -15.06 -0.13 -6.02 16 8 H 0.07 1.78 7.16 -52.49 -0.38 1.40 16 9 N -0.71 -15.55 4.80 -45.38 -0.22 -15.76 16 10 C 0.19 3.38 0.48 -129.81 -0.06 3.32 16 11 C 0.12 2.27 4.46 -4.04 -0.02 2.25 16 12 N -0.70 -12.09 5.26 -60.30 -0.32 -12.41 16 13 C 0.52 9.41 7.82 -10.98 -0.09 9.33 16 14 O -0.55 -12.08 16.03 5.56 0.09 -11.99 16 15 C -0.06 -0.83 6.33 -29.03 -0.18 -1.01 16 16 C 0.31 5.24 6.59 -157.00 -1.03 4.21 16 17 N -0.51 -9.09 11.25 -11.80 -0.13 -9.22 16 18 C 0.44 6.85 8.99 -323.13 -2.91 3.94 16 19 N -0.45 -5.65 10.48 -13.82 -0.14 -5.79 16 20 C 0.20 1.33 11.27 -17.08 -0.19 1.13 16 21 C -0.23 -1.11 10.06 -39.79 -0.40 -1.51 16 22 C 0.18 1.45 11.32 -16.60 -0.19 1.26 16 23 N -0.33 -4.58 3.91 -13.84 -0.05 -4.64 16 24 N -0.32 -5.36 12.78 32.39 0.41 -4.95 16 25 C -0.12 -1.87 5.45 -25.07 -0.14 -2.01 16 26 C -0.12 -1.72 6.78 -25.62 -0.17 -1.89 16 27 C -0.11 -1.74 6.78 -25.62 -0.17 -1.92 16 28 C -0.13 -2.26 5.86 -25.07 -0.15 -2.41 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.39 9.09 7.71 -40.82 -0.31 8.77 16 31 H 0.06 1.38 7.50 -51.93 -0.39 0.99 16 32 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 33 H 0.41 6.59 8.11 -40.82 -0.33 6.26 16 34 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.13 1.63 8.14 -51.93 -0.42 1.21 16 36 H 0.19 0.34 8.06 -52.49 -0.42 -0.09 16 37 H 0.17 0.04 8.06 -52.49 -0.42 -0.38 16 38 H 0.18 0.91 8.06 -52.49 -0.42 0.48 16 39 H 0.06 0.91 8.04 -51.93 -0.42 0.49 16 40 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 1.42 7.23 -51.93 -0.38 1.04 16 46 H 0.05 0.81 8.05 -51.93 -0.42 0.39 16 LS Contribution 386.12 15.07 5.82 5.82 Total: -1.00 -36.88 386.12 -11.18 -48.06 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -6.41 Total: 11.17 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: -5.93 Total: 8.34 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: 0.27 Total: -78.38 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.88 -11.18 -48.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495962955.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.305 kcal (2) G-P(sol) polarization free energy of solvation -36.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds