Wall clock time and date at job start Wed Apr 1 2020 03:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 F 1.39905 * 109.46770 * 240.00799 * 2 1 3 5 5 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 6 6 C 1.52997 * 109.47482 * 184.99813 * 5 2 1 7 7 N 1.46899 * 109.47254 * 179.97438 * 6 5 2 8 8 C 1.47585 * 110.99899 * 73.90078 * 7 6 5 9 9 C 1.52964 * 87.80546 * 138.30515 * 8 7 6 10 10 C 1.47569 * 110.99781 * 169.99810 * 7 6 5 11 11 C 1.52566 * 114.07900 * 88.04138 * 9 8 7 12 12 C 1.53351 * 109.13110 * 190.22914 * 11 9 8 13 13 N 1.46890 * 108.74829 * 307.73714 * 12 11 9 14 14 C 1.34780 * 120.46512 * 235.63825 * 13 12 11 15 15 O 1.21276 * 120.00370 * 179.97438 * 14 13 12 16 16 C 1.50699 * 119.99737 * 359.97438 * 14 13 12 17 17 S 1.81005 * 109.47201 * 179.97438 * 16 14 13 18 18 C 1.76192 * 100.00164 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00184 * 359.97438 * 18 17 16 20 20 C 1.38797 * 119.99974 * 179.97438 * 18 17 16 21 21 N 1.31627 * 119.99915 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99952 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47334 * 60.00036 * 22 20 18 24 24 H 1.48503 * 109.47087 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47221 * 300.00277 * 22 20 18 26 26 C 1.46889 * 119.07144 * 55.61712 * 13 12 11 27 27 C 1.52570 * 114.08441 * 220.59488 * 9 8 7 28 28 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 29 29 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 30 30 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47103 * 64.99566 * 5 2 1 32 32 H 1.08998 * 109.46862 * 305.00378 * 5 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 6 5 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 6 5 2 35 35 H 1.08999 * 113.50030 * 253.04327 * 8 7 6 36 36 H 1.09004 * 113.49292 * 23.57261 * 8 7 6 37 37 H 1.08997 * 113.50412 * 336.43151 * 10 7 6 38 38 H 1.09002 * 113.49600 * 106.97348 * 10 7 6 39 39 H 1.09002 * 109.52695 * 310.11940 * 11 9 8 40 40 H 1.08994 * 109.53068 * 70.33008 * 11 9 8 41 41 H 1.09001 * 109.59176 * 187.95938 * 12 11 9 42 42 H 1.09001 * 109.59755 * 67.51423 * 12 11 9 43 43 H 1.09005 * 109.46902 * 299.99787 * 16 14 13 44 44 H 1.08995 * 109.47461 * 59.99749 * 16 14 13 45 45 H 0.97004 * 119.99688 * 179.97438 * 21 20 18 46 46 H 1.09008 * 109.59182 * 184.59550 * 26 13 12 47 47 H 1.09000 * 109.59155 * 64.15514 * 26 13 12 48 48 H 1.08997 * 109.53096 * 289.66228 * 27 9 8 49 49 H 1.08997 * 109.52584 * 49.87367 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9962 -0.6594 -1.1424 5 6 2.0400 -0.7214 1.2491 6 6 3.5648 -0.6135 1.3135 7 7 4.0545 -1.3056 2.5131 8 6 3.9806 -2.7701 2.3460 9 6 5.3536 -2.8566 3.0147 10 6 5.5247 -1.4302 2.4887 11 6 5.2997 -2.9556 4.5362 12 6 6.7141 -2.7786 5.1018 13 7 7.6156 -3.7177 4.4212 14 6 8.3525 -4.5943 5.1319 15 8 9.0937 -5.3662 4.5614 16 6 8.2552 -4.6153 6.6357 17 16 9.3566 -5.8921 7.2937 18 6 9.0513 -5.7003 9.0184 19 1 8.3516 -4.9533 9.3632 20 6 9.7100 -6.5092 9.9339 21 7 10.5632 -7.4192 9.5138 22 14 9.3869 -6.3054 11.7625 23 1 7.9483 -6.5464 12.0408 24 1 10.2089 -7.2813 12.5222 25 1 9.7471 -4.9259 12.1781 26 6 7.7025 -3.6883 2.9552 27 6 6.2952 -3.8720 2.3743 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7516 -1.7716 1.2053 32 1 1.6054 -0.2620 2.1368 33 1 3.8532 0.4368 1.3572 34 1 3.9994 -1.0729 0.4257 35 1 3.1840 -3.2343 2.9273 36 1 3.9840 -3.0892 1.3037 37 1 5.9481 -1.3849 1.4854 38 1 6.0289 -0.7658 3.1905 39 1 4.6498 -2.1739 4.9294 40 1 4.9118 -3.9326 4.8243 41 1 6.7088 -2.9874 6.1716 42 1 7.0520 -1.7569 4.9283 43 1 8.5477 -3.6430 7.0322 44 1 7.2290 -4.8341 6.9304 45 1 11.0238 -7.9843 10.1537 46 1 8.3483 -4.4962 2.6110 47 1 8.1090 -2.7298 2.6323 48 1 5.9421 -4.8811 2.5870 49 1 6.3225 -3.7141 1.2962 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495971198.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:56 Heat of formation + Delta-G solvation = -84.581991 kcal Electronic energy + Delta-G solvation = -27786.201683 eV Core-core repulsion = 23788.408189 eV Total energy + Delta-G solvation = -3997.793495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.60770 -42.14085 -40.56648 -37.58967 -35.47823 -34.57683 -33.36340 -32.43121 -30.79522 -29.94658 -27.70568 -27.37012 -26.35380 -24.47173 -24.28229 -22.55567 -21.85396 -20.93732 -19.80674 -18.83572 -18.10445 -17.62318 -16.95995 -16.92541 -16.86168 -16.63143 -16.52557 -16.25236 -15.86344 -15.60942 -15.43459 -15.00691 -14.82360 -14.54149 -14.45016 -14.20389 -13.74959 -13.70802 -13.54558 -13.30034 -13.22826 -13.16191 -13.05843 -13.01195 -12.85821 -12.61018 -12.48131 -12.18910 -12.06148 -11.75640 -11.73107 -11.62583 -11.56785 -11.26895 -11.12019 -11.11134 -10.83388 -10.25492 -9.84599 -9.61625 -8.66598 -8.33476 -6.12036 1.26609 1.44666 1.46693 1.56362 1.58671 2.13188 2.28577 2.94990 3.00492 3.26015 3.29277 3.57606 3.64888 3.68516 3.78535 3.84723 3.97214 4.01777 4.12287 4.15729 4.20297 4.26182 4.28657 4.37221 4.43215 4.47014 4.51854 4.60153 4.61662 4.62290 4.69931 4.77594 4.81218 4.85253 4.86753 4.93158 5.04715 5.06592 5.11394 5.20431 5.25544 5.26552 5.32737 5.39035 5.42263 5.62211 6.09647 6.20391 6.31021 7.07462 7.16124 8.75486 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.025634 B = 0.001831 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.026203 B =15289.108753 C =16033.456581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.082 3.918 3 H 0.097 0.903 4 F -0.235 7.235 5 C -0.135 4.135 6 C 0.019 3.981 7 N -0.473 5.473 8 C 0.011 3.989 9 C -0.081 4.081 10 C 0.011 3.989 11 C -0.096 4.096 12 C 0.103 3.897 13 N -0.604 5.604 14 C 0.532 3.468 15 O -0.569 6.569 16 C -0.123 4.123 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.262 1.262 26 C 0.112 3.888 27 C -0.109 4.109 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.039 0.961 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.060 0.940 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.271 0.729 46 H 0.068 0.932 47 H 0.086 0.914 48 H 0.057 0.943 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.215 19.742 -17.945 34.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.046 3.954 3 H 0.115 0.885 4 F -0.216 7.216 5 C -0.173 4.173 6 C -0.110 4.110 7 N -0.195 5.195 8 C -0.118 4.118 9 C -0.082 4.082 10 C -0.117 4.117 11 C -0.134 4.134 12 C -0.019 4.019 13 N -0.338 5.338 14 C 0.319 3.681 15 O -0.448 6.448 16 C -0.274 4.274 17 S 0.074 5.926 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.186 1.186 26 C -0.010 4.010 27 C -0.148 4.148 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.057 0.943 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.117 0.883 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.104 0.896 48 H 0.076 0.924 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.372 18.845 -18.254 33.216 hybrid contribution -0.241 0.062 0.685 0.728 sum -20.613 18.907 -17.569 33.031 Atomic orbital electron populations 1.22367 0.93234 1.03601 1.04366 1.21786 0.95752 0.96727 0.81166 0.88462 1.92786 1.90608 1.83901 1.54310 1.22076 0.95330 1.01795 0.98080 1.22670 0.95777 1.00654 0.91889 1.68944 1.09069 1.07046 1.34424 1.23829 0.97368 0.90420 1.00214 1.21516 0.95614 0.95316 0.95772 1.23862 0.90447 0.96010 1.01411 1.21509 0.95871 1.03115 0.92934 1.22007 0.89131 0.93163 0.97587 1.48080 1.42632 1.35818 1.07279 1.20138 0.79349 0.79696 0.88873 1.90666 1.40357 1.41468 1.72281 1.23371 1.04886 1.04478 0.94697 1.85586 1.56174 1.45762 1.05054 1.23164 1.30675 1.24231 0.91353 0.89876 1.26130 0.93951 0.93831 1.05195 1.70183 1.26679 1.20897 1.37000 0.85010 0.78793 0.78590 0.75639 1.18606 1.20427 1.18605 1.21640 0.97996 1.02873 0.78456 1.21764 0.93494 0.99110 1.00441 0.89047 0.91235 0.91951 0.91567 0.88480 0.89796 0.94254 0.89772 0.90915 0.90496 0.89136 0.88267 0.92082 0.89307 0.89130 0.87470 0.87591 0.92015 0.91342 0.89608 0.92421 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 9.65 71.98 0.69 -0.51 16 2 C 0.08 0.76 3.96 30.59 0.12 0.88 16 3 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 4 F -0.23 -3.73 16.76 44.97 0.75 -2.98 16 5 C -0.13 -1.28 5.09 30.59 0.16 -1.13 16 6 C 0.02 0.21 4.74 86.30 0.41 0.62 16 7 N -0.47 -6.04 6.18 -927.56 -5.73 -11.78 16 8 C 0.01 0.14 6.16 83.68 0.52 0.65 16 9 C -0.08 -1.18 0.83 -52.48 -0.04 -1.22 16 10 C 0.01 0.14 6.65 83.70 0.56 0.69 16 11 C -0.10 -1.55 5.27 30.57 0.16 -1.39 16 12 C 0.10 1.99 6.24 86.42 0.54 2.53 16 13 N -0.60 -16.31 2.94 -818.46 -2.41 -18.72 16 14 C 0.53 20.45 7.71 87.66 0.68 21.13 16 15 O -0.57 -27.18 15.25 -3.02 -0.05 -27.22 16 16 C -0.12 -5.01 4.49 71.24 0.32 -4.69 16 17 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 18 C -0.55 -31.35 9.50 67.95 0.65 -30.71 16 19 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 20 C 0.01 0.78 5.49 84.86 0.47 1.25 16 21 N -0.91 -56.28 13.22 21.65 0.29 -56.00 16 22 Si 1.00 43.59 29.55 68.60 2.03 45.61 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 26 C 0.11 2.55 6.34 86.42 0.55 3.09 16 27 C -0.11 -1.88 5.30 30.57 0.16 -1.72 16 28 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 29 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 32 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.04 0.50 7.36 -2.39 -0.02 0.49 16 35 H 0.08 1.15 8.11 -2.39 -0.02 1.14 16 36 H 0.07 0.94 7.66 -2.38 -0.02 0.92 16 37 H 0.08 0.86 7.69 -2.39 -0.02 0.84 16 38 H 0.09 1.09 7.52 -2.39 -0.02 1.07 16 39 H 0.10 1.40 7.95 -2.39 -0.02 1.38 16 40 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.09 1.79 5.89 -2.39 -0.01 1.78 16 42 H 0.09 1.40 7.59 -2.39 -0.02 1.38 16 43 H 0.11 3.94 7.90 -2.39 -0.02 3.92 16 44 H 0.11 3.92 7.72 -2.40 -0.02 3.90 16 45 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 46 H 0.07 1.94 6.98 -2.38 -0.02 1.93 16 47 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.09 1.24 8.10 -2.39 -0.02 1.23 16 Total: -1.00 -76.23 400.71 0.56 -75.67 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.92 Total: 15.72 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: 5.93 Total: -10.52 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -7.85 Total: -86.50 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.05 Total: -27.22 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.75 Total: -2.98 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -76.23 0.56 -75.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495971198.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.916 kcal (2) G-P(sol) polarization free energy of solvation -76.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds