Wall clock time and date at job start Wed Apr 1 2020 03:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 F 1.39905 * 109.46770 * 240.00799 * 2 1 3 5 5 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 6 6 C 1.52997 * 109.47482 * 184.99813 * 5 2 1 7 7 N 1.46899 * 109.47254 * 179.97438 * 6 5 2 8 8 C 1.47585 * 110.99899 * 73.90078 * 7 6 5 9 9 C 1.52964 * 87.80546 * 138.30515 * 8 7 6 10 10 C 1.47569 * 110.99781 * 169.99810 * 7 6 5 11 11 C 1.52566 * 114.07900 * 88.04138 * 9 8 7 12 12 C 1.53351 * 109.13110 * 190.22914 * 11 9 8 13 13 N 1.46890 * 108.74829 * 307.73714 * 12 11 9 14 14 C 1.34780 * 120.46512 * 235.63825 * 13 12 11 15 15 O 1.21276 * 120.00370 * 179.97438 * 14 13 12 16 16 C 1.50699 * 119.99737 * 359.97438 * 14 13 12 17 17 S 1.81005 * 109.47201 * 179.97438 * 16 14 13 18 18 C 1.76192 * 100.00164 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00184 * 359.97438 * 18 17 16 20 20 C 1.38797 * 119.99974 * 179.97438 * 18 17 16 21 21 N 1.31627 * 119.99915 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99952 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47334 * 60.00036 * 22 20 18 24 24 H 1.48503 * 109.47087 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47221 * 300.00277 * 22 20 18 26 26 C 1.46889 * 119.07144 * 55.61712 * 13 12 11 27 27 C 1.52570 * 114.08441 * 220.59488 * 9 8 7 28 28 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 29 29 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 30 30 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47103 * 64.99566 * 5 2 1 32 32 H 1.08998 * 109.46862 * 305.00378 * 5 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 6 5 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 6 5 2 35 35 H 1.08999 * 113.50030 * 253.04327 * 8 7 6 36 36 H 1.09004 * 113.49292 * 23.57261 * 8 7 6 37 37 H 1.08997 * 113.50412 * 336.43151 * 10 7 6 38 38 H 1.09002 * 113.49600 * 106.97348 * 10 7 6 39 39 H 1.09002 * 109.52695 * 310.11940 * 11 9 8 40 40 H 1.08994 * 109.53068 * 70.33008 * 11 9 8 41 41 H 1.09001 * 109.59176 * 187.95938 * 12 11 9 42 42 H 1.09001 * 109.59755 * 67.51423 * 12 11 9 43 43 H 1.09005 * 109.46902 * 299.99787 * 16 14 13 44 44 H 1.08995 * 109.47461 * 59.99749 * 16 14 13 45 45 H 0.97004 * 119.99688 * 179.97438 * 21 20 18 46 46 H 1.09008 * 109.59182 * 184.59550 * 26 13 12 47 47 H 1.09000 * 109.59155 * 64.15514 * 26 13 12 48 48 H 1.08997 * 109.53096 * 289.66228 * 27 9 8 49 49 H 1.08997 * 109.52584 * 49.87367 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9962 -0.6594 -1.1424 5 6 2.0400 -0.7214 1.2491 6 6 3.5648 -0.6135 1.3135 7 7 4.0545 -1.3056 2.5131 8 6 3.9806 -2.7701 2.3460 9 6 5.3536 -2.8566 3.0147 10 6 5.5247 -1.4302 2.4887 11 6 5.2997 -2.9556 4.5362 12 6 6.7141 -2.7786 5.1018 13 7 7.6156 -3.7177 4.4212 14 6 8.3525 -4.5943 5.1319 15 8 9.0937 -5.3662 4.5614 16 6 8.2552 -4.6153 6.6357 17 16 9.3566 -5.8921 7.2937 18 6 9.0513 -5.7003 9.0184 19 1 8.3516 -4.9533 9.3632 20 6 9.7100 -6.5092 9.9339 21 7 10.5632 -7.4192 9.5138 22 14 9.3869 -6.3054 11.7625 23 1 7.9483 -6.5464 12.0408 24 1 10.2089 -7.2813 12.5222 25 1 9.7471 -4.9259 12.1781 26 6 7.7025 -3.6883 2.9552 27 6 6.2952 -3.8720 2.3743 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7516 -1.7716 1.2053 32 1 1.6054 -0.2620 2.1368 33 1 3.8532 0.4368 1.3572 34 1 3.9994 -1.0729 0.4257 35 1 3.1840 -3.2343 2.9273 36 1 3.9840 -3.0892 1.3037 37 1 5.9481 -1.3849 1.4854 38 1 6.0289 -0.7658 3.1905 39 1 4.6498 -2.1739 4.9294 40 1 4.9118 -3.9326 4.8243 41 1 6.7088 -2.9874 6.1716 42 1 7.0520 -1.7569 4.9283 43 1 8.5477 -3.6430 7.0322 44 1 7.2290 -4.8341 6.9304 45 1 11.0238 -7.9843 10.1537 46 1 8.3483 -4.4962 2.6110 47 1 8.1090 -2.7298 2.6323 48 1 5.9421 -4.8811 2.5870 49 1 6.3225 -3.7141 1.2962 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495971198.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:57 Heat of formation + Delta-G solvation = -62.589844 kcal Electronic energy + Delta-G solvation = -27785.248032 eV Core-core repulsion = 23788.408189 eV Total energy + Delta-G solvation = -3996.839844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.06981 -41.39868 -39.28554 -36.52134 -34.85213 -32.46947 -32.41327 -31.56670 -29.85518 -28.82435 -26.72784 -25.76200 -25.45090 -23.58478 -23.43516 -21.98824 -21.25367 -19.80502 -18.23499 -17.55398 -17.18030 -16.78272 -16.21892 -15.94489 -15.78841 -15.61759 -15.28157 -15.01645 -14.81245 -14.79182 -14.26985 -13.89480 -13.80166 -13.47095 -13.33186 -13.24866 -12.86528 -12.79461 -12.71049 -12.60136 -12.42850 -12.18966 -11.98713 -11.79812 -11.49786 -11.35986 -11.19265 -11.17935 -11.03013 -11.02714 -10.80646 -10.73194 -10.56480 -10.42842 -9.79607 -9.31810 -9.23769 -9.04725 -8.46218 -8.21013 -6.48570 -6.20141 -3.90699 2.97147 3.08179 3.24299 3.27117 3.30172 3.50716 3.62546 3.95061 4.07961 4.18922 4.21588 4.25357 4.35042 4.41999 4.61062 4.68392 4.78791 4.81040 4.93719 5.04220 5.06157 5.07315 5.12163 5.14828 5.18169 5.22200 5.25426 5.33968 5.35754 5.44279 5.47169 5.51883 5.57834 5.61809 5.64806 5.67766 5.78355 5.85039 5.88538 5.91852 5.93681 6.06355 6.10447 6.14366 6.67710 6.69912 7.59322 7.61218 8.36247 8.59759 9.24953 10.87192 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.025634 B = 0.001831 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.026203 B =15289.108753 C =16033.456581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.087 3.913 3 H 0.083 0.917 4 F -0.216 7.216 5 C -0.141 4.141 6 C 0.018 3.982 7 N -0.468 5.468 8 C 0.005 3.995 9 C -0.081 4.081 10 C 0.007 3.993 11 C -0.104 4.104 12 C 0.110 3.890 13 N -0.619 5.619 14 C 0.535 3.465 15 O -0.519 6.519 16 C -0.150 4.150 17 S -0.062 6.062 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.116 3.884 27 C -0.119 4.119 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.269 0.731 46 H 0.094 0.906 47 H 0.062 0.938 48 H 0.073 0.927 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.073 17.076 -18.357 31.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.051 3.949 3 H 0.101 0.899 4 F -0.197 7.197 5 C -0.179 4.179 6 C -0.111 4.111 7 N -0.190 5.190 8 C -0.124 4.124 9 C -0.081 4.081 10 C -0.122 4.122 11 C -0.142 4.142 12 C -0.014 4.014 13 N -0.355 5.355 14 C 0.323 3.677 15 O -0.393 6.393 16 C -0.301 4.301 17 S 0.165 5.835 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.007 4.007 27 C -0.157 4.157 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.079 0.921 46 H 0.112 0.888 47 H 0.080 0.920 48 H 0.091 0.909 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.182 16.130 -18.640 30.630 hybrid contribution -0.835 0.794 0.937 1.485 sum -19.017 16.924 -17.703 31.007 Atomic orbital electron populations 1.22370 0.94155 1.03704 1.03512 1.21580 0.94948 0.96278 0.82129 0.89920 1.92822 1.90292 1.83419 1.53164 1.22133 0.95902 1.02195 0.97668 1.22658 0.95278 1.00495 0.92659 1.68944 1.09000 1.07199 1.33865 1.23887 0.98086 0.90214 1.00182 1.21574 0.95264 0.94928 0.96384 1.23871 0.90337 0.97012 1.00983 1.21583 0.97051 1.03239 0.92352 1.21715 0.88809 0.92959 0.97885 1.48067 1.43957 1.37169 1.06294 1.20337 0.78944 0.79116 0.89336 1.90683 1.37821 1.39067 1.71747 1.23554 1.06193 1.06648 0.93702 1.85397 1.52920 1.41597 1.03565 1.22821 1.30398 1.23844 0.91317 0.90999 1.24984 0.94512 0.94485 0.99557 1.70010 1.25416 1.19760 1.35092 0.86236 0.78431 0.78146 0.82753 1.19939 1.20822 1.19946 1.21453 0.96596 1.02600 0.80043 1.21836 0.95109 0.99519 0.99278 0.90535 0.91421 0.91361 0.90705 0.89234 0.90492 0.93536 0.89653 0.91208 0.91242 0.89479 0.89632 0.90965 0.89029 0.91526 0.89305 0.89282 0.92150 0.88803 0.91979 0.90860 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.76 9.65 37.16 0.36 -0.41 16 2 C 0.09 0.48 3.96 -26.74 -0.11 0.38 16 3 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 4 F -0.22 -1.84 16.76 2.25 0.04 -1.80 16 5 C -0.14 -0.82 5.09 -26.74 -0.14 -0.95 16 6 C 0.02 0.12 4.74 -3.83 -0.02 0.10 16 7 N -0.47 -3.64 6.18 -244.53 -1.51 -5.15 16 8 C 0.01 0.04 6.16 -7.29 -0.04 -0.01 16 9 C -0.08 -0.68 0.83 -154.98 -0.13 -0.81 16 10 C 0.01 0.05 6.65 -7.28 -0.05 0.00 16 11 C -0.10 -0.97 5.27 -26.77 -0.14 -1.11 16 12 C 0.11 1.19 6.24 -3.65 -0.02 1.17 16 13 N -0.62 -8.69 2.94 -172.63 -0.51 -9.19 16 14 C 0.53 10.20 7.71 -10.98 -0.08 10.12 16 15 O -0.52 -11.92 15.25 5.56 0.08 -11.83 16 16 C -0.15 -3.06 4.49 36.01 0.16 -2.90 16 17 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 18 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16 19 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16 22 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.12 1.38 6.34 -3.65 -0.02 1.35 16 27 C -0.12 -1.11 5.30 -26.77 -0.14 -1.26 16 28 H 0.08 0.23 8.14 -51.92 -0.42 -0.19 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.48 7.66 -51.93 -0.40 0.09 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.35 7.36 -51.93 -0.38 -0.04 16 35 H 0.09 0.67 8.11 -51.93 -0.42 0.25 16 36 H 0.07 0.53 7.66 -51.93 -0.40 0.13 16 37 H 0.07 0.50 7.69 -51.93 -0.40 0.10 16 38 H 0.09 0.69 7.52 -51.93 -0.39 0.30 16 39 H 0.09 0.74 7.95 -51.93 -0.41 0.33 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 1.04 5.89 -51.93 -0.31 0.73 16 42 H 0.07 0.63 7.59 -51.93 -0.39 0.24 16 43 H 0.09 1.68 7.90 -51.91 -0.41 1.27 16 44 H 0.09 1.68 7.72 -51.92 -0.40 1.28 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.09 1.31 6.98 -51.92 -0.36 0.95 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 LS Contribution 400.71 15.07 6.04 6.04 Total: -1.00 -33.95 400.71 -10.98 -44.93 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -8.44 Total: -2.73 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -0.18 Total: -7.26 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: -1.29 Total: -39.81 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.95 -10.98 -44.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495971198.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.661 kcal (2) G-P(sol) polarization free energy of solvation -33.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds