Wall clock time and date at job start Wed Apr 1 2020 04:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00163 * 2 1 4 4 H 1.48507 * 109.47030 * 239.99477 * 3 2 1 5 5 H 1.48495 * 109.47464 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47308 * 120.00168 * 3 2 1 7 7 C 1.38813 * 119.99537 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99950 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00408 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00458 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47484 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47153 * 55.00066 * 11 10 9 13 13 C 1.53002 * 109.46817 * 295.00296 * 11 10 9 14 14 C 1.53006 * 109.46711 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47445 * 59.99695 * 14 13 11 16 16 C 1.53002 * 109.47092 * 300.00075 * 15 14 13 17 17 C 1.53000 * 109.47060 * 175.00385 * 11 10 9 18 18 H 1.08992 * 109.47399 * 59.99823 * 17 11 10 19 19 N 1.46500 * 109.47023 * 299.99760 * 17 11 10 20 20 C 1.34777 * 120.00075 * 155.00453 * 19 17 11 21 21 O 1.21563 * 119.99920 * 359.97438 * 20 19 17 22 22 C 1.47823 * 119.99987 * 179.97438 * 20 19 17 23 23 C 1.41574 * 120.37343 * 359.97438 * 22 20 19 24 24 C 1.34823 * 120.11112 * 179.97438 * 23 22 20 25 25 N 1.36051 * 120.82894 * 0.02713 * 24 23 22 26 26 N 1.40252 * 133.73276 * 180.02562 * 25 24 23 27 27 N 1.28970 * 107.02552 * 179.97438 * 26 25 24 28 28 N 1.28545 * 110.84302 * 359.97438 * 27 26 25 29 29 C 1.32622 * 110.18341 * 0.02562 * 28 27 26 30 30 C 1.38462 * 120.37131 * 179.71849 * 22 20 19 31 31 H 0.97002 * 119.99299 * 0.02562 * 1 2 3 32 32 H 0.97005 * 119.99958 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.46667 * 60.00304 * 10 9 7 34 34 H 1.09008 * 109.47241 * 300.00661 * 10 9 7 35 35 H 1.09002 * 109.47075 * 299.99262 * 13 11 10 36 36 H 1.08996 * 109.47407 * 60.00219 * 13 11 10 37 37 H 1.09001 * 109.46726 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.46589 * 299.99365 * 14 13 11 39 39 H 1.09002 * 109.47045 * 59.99942 * 15 14 13 40 40 H 1.09000 * 109.47140 * 179.97438 * 15 14 13 41 41 H 1.09000 * 109.46497 * 180.02562 * 16 15 14 42 42 H 1.09002 * 109.47067 * 299.99853 * 16 15 14 43 43 H 0.97006 * 120.00223 * 335.00118 * 19 17 11 44 44 H 1.07993 * 119.94448 * 359.97438 * 23 22 20 45 45 H 1.08006 * 119.58157 * 179.97438 * 24 23 22 46 46 H 1.08003 * 120.52037 * 0.02562 * 30 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6569 0.0016 11 6 1.0636 -4.8197 0.0022 12 1 0.3792 -4.7130 -0.8393 13 6 0.2693 -4.8108 1.3099 14 6 -0.7245 -5.9741 1.3108 15 6 0.0366 -7.2954 1.1854 16 6 0.8310 -7.3042 -0.1223 17 6 1.8244 -6.1412 -0.1234 18 1 2.5088 -6.2479 0.7181 19 7 2.5849 -6.1497 -1.3755 20 6 3.6844 -6.9206 -1.4909 21 8 4.0453 -7.6085 -0.5558 22 6 4.4515 -6.9296 -2.7545 23 6 4.0380 -6.1320 -3.8486 24 6 4.7419 -6.1438 -4.9985 25 7 5.8537 -6.9172 -5.1274 26 7 6.7682 -7.1346 -6.1683 27 7 7.6402 -7.9800 -5.7345 28 7 7.3793 -8.3258 -4.5243 29 6 6.2893 -7.7037 -4.0955 30 6 5.5855 -7.7142 -2.8795 31 1 -0.4849 0.8401 -0.0004 32 1 0.3555 -2.3881 0.0016 33 1 2.6852 -3.7142 0.8912 34 1 2.6840 -3.7150 -0.8888 35 1 0.9538 -4.9176 2.1515 36 1 -0.2726 -3.8694 1.3994 37 1 -1.2901 -5.9680 2.2426 38 1 -1.4090 -5.8678 0.4692 39 1 0.7211 -7.4017 2.0270 40 1 -0.6714 -8.1241 1.1865 41 1 1.3728 -8.2457 -0.2118 42 1 0.1465 -7.1979 -0.9639 43 1 2.2972 -5.6006 -2.1215 44 1 3.1573 -5.5130 -3.7620 45 1 4.4185 -5.5323 -5.8279 46 1 5.9215 -8.3277 -2.0565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498493860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:53 Heat of formation + Delta-G solvation = 111.655463 kcal Electronic energy + Delta-G solvation = -29644.485996 eV Core-core repulsion = 25571.970758 eV Total energy + Delta-G solvation = -4072.515239 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.78526 -40.70412 -39.11116 -38.09794 -34.74058 -34.56294 -34.38451 -32.61082 -31.99362 -30.95610 -29.82433 -29.45436 -26.00867 -25.20242 -25.14794 -23.26393 -23.17425 -22.45887 -21.07612 -20.73931 -20.08899 -19.00282 -18.42074 -17.64093 -17.27501 -17.04757 -16.22756 -15.56196 -15.44309 -15.36250 -14.85524 -14.53569 -14.36117 -14.05449 -13.93979 -13.73768 -13.53849 -13.34472 -13.14325 -12.93122 -12.79884 -12.57925 -12.43783 -11.99863 -11.92650 -11.65772 -11.46450 -11.25022 -10.97425 -10.96976 -10.81406 -10.65880 -10.63508 -10.38435 -10.27563 -10.14318 -10.05111 -9.75232 -9.22025 -9.08269 -8.94647 -7.01776 -5.85818 -3.14627 -0.39960 -0.05712 1.24618 1.65744 2.11531 2.56768 2.96343 3.28124 3.37357 3.42942 3.43158 3.59863 3.82389 4.07328 4.36677 4.42531 4.49899 4.69304 4.76861 4.81190 4.91951 4.97164 5.12325 5.14268 5.22000 5.24099 5.42375 5.43526 5.48504 5.50933 5.54182 5.61094 5.76804 5.81894 5.95341 6.00130 6.06512 6.13090 6.17552 6.24643 6.31091 6.45146 6.56572 6.64511 6.77022 7.16932 7.61052 7.80689 7.93209 8.33231 9.44763 10.01349 10.35866 11.36725 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.008741 B = 0.003034 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.650855 B = 9226.092842 C =11868.256078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.068 0.932 9 N -0.730 5.730 10 C 0.158 3.842 11 C -0.100 4.100 12 H 0.076 0.924 13 C -0.107 4.107 14 C -0.122 4.122 15 C -0.115 4.115 16 C -0.126 4.126 17 C 0.153 3.847 18 H 0.093 0.907 19 N -0.705 5.705 20 C 0.560 3.440 21 O -0.522 6.522 22 C -0.066 4.066 23 C -0.113 4.113 24 C 0.110 3.890 25 N -0.294 5.294 26 N -0.107 5.107 27 N -0.008 5.008 28 N -0.314 5.314 29 C 0.237 3.763 30 C -0.025 4.025 31 H 0.256 0.744 32 H 0.384 0.616 33 H 0.019 0.981 34 H 0.017 0.983 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.403 0.597 44 H 0.175 0.825 45 H 0.190 0.810 46 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 -16.523 -5.799 17.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.086 0.914 9 N -0.375 5.375 10 C 0.030 3.970 11 C -0.120 4.120 12 H 0.095 0.905 13 C -0.145 4.145 14 C -0.160 4.160 15 C -0.153 4.153 16 C -0.165 4.165 17 C 0.049 3.951 18 H 0.111 0.889 19 N -0.356 5.356 20 C 0.345 3.655 21 O -0.398 6.398 22 C -0.078 4.078 23 C -0.137 4.137 24 C -0.017 4.017 25 N -0.075 5.075 26 N -0.091 5.091 27 N -0.001 5.001 28 N -0.174 5.174 29 C -0.017 4.017 30 C -0.049 4.049 31 H 0.066 0.934 32 H 0.218 0.782 33 H 0.037 0.963 34 H 0.034 0.966 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.239 0.761 44 H 0.192 0.808 45 H 0.207 0.793 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 3.008 -17.266 -6.226 18.599 hybrid contribution -0.702 1.738 -0.025 1.875 sum 2.306 -15.528 -6.251 16.897 Atomic orbital electron populations 1.69641 1.05078 1.25843 1.57552 1.24719 0.95503 0.97649 1.02868 0.86295 0.78565 0.83577 0.77892 1.21299 1.21655 1.21242 1.19153 0.90951 0.84174 1.43024 0.91372 1.42343 1.05801 0.99814 1.89515 1.20670 0.92989 0.85410 0.97898 1.21615 0.97742 0.93116 0.99493 0.90533 1.21499 0.97689 0.98972 0.96366 1.21608 0.98092 0.94457 1.01817 1.21488 0.98812 0.97764 0.97252 1.21893 0.97813 0.98236 0.98569 1.21137 0.92801 0.95330 0.85829 0.88911 1.46011 1.26850 1.44980 1.17752 1.17719 0.80772 0.80680 0.86301 1.90840 1.68346 1.41472 1.39144 1.20407 0.95531 0.96574 0.95277 1.21275 1.01526 1.00111 0.90752 1.21619 0.84553 0.94636 1.00892 1.49051 1.19283 1.27784 1.11348 1.82834 0.99300 1.19837 1.07082 1.77898 1.15081 1.03779 1.03373 1.75264 1.12847 1.24583 1.04727 1.22768 0.94325 0.92684 0.91920 1.20786 0.91924 0.98360 0.93806 0.93418 0.78180 0.96301 0.96551 0.91931 0.90095 0.91994 0.91974 0.91785 0.92030 0.91642 0.91733 0.76103 0.80828 0.79305 0.80141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.71 13.06 55.49 0.72 -25.99 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.51 29.55 -169.99 -5.02 16.48 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.35 9.99 -15.06 -0.15 -6.50 16 8 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 9 N -0.73 -16.63 5.33 -59.91 -0.32 -16.95 16 10 C 0.16 2.74 5.57 -4.05 -0.02 2.72 16 11 C -0.10 -1.30 1.80 -90.62 -0.16 -1.47 16 12 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 13 C -0.11 -1.42 5.08 -26.73 -0.14 -1.55 16 14 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 15 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 16 C -0.13 -1.22 5.49 -26.75 -0.15 -1.37 16 17 C 0.15 1.68 1.90 -67.95 -0.13 1.55 16 18 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 19 N -0.71 -6.56 4.26 -54.78 -0.23 -6.79 16 20 C 0.56 5.71 7.74 -12.34 -0.10 5.61 16 21 O -0.52 -7.00 16.03 5.31 0.09 -6.91 16 22 C -0.07 -0.53 5.90 -104.62 -0.62 -1.15 16 23 C -0.11 -0.63 9.48 -39.52 -0.37 -1.00 16 24 C 0.11 0.68 11.19 -16.89 -0.19 0.49 16 25 N -0.29 -2.95 3.94 -12.43 -0.05 -3.00 16 26 N -0.11 -1.33 13.98 60.35 0.84 -0.48 16 27 N -0.01 -0.11 13.35 60.35 0.81 0.69 16 28 N -0.31 -4.13 12.27 31.03 0.38 -3.75 16 29 C 0.24 2.58 8.02 -156.35 -1.25 1.33 16 30 C -0.02 -0.22 9.70 -38.65 -0.37 -0.60 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.38 9.19 6.85 -40.82 -0.28 8.91 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.02 0.28 7.30 -51.92 -0.38 -0.10 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.29 7.18 -51.93 -0.37 0.91 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.40 2.91 6.46 -40.82 -0.26 2.65 16 44 H 0.17 0.49 6.46 -52.49 -0.34 0.15 16 45 H 0.19 0.55 8.06 -52.48 -0.42 0.13 16 46 H 0.18 1.52 7.67 -52.48 -0.40 1.11 16 LS Contribution 379.29 15.07 5.72 5.72 Total: -1.00 -33.12 379.29 -7.34 -40.46 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.20 Total: 5.56 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -4.07 Total: -5.04 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 2.15 Total: -56.26 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: 0.09 Total: -6.91 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.12 -7.34 -40.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498493860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.118 kcal (2) G-P(sol) polarization free energy of solvation -33.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds