Wall clock time and date at job start Wed Apr 1 2020 04:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99929 * 2 1 4 4 H 1.48497 * 109.46870 * 270.00022 * 3 2 1 5 5 H 1.48498 * 109.47146 * 30.00235 * 3 2 1 6 6 H 1.48497 * 109.47113 * 150.00073 * 3 2 1 7 7 C 1.38806 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00546 * 179.97438 * 7 2 1 9 9 N 1.36946 * 120.00023 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99589 * 174.70754 * 9 7 2 11 11 C 1.53002 * 110.81958 * 300.64164 * 10 9 7 12 12 N 1.46495 * 109.47001 * 300.98296 * 11 10 9 13 13 C 1.34785 * 119.99638 * 184.55116 * 12 11 10 14 14 O 1.21273 * 119.99619 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99668 * 179.97438 * 13 12 11 16 16 C 1.50703 * 109.46852 * 179.97438 * 15 13 12 17 17 N 1.32612 * 125.18392 * 90.02459 * 16 15 13 18 18 C 1.32824 * 109.75473 * 179.97438 * 17 16 15 19 19 N 1.33825 * 132.50042 * 180.02562 * 18 17 16 20 20 C 1.31353 * 120.86281 * 179.97438 * 19 18 17 21 21 C 1.40047 * 120.31107 * 0.02562 * 20 19 18 22 22 C 1.35775 * 119.24146 * 359.97438 * 21 20 19 23 23 N 1.35976 * 119.02324 * 0.02562 * 22 21 20 24 24 N 1.31187 * 125.18496 * 269.72426 * 16 15 13 25 25 C 1.54895 * 110.75052 * 177.30867 * 10 9 7 26 26 C 1.54262 * 104.19743 * 279.62563 * 25 10 9 27 27 C 1.53870 * 106.59815 * 336.39653 * 26 25 10 28 28 C 1.54262 * 106.60037 * 359.97438 * 27 26 25 29 29 H 0.97008 * 120.00408 * 359.97438 * 1 2 3 30 30 H 0.96994 * 120.00039 * 354.70792 * 9 7 2 31 31 H 1.09000 * 109.46455 * 60.97787 * 11 10 9 32 32 H 1.08991 * 109.47162 * 180.97727 * 11 10 9 33 33 H 0.96996 * 120.00636 * 4.54433 * 12 11 10 34 34 H 1.08996 * 109.47389 * 300.00040 * 15 13 12 35 35 H 1.08996 * 109.46898 * 60.00038 * 15 13 12 36 36 H 1.07994 * 119.84227 * 179.97438 * 20 19 18 37 37 H 1.07998 * 120.37452 * 180.02562 * 21 20 19 38 38 H 1.08000 * 120.48568 * 180.02562 * 22 21 20 39 39 H 1.09002 * 110.48242 * 160.94825 * 25 10 9 40 40 H 1.08997 * 110.48693 * 38.30809 * 25 10 9 41 41 H 1.09005 * 110.03250 * 95.67292 * 26 25 10 42 42 H 1.08993 * 110.03737 * 217.10578 * 26 25 10 43 43 H 1.09003 * 110.03693 * 119.28568 * 27 26 25 44 44 H 1.09002 * 110.02959 * 240.71015 * 27 26 25 45 45 H 1.09000 * 110.48825 * 142.29564 * 28 27 26 46 46 H 1.09004 * 110.48708 * 264.93028 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0016 10 6 2.0533 -3.6542 -0.1149 11 6 2.8546 -3.7030 -1.4174 12 7 1.9451 -3.5529 -2.5560 13 6 2.4175 -3.6572 -3.8141 14 8 3.5955 -3.8750 -4.0033 15 6 1.4819 -3.5034 -4.9854 16 6 2.2544 -3.6623 -6.2696 17 7 2.4515 -4.8090 -6.9058 18 6 3.1709 -4.5963 -8.0020 19 7 3.6240 -5.4147 -8.9589 20 6 4.3301 -4.9499 -9.9643 21 6 4.6220 -3.5830 -10.0509 22 6 4.1664 -2.7450 -9.0846 23 7 3.4381 -3.2572 -8.0569 24 7 2.8297 -2.6865 -6.9313 25 6 1.0811 -4.8565 -0.0231 26 6 0.8294 -5.0249 1.4895 27 6 2.0363 -4.3972 2.2085 28 6 2.9796 -3.8699 1.1078 29 1 -0.4851 0.8401 0.0004 30 1 0.3586 -2.3898 0.0794 31 1 3.5839 -2.8930 -1.4257 32 1 3.3726 -4.6592 -1.4897 33 1 1.0031 -3.3785 -2.4047 34 1 0.7045 -4.2654 -4.9320 35 1 1.0241 -2.5147 -4.9572 36 1 4.6880 -5.6253 -10.7273 37 1 5.2021 -3.1997 -10.8773 38 1 4.3793 -1.6872 -9.1316 39 1 1.5438 -5.7534 -0.4350 40 1 0.1491 -4.6340 -0.5425 41 1 -0.0862 -4.5072 1.7756 42 1 0.7543 -6.0830 1.7401 43 1 1.7064 -3.5750 2.8436 44 1 2.5470 -5.1508 2.8081 45 1 3.4331 -2.9270 1.4135 46 1 3.7488 -4.6075 0.8789 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495962955.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:09 Heat of formation + Delta-G solvation = 82.948289 kcal Electronic energy + Delta-G solvation = -29629.473751 eV Core-core repulsion = 25555.713676 eV Total energy + Delta-G solvation = -4073.760075 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.00472 -40.97449 -39.92170 -39.37753 -35.65823 -35.53668 -35.10383 -33.54684 -32.31540 -31.81967 -30.81166 -29.53920 -29.23804 -26.16056 -25.64866 -25.16356 -24.67768 -22.71776 -21.53564 -20.87844 -20.22216 -19.48668 -19.16327 -18.95523 -18.34296 -17.48740 -17.39037 -17.05188 -16.58197 -16.36350 -16.07259 -15.72483 -15.47906 -15.19535 -15.00651 -14.68580 -14.53020 -14.21991 -13.94681 -13.76103 -13.73051 -13.63124 -13.15982 -13.08747 -13.03220 -12.90653 -12.43774 -12.34439 -12.27703 -11.91517 -11.78611 -11.58895 -11.38766 -11.35337 -11.15594 -11.11474 -11.03161 -10.86398 -10.63932 -9.96975 -9.92441 -8.93747 -7.89548 -5.14509 -0.50815 -0.33553 0.86178 1.29966 1.44037 1.46840 1.52053 1.59286 2.12091 2.35286 2.45690 2.57558 2.81624 3.36417 3.41893 3.49994 3.77888 3.82262 3.84654 3.95268 3.99522 4.12448 4.13774 4.27388 4.40835 4.46324 4.53178 4.61863 4.70974 4.79392 4.84227 4.88814 4.98398 5.04092 5.04852 5.06996 5.15691 5.21748 5.24557 5.37048 5.43372 5.48335 5.54062 5.63310 5.71395 6.33959 6.37485 6.58877 6.77485 7.22936 7.42204 8.15247 8.41215 9.32677 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012452 B = 0.002723 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.049034 B =10278.732413 C =11822.679831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.062 4.062 3 Si 0.947 3.053 4 H -0.296 1.296 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.213 4.213 8 H 0.061 0.939 9 N -0.707 5.707 10 C 0.183 3.817 11 C 0.130 3.870 12 N -0.691 5.691 13 C 0.519 3.481 14 O -0.591 6.591 15 C -0.049 4.049 16 C 0.289 3.711 17 N -0.556 5.556 18 C 0.419 3.581 19 N -0.494 5.494 20 C 0.214 3.786 21 C -0.187 4.187 22 C 0.140 3.860 23 N -0.334 5.334 24 N -0.354 5.354 25 C -0.115 4.115 26 C -0.113 4.113 27 C -0.108 4.108 28 C -0.131 4.131 29 H 0.248 0.752 30 H 0.378 0.622 31 H 0.031 0.969 32 H 0.066 0.934 33 H 0.412 0.588 34 H 0.155 0.845 35 H 0.140 0.860 36 H 0.243 0.757 37 H 0.234 0.766 38 H 0.209 0.791 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.081 0.919 43 H 0.041 0.959 44 H 0.074 0.926 45 H 0.044 0.956 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.102 -10.838 -19.187 22.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.255 4.255 3 Si 0.779 3.221 4 H -0.224 1.224 5 H -0.223 1.223 6 H -0.204 1.204 7 C -0.345 4.345 8 H 0.079 0.921 9 N -0.347 5.347 10 C 0.092 3.908 11 C 0.003 3.997 12 N -0.340 5.340 13 C 0.305 3.695 14 O -0.473 6.473 15 C -0.091 4.091 16 C 0.008 3.992 17 N -0.290 5.290 18 C 0.059 3.941 19 N -0.210 5.210 20 C 0.031 3.969 21 C -0.211 4.211 22 C 0.005 3.995 23 N -0.113 5.113 24 N -0.186 5.186 25 C -0.153 4.153 26 C -0.150 4.150 27 C -0.146 4.146 28 C -0.171 4.171 29 H 0.057 0.943 30 H 0.212 0.788 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.248 0.752 34 H 0.173 0.827 35 H 0.158 0.842 36 H 0.259 0.741 37 H 0.250 0.750 38 H 0.226 0.774 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.060 0.940 44 H 0.093 0.907 45 H 0.063 0.937 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.517 -11.304 -18.568 22.694 hybrid contribution 0.036 2.393 0.242 2.406 sum 6.553 -8.910 -18.326 21.405 Atomic orbital electron populations 1.69745 1.05754 1.25450 1.59967 1.25174 0.96063 0.99672 1.04584 0.85524 0.77927 0.81727 0.76907 1.22441 1.22317 1.20415 1.19208 0.90726 0.85028 1.39570 0.92074 1.42321 1.05665 0.99783 1.86970 1.20963 0.92224 0.86770 0.90882 1.21644 0.92371 0.99393 0.86256 1.45609 1.13414 1.70660 1.04366 1.20411 0.88299 0.76101 0.84695 1.90666 1.19183 1.51287 1.86124 1.20121 0.96793 1.08692 0.83460 1.23777 0.94025 0.85339 0.96090 1.70526 1.24311 1.27091 1.07077 1.22960 0.95647 0.80649 0.94820 1.68129 1.15733 1.34398 1.02780 1.24694 0.84798 0.96021 0.91414 1.22685 1.03958 0.93233 1.01221 1.23153 0.88691 1.04234 0.83452 1.48848 1.34835 1.09857 1.17759 1.78399 1.21301 1.20358 0.98590 1.22534 0.98900 0.96734 0.97133 1.22011 0.97715 1.00850 0.94441 1.21917 0.96144 0.99212 0.97298 1.22729 0.98061 0.99956 0.96337 0.94297 0.78833 0.95098 0.91618 0.75163 0.82707 0.84218 0.74120 0.74957 0.77385 0.89708 0.91303 0.92987 0.90057 0.94035 0.90702 0.93725 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.29 13.06 21.65 0.28 -55.01 16 2 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 3 Si 0.95 46.23 29.55 68.60 2.03 48.25 16 4 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 7 C -0.21 -11.07 8.62 84.03 0.72 -10.35 16 8 H 0.06 3.25 7.16 -2.91 -0.02 3.23 16 9 N -0.71 -31.50 4.80 -297.49 -1.43 -32.93 16 10 C 0.18 6.51 0.48 4.90 0.00 6.51 16 11 C 0.13 4.85 4.46 86.38 0.39 5.24 16 12 N -0.69 -24.27 5.26 -463.07 -2.43 -26.71 16 13 C 0.52 19.35 7.82 87.66 0.69 20.03 16 14 O -0.59 -27.11 16.03 -3.01 -0.05 -27.16 16 15 C -0.05 -1.48 6.33 29.10 0.18 -1.29 16 16 C 0.29 10.33 6.59 138.68 0.91 11.24 16 17 N -0.56 -20.68 11.25 -191.24 -2.15 -22.83 16 18 C 0.42 13.29 8.99 261.60 2.35 15.64 16 19 N -0.49 -11.72 10.48 -197.63 -2.07 -13.80 16 20 C 0.21 1.96 11.27 85.20 0.96 2.92 16 21 C -0.19 -0.93 10.06 22.14 0.22 -0.71 16 22 C 0.14 2.00 11.32 83.48 0.94 2.95 16 23 N -0.33 -9.41 3.91 -197.71 -0.77 -10.18 16 24 N -0.35 -12.45 12.78 -51.44 -0.66 -13.11 16 25 C -0.12 -3.28 5.45 31.67 0.17 -3.11 16 26 C -0.11 -3.06 6.78 31.32 0.21 -2.85 16 27 C -0.11 -3.23 6.78 31.32 0.21 -3.02 16 28 C -0.13 -4.43 5.86 31.67 0.19 -4.25 16 29 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16 30 H 0.38 18.03 7.71 -92.71 -0.72 17.31 16 31 H 0.03 1.36 7.50 -2.39 -0.02 1.34 16 32 H 0.07 2.33 8.13 -2.39 -0.02 2.31 16 33 H 0.41 13.41 8.11 -92.71 -0.75 12.66 16 34 H 0.16 3.63 8.14 -2.39 -0.02 3.61 16 35 H 0.14 3.73 8.14 -2.39 -0.02 3.71 16 36 H 0.24 -0.58 8.06 -2.91 -0.02 -0.60 16 37 H 0.23 -1.64 8.06 -2.91 -0.02 -1.66 16 38 H 0.21 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.08 2.13 8.04 -2.39 -0.02 2.11 16 40 H 0.07 1.93 8.09 -2.39 -0.02 1.91 16 41 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.04 1.75 7.23 -2.39 -0.02 1.74 16 46 H 0.07 2.17 8.05 -2.38 -0.02 2.15 16 Total: -1.00 -87.41 386.12 0.94 -86.48 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: -0.44 Total: 30.99 kcal Atomic # 6 Polarization: 27.38 SS G_CDS: 8.62 Total: 36.01 kcal Atomic # 7 Polarization: -165.34 SS G_CDS: -9.23 Total: -174.57 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.05 Total: -27.16 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -87.41 0.94 -86.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495962955.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.423 kcal (2) G-P(sol) polarization free energy of solvation -87.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds