Wall clock time and date at job start Wed Apr 1 2020 04:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00191 * 2 1 4 4 H 1.48493 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46681 * 299.99915 * 3 2 1 6 6 H 1.48500 * 109.47241 * 59.99926 * 3 2 1 7 7 C 1.38820 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99797 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99537 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99364 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46866 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47497 * 304.99717 * 11 10 9 13 13 C 1.53002 * 109.47415 * 65.00069 * 11 10 9 14 14 C 1.53000 * 109.47233 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47060 * 299.99657 * 14 13 11 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 13 17 17 C 1.52997 * 109.47232 * 184.99942 * 11 10 9 18 18 H 1.09002 * 109.47153 * 299.99992 * 17 11 10 19 19 N 1.46500 * 109.47007 * 59.99903 * 17 11 10 20 20 C 1.34779 * 119.99793 * 205.00228 * 19 17 11 21 21 O 1.21555 * 120.00348 * 359.97438 * 20 19 17 22 22 C 1.47823 * 119.99733 * 180.02562 * 20 19 17 23 23 C 1.41577 * 120.37811 * 359.97438 * 22 20 19 24 24 C 1.34810 * 120.11989 * 180.02562 * 23 22 20 25 25 N 1.36062 * 120.82684 * 0.02562 * 24 23 22 26 26 N 1.40249 * 133.73377 * 179.97438 * 25 24 23 27 27 N 1.28966 * 107.02266 * 180.02562 * 26 25 24 28 28 N 1.28541 * 110.84255 * 0.02562 * 27 26 25 29 29 C 1.32611 * 110.18654 * 359.97438 * 28 27 26 30 30 C 1.38457 * 120.37203 * 179.72464 * 22 20 19 31 31 H 0.96992 * 119.99693 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00618 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47101 * 60.00120 * 10 9 7 34 34 H 1.09001 * 109.47363 * 299.99361 * 10 9 7 35 35 H 1.08992 * 109.47063 * 59.99950 * 13 11 10 36 36 H 1.09004 * 109.46733 * 299.99664 * 13 11 10 37 37 H 1.09002 * 109.47398 * 59.99826 * 14 13 11 38 38 H 1.09001 * 109.47194 * 180.02562 * 14 13 11 39 39 H 1.08996 * 109.47853 * 180.02562 * 15 14 13 40 40 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 41 41 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 42 42 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 43 43 H 0.97004 * 120.00223 * 25.00137 * 19 17 11 44 44 H 1.08005 * 119.93757 * 359.97438 * 23 22 20 45 45 H 1.08006 * 119.58831 * 179.97438 * 24 23 22 46 46 H 1.08000 * 120.52494 * 359.97438 * 30 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 -0.0001 12 1 0.3793 -4.7131 0.8415 13 6 0.2695 -4.8109 -1.3078 14 6 -0.7252 -5.9735 -1.3081 15 6 0.0350 -7.2952 -1.1821 16 6 0.8294 -7.3041 0.1255 17 6 1.8245 -6.1412 0.1256 18 1 2.5089 -6.2479 -0.7160 19 7 2.5850 -6.1496 1.3777 20 6 3.6846 -6.9204 1.4930 21 8 4.0450 -7.6090 0.5584 22 6 4.4517 -6.9294 2.7566 23 6 4.0388 -6.1310 3.8505 24 6 4.7426 -6.1427 5.0003 25 7 5.8546 -6.9160 5.1292 26 7 6.7691 -7.1333 6.1701 27 7 7.6411 -7.9786 5.7363 28 7 7.3802 -8.3244 4.5261 29 6 6.2903 -7.7025 4.0973 30 6 5.5792 -7.7226 2.8855 31 1 -0.4849 0.8400 0.0004 32 1 0.3555 -2.3881 0.0005 33 1 2.6847 -3.7145 0.8905 34 1 2.6846 -3.7146 -0.8895 35 1 0.9539 -4.9176 -2.1493 36 1 -0.2726 -3.8695 -1.3973 37 1 -1.4097 -5.8664 -0.4665 38 1 -1.2908 -5.9675 -2.2399 39 1 -0.6734 -8.1235 -1.1828 40 1 0.7195 -7.4023 -2.0237 41 1 1.3714 -8.2455 0.2150 42 1 0.1450 -7.1969 0.9670 43 1 2.2973 -5.6004 2.1237 44 1 3.1589 -5.5107 3.7633 45 1 4.4201 -5.5300 5.8292 46 1 5.9100 -8.3430 2.0658 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498493859.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:47 Heat of formation + Delta-G solvation = 89.692920 kcal Electronic energy + Delta-G solvation = -29645.070069 eV Core-core repulsion = 25571.602463 eV Total energy + Delta-G solvation = -4073.467606 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.59212 -41.56647 -39.96730 -38.99349 -36.38159 -35.44283 -35.16186 -33.66627 -33.34962 -31.67935 -31.16958 -30.50528 -27.14877 -26.37418 -25.93808 -24.68377 -24.00725 -23.46596 -21.98990 -21.87307 -20.99212 -19.83809 -19.33355 -19.00997 -18.13591 -18.09133 -17.06002 -16.70871 -16.39760 -16.15115 -16.13989 -15.58943 -15.45152 -15.17018 -15.04124 -14.80111 -14.55846 -14.44910 -14.24482 -14.02136 -13.74559 -13.60737 -13.29284 -13.11022 -12.94564 -12.77879 -12.72475 -12.62445 -12.31575 -12.16087 -12.04202 -11.87485 -11.81955 -11.58013 -11.35923 -11.33663 -11.16067 -11.03299 -10.86174 -10.08557 -9.81211 -8.93425 -7.92477 -5.19105 -1.10917 -0.75994 0.55773 0.87366 1.32931 1.48356 1.50570 1.58624 1.75256 2.22350 2.54293 2.57697 2.86398 3.21307 3.41976 3.42499 3.58916 3.70248 3.81888 3.91145 3.97700 4.04358 4.15419 4.29447 4.32384 4.44420 4.48555 4.52831 4.54585 4.58562 4.62449 4.65655 4.80829 4.90243 4.95341 5.09896 5.17958 5.19112 5.20225 5.28793 5.34619 5.37238 5.47251 5.51039 5.54372 5.64873 6.30662 6.39187 7.02130 7.07222 7.38453 8.15258 8.38128 9.30791 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.008741 B = 0.003034 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.349777 B = 9227.109397 C =11869.609222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.298 1.298 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.739 5.739 10 C 0.157 3.843 11 C -0.085 4.085 12 H 0.087 0.913 13 C -0.107 4.107 14 C -0.115 4.115 15 C -0.112 4.112 16 C -0.119 4.119 17 C 0.162 3.838 18 H 0.074 0.926 19 N -0.696 5.696 20 C 0.564 3.436 21 O -0.556 6.556 22 C -0.056 4.056 23 C -0.096 4.096 24 C 0.112 3.888 25 N -0.293 5.293 26 N -0.123 5.123 27 N -0.031 5.031 28 N -0.342 5.342 29 C 0.227 3.773 30 C -0.032 4.032 31 H 0.250 0.750 32 H 0.377 0.623 33 H 0.033 0.967 34 H 0.003 0.997 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.416 0.584 44 H 0.211 0.789 45 H 0.228 0.772 46 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.465 -16.719 6.710 18.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.262 4.262 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.226 1.226 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.382 5.382 10 C 0.030 3.970 11 C -0.104 4.104 12 H 0.105 0.895 13 C -0.145 4.145 14 C -0.152 4.152 15 C -0.150 4.150 16 C -0.158 4.158 17 C 0.057 3.943 18 H 0.092 0.908 19 N -0.348 5.348 20 C 0.350 3.650 21 O -0.434 6.434 22 C -0.067 4.067 23 C -0.119 4.119 24 C -0.014 4.014 25 N -0.073 5.073 26 N -0.106 5.106 27 N -0.024 5.024 28 N -0.204 5.204 29 C -0.025 4.025 30 C -0.056 4.056 31 H 0.059 0.941 32 H 0.209 0.791 33 H 0.051 0.949 34 H 0.021 0.979 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.255 0.745 44 H 0.228 0.772 45 H 0.245 0.755 46 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 2.069 -17.488 7.156 19.009 hybrid contribution -0.480 1.808 -0.356 1.905 sum 1.589 -15.680 6.800 17.165 Atomic orbital electron populations 1.69784 1.06319 1.25820 1.59663 1.25409 0.96255 1.00574 1.04011 0.85225 0.78247 0.80612 0.76585 1.19443 1.22566 1.21949 1.19582 0.91296 0.85459 1.40714 0.91093 1.42524 1.05664 1.00820 1.89204 1.20834 0.93699 0.84855 0.97595 1.21445 0.96917 0.92355 0.99727 0.89497 1.21441 0.97969 0.98810 0.96274 1.21544 0.97481 0.93723 1.02485 1.21474 0.98953 0.97570 0.97023 1.21855 0.97510 0.97145 0.99262 1.20945 0.92665 0.94675 0.86020 0.90800 1.45886 1.26398 1.44893 1.17599 1.17886 0.80622 0.80071 0.86431 1.90836 1.69177 1.42861 1.40544 1.20300 0.94841 0.96512 0.95097 1.21664 1.01937 0.99062 0.89210 1.22428 0.82946 0.93765 1.02265 1.49190 1.19732 1.27886 1.10472 1.82709 0.99894 1.20149 1.07859 1.77848 1.16036 1.04669 1.03821 1.75137 1.14454 1.25882 1.04955 1.22811 0.94174 0.92979 0.92576 1.20778 0.92396 0.99090 0.93334 0.94092 0.79065 0.94926 0.97855 0.92829 0.93196 0.91211 0.91514 0.90160 0.92345 0.91770 0.90091 0.74540 0.77226 0.75529 0.80221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.47 13.06 21.65 0.28 -55.19 16 2 C -0.07 -3.77 5.50 84.86 0.47 -3.31 16 3 Si 0.96 43.92 29.55 68.60 2.03 45.95 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 7 C -0.24 -12.31 9.99 84.04 0.84 -11.47 16 8 H 0.07 3.58 7.83 -2.91 -0.02 3.55 16 9 N -0.74 -33.16 5.33 -343.45 -1.83 -34.99 16 10 C 0.16 5.22 5.56 86.38 0.48 5.70 16 11 C -0.09 -2.06 1.80 -10.79 -0.02 -2.08 16 12 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 13 C -0.11 -2.75 5.08 30.60 0.16 -2.60 16 14 C -0.11 -2.20 5.92 30.59 0.18 -2.02 16 15 C -0.11 -1.84 5.92 30.59 0.18 -1.65 16 16 C -0.12 -1.94 5.50 30.61 0.17 -1.78 16 17 C 0.16 3.19 1.90 45.01 0.09 3.28 16 18 H 0.07 1.81 7.58 -2.39 -0.02 1.79 16 19 N -0.70 -10.82 4.26 -445.35 -1.90 -12.71 16 20 C 0.56 10.20 7.74 86.78 0.67 10.87 16 21 O -0.56 -14.26 16.03 -3.89 -0.06 -14.32 16 22 C -0.06 -0.76 5.90 -19.87 -0.12 -0.88 16 23 C -0.10 -0.67 9.48 22.31 0.21 -0.46 16 24 C 0.11 0.98 11.19 83.25 0.93 1.92 16 25 N -0.29 -5.40 3.94 -193.23 -0.76 -6.16 16 26 N -0.12 -2.97 13.98 37.02 0.52 -2.45 16 27 N -0.03 -0.86 13.35 37.02 0.49 -0.37 16 28 N -0.34 -9.22 12.27 -55.73 -0.68 -9.90 16 29 C 0.23 4.83 8.02 134.06 1.08 5.91 16 30 C -0.03 -0.54 9.70 22.88 0.22 -0.32 16 31 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 32 H 0.38 17.98 6.85 -92.71 -0.64 17.34 16 33 H 0.03 1.00 7.31 -2.39 -0.02 0.99 16 34 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.05 1.60 7.18 -2.39 -0.02 1.58 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.42 4.22 6.46 -92.71 -0.60 3.62 16 44 H 0.21 -0.04 6.46 -2.91 -0.02 -0.05 16 45 H 0.23 0.21 8.06 -2.91 -0.02 0.19 16 46 H 0.18 3.03 7.67 -2.91 -0.02 3.01 16 Total: -1.00 -73.62 379.30 3.42 -70.20 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -0.20 Total: 18.84 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 5.53 Total: 1.11 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -3.88 Total: -121.77 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.06 Total: -14.32 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -73.62 3.42 -70.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498493859.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.891 kcal (2) G-P(sol) polarization free energy of solvation -73.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds