Wall clock time and date at job start Wed Apr 1 2020 04:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00163 * 2 1 4 4 H 1.48507 * 109.47030 * 239.99477 * 3 2 1 5 5 H 1.48495 * 109.47464 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47308 * 120.00168 * 3 2 1 7 7 C 1.38813 * 119.99537 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99950 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00408 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00458 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47484 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47153 * 55.00066 * 11 10 9 13 13 C 1.53002 * 109.46817 * 295.00296 * 11 10 9 14 14 C 1.53006 * 109.46711 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47445 * 59.99695 * 14 13 11 16 16 C 1.53002 * 109.47092 * 300.00075 * 15 14 13 17 17 C 1.53000 * 109.47060 * 175.00385 * 11 10 9 18 18 H 1.08992 * 109.47399 * 59.99823 * 17 11 10 19 19 N 1.46500 * 109.47023 * 299.99760 * 17 11 10 20 20 C 1.34777 * 120.00075 * 155.00453 * 19 17 11 21 21 O 1.21563 * 119.99920 * 359.97438 * 20 19 17 22 22 C 1.47823 * 119.99987 * 179.97438 * 20 19 17 23 23 C 1.41574 * 120.37343 * 359.97438 * 22 20 19 24 24 C 1.34823 * 120.11112 * 179.97438 * 23 22 20 25 25 N 1.36051 * 120.82894 * 0.02713 * 24 23 22 26 26 N 1.40252 * 133.73276 * 180.02562 * 25 24 23 27 27 N 1.28970 * 107.02552 * 179.97438 * 26 25 24 28 28 N 1.28545 * 110.84302 * 359.97438 * 27 26 25 29 29 C 1.32622 * 110.18341 * 0.02562 * 28 27 26 30 30 C 1.38462 * 120.37131 * 179.71849 * 22 20 19 31 31 H 0.97002 * 119.99299 * 0.02562 * 1 2 3 32 32 H 0.97005 * 119.99958 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.46667 * 60.00304 * 10 9 7 34 34 H 1.09008 * 109.47241 * 300.00661 * 10 9 7 35 35 H 1.09002 * 109.47075 * 299.99262 * 13 11 10 36 36 H 1.08996 * 109.47407 * 60.00219 * 13 11 10 37 37 H 1.09001 * 109.46726 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.46589 * 299.99365 * 14 13 11 39 39 H 1.09002 * 109.47045 * 59.99942 * 15 14 13 40 40 H 1.09000 * 109.47140 * 179.97438 * 15 14 13 41 41 H 1.09000 * 109.46497 * 180.02562 * 16 15 14 42 42 H 1.09002 * 109.47067 * 299.99853 * 16 15 14 43 43 H 0.97006 * 120.00223 * 335.00118 * 19 17 11 44 44 H 1.07993 * 119.94448 * 359.97438 * 23 22 20 45 45 H 1.08006 * 119.58157 * 179.97438 * 24 23 22 46 46 H 1.08003 * 120.52037 * 0.02562 * 30 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6569 0.0016 11 6 1.0636 -4.8197 0.0022 12 1 0.3792 -4.7130 -0.8393 13 6 0.2693 -4.8108 1.3099 14 6 -0.7245 -5.9741 1.3108 15 6 0.0366 -7.2954 1.1854 16 6 0.8310 -7.3042 -0.1223 17 6 1.8244 -6.1412 -0.1234 18 1 2.5088 -6.2479 0.7181 19 7 2.5849 -6.1497 -1.3755 20 6 3.6844 -6.9206 -1.4909 21 8 4.0453 -7.6085 -0.5558 22 6 4.4515 -6.9296 -2.7545 23 6 4.0380 -6.1320 -3.8486 24 6 4.7419 -6.1438 -4.9985 25 7 5.8537 -6.9172 -5.1274 26 7 6.7682 -7.1346 -6.1683 27 7 7.6402 -7.9800 -5.7345 28 7 7.3793 -8.3258 -4.5243 29 6 6.2893 -7.7037 -4.0955 30 6 5.5855 -7.7142 -2.8795 31 1 -0.4849 0.8401 -0.0004 32 1 0.3555 -2.3881 0.0016 33 1 2.6852 -3.7142 0.8912 34 1 2.6840 -3.7150 -0.8888 35 1 0.9538 -4.9176 2.1515 36 1 -0.2726 -3.8694 1.3994 37 1 -1.2901 -5.9680 2.2426 38 1 -1.4090 -5.8678 0.4692 39 1 0.7211 -7.4017 2.0270 40 1 -0.6714 -8.1241 1.1865 41 1 1.3728 -8.2457 -0.2118 42 1 0.1465 -7.1979 -0.9639 43 1 2.2972 -5.6006 -2.1215 44 1 3.1573 -5.5130 -3.7620 45 1 4.4185 -5.5323 -5.8279 46 1 5.9215 -8.3277 -2.0565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498493860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:52 Heat of formation + Delta-G solvation = 89.871147 kcal Electronic energy + Delta-G solvation = -29645.430635 eV Core-core repulsion = 25571.970758 eV Total energy + Delta-G solvation = -4073.459877 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.59105 -41.56785 -39.96909 -38.99338 -36.37910 -35.44303 -35.16258 -33.66547 -33.35009 -31.67943 -31.16889 -30.50780 -27.14671 -26.37386 -25.93870 -24.68116 -24.00784 -23.46547 -21.99094 -21.87259 -20.99220 -19.83812 -19.33208 -19.00855 -18.13756 -18.09029 -17.06155 -16.70629 -16.39750 -16.15738 -16.13455 -15.58628 -15.45273 -15.17516 -15.03500 -14.80029 -14.55626 -14.45024 -14.24542 -14.02143 -13.74692 -13.60989 -13.28529 -13.11056 -12.92678 -12.75906 -12.69397 -12.64593 -12.31623 -12.18655 -12.08773 -11.88179 -11.81267 -11.57982 -11.35915 -11.33700 -11.15959 -11.02627 -10.84727 -10.08718 -9.81236 -8.93319 -7.92002 -5.18779 -1.11020 -0.76092 0.55703 0.87271 1.32839 1.49795 1.51157 1.57064 1.75182 2.22250 2.54208 2.58126 2.86328 3.21225 3.42046 3.42434 3.58815 3.70163 3.81977 3.91089 3.97747 4.04301 4.15467 4.29389 4.32290 4.44462 4.48526 4.52766 4.54612 4.58648 4.62424 4.65602 4.80736 4.90199 4.95296 5.09898 5.17916 5.19058 5.20172 5.28810 5.34563 5.37225 5.47209 5.50895 5.53977 5.64818 6.30791 6.39092 7.02039 7.07137 7.38624 8.15584 8.38474 9.30847 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.008741 B = 0.003034 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.650855 B = 9226.092842 C =11868.256078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.964 3.036 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.284 1.284 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.739 5.739 10 C 0.157 3.843 11 C -0.085 4.085 12 H 0.087 0.913 13 C -0.107 4.107 14 C -0.115 4.115 15 C -0.112 4.112 16 C -0.119 4.119 17 C 0.162 3.838 18 H 0.074 0.926 19 N -0.696 5.696 20 C 0.564 3.436 21 O -0.556 6.556 22 C -0.056 4.056 23 C -0.096 4.096 24 C 0.112 3.888 25 N -0.293 5.293 26 N -0.123 5.123 27 N -0.031 5.031 28 N -0.342 5.342 29 C 0.227 3.773 30 C -0.032 4.032 31 H 0.250 0.750 32 H 0.377 0.623 33 H 0.003 0.997 34 H 0.033 0.967 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.416 0.584 44 H 0.211 0.789 45 H 0.228 0.772 46 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.417 -16.634 -6.706 17.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.262 4.262 3 Si 0.794 3.206 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.211 1.211 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.382 5.382 10 C 0.030 3.970 11 C -0.104 4.104 12 H 0.105 0.895 13 C -0.145 4.145 14 C -0.152 4.152 15 C -0.150 4.150 16 C -0.158 4.158 17 C 0.057 3.943 18 H 0.092 0.908 19 N -0.348 5.348 20 C 0.350 3.650 21 O -0.434 6.434 22 C -0.067 4.067 23 C -0.119 4.119 24 C -0.014 4.014 25 N -0.073 5.073 26 N -0.106 5.106 27 N -0.024 5.024 28 N -0.204 5.204 29 C -0.025 4.025 30 C -0.056 4.056 31 H 0.059 0.941 32 H 0.209 0.791 33 H 0.021 0.979 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.255 0.745 44 H 0.228 0.772 45 H 0.245 0.755 46 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 2.005 -17.394 -7.153 18.914 hybrid contribution -0.453 1.789 0.356 1.880 sum 1.552 -15.605 -6.797 17.091 Atomic orbital electron populations 1.69777 1.06322 1.25979 1.59497 1.25410 0.96253 1.00588 1.03924 0.85361 0.77307 0.79935 0.78044 1.20303 1.22349 1.21079 1.19516 0.91296 0.85498 1.41049 0.91122 1.42506 1.05647 1.00795 1.89248 1.20831 0.93698 0.84863 0.97577 1.21444 0.96914 0.92349 0.99728 0.89496 1.21443 0.97977 0.98808 0.96269 1.21545 0.97484 0.93716 1.02489 1.21475 0.98948 0.97577 0.97016 1.21837 0.97535 0.97143 0.99267 1.20922 0.92676 0.94674 0.86020 0.90815 1.45887 1.26415 1.44876 1.17596 1.17888 0.80630 0.80068 0.86429 1.90838 1.69167 1.42903 1.40519 1.20299 0.94732 0.96599 0.95117 1.21665 1.01952 0.99018 0.89234 1.22428 0.82928 0.93792 1.02259 1.49187 1.19737 1.27849 1.10497 1.82711 0.99865 1.20146 1.07896 1.77850 1.16028 1.04655 1.03836 1.75144 1.14395 1.25931 1.04954 1.22810 0.94196 0.93000 0.92534 1.20777 0.92424 0.99109 0.93288 0.94074 0.79068 0.97870 0.94956 0.92844 0.93185 0.91509 0.91208 0.92346 0.90153 0.91766 0.90098 0.74541 0.77233 0.75531 0.80219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -55.50 13.06 21.65 0.28 -55.22 16 2 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 3 Si 0.96 43.88 29.55 68.60 2.03 45.91 16 4 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.24 -12.50 9.99 84.03 0.84 -11.66 16 8 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 9 N -0.74 -33.22 5.33 -343.46 -1.83 -35.05 16 10 C 0.16 5.24 5.57 86.38 0.48 5.72 16 11 C -0.09 -2.06 1.80 -10.79 -0.02 -2.08 16 12 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 13 C -0.11 -2.76 5.08 30.60 0.16 -2.60 16 14 C -0.11 -2.20 5.92 30.60 0.18 -2.02 16 15 C -0.11 -1.84 5.92 30.59 0.18 -1.66 16 16 C -0.12 -1.95 5.49 30.58 0.17 -1.78 16 17 C 0.16 3.20 1.90 44.98 0.09 3.29 16 18 H 0.07 1.81 7.58 -2.39 -0.02 1.79 16 19 N -0.70 -10.85 4.26 -445.50 -1.90 -12.75 16 20 C 0.56 10.22 7.74 86.78 0.67 10.90 16 21 O -0.56 -14.29 16.03 -3.91 -0.06 -14.35 16 22 C -0.06 -0.76 5.90 -19.86 -0.12 -0.88 16 23 C -0.10 -0.68 9.48 22.31 0.21 -0.47 16 24 C 0.11 0.99 11.19 83.25 0.93 1.92 16 25 N -0.29 -5.41 3.94 -193.23 -0.76 -6.17 16 26 N -0.12 -2.97 13.98 37.02 0.52 -2.46 16 27 N -0.03 -0.86 13.35 37.02 0.49 -0.37 16 28 N -0.34 -9.23 12.27 -55.73 -0.68 -9.91 16 29 C 0.23 4.84 8.02 134.05 1.07 5.91 16 30 C -0.03 -0.55 9.70 22.88 0.22 -0.32 16 31 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 32 H 0.38 18.01 6.85 -92.70 -0.64 17.37 16 33 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.03 1.00 7.30 -2.38 -0.02 0.98 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.05 1.61 7.18 -2.39 -0.02 1.59 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.42 4.24 6.46 -92.70 -0.60 3.64 16 44 H 0.21 -0.02 6.46 -2.91 -0.02 -0.04 16 45 H 0.23 0.22 8.06 -2.91 -0.02 0.20 16 46 H 0.18 3.04 7.67 -2.91 -0.02 3.02 16 Total: -1.00 -73.55 379.29 3.42 -70.13 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -0.20 Total: 19.23 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 5.53 Total: 1.00 kcal Atomic # 7 Polarization: -118.04 SS G_CDS: -3.88 Total: -121.92 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.06 Total: -14.35 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -73.55 3.42 -70.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498493860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.004 kcal (2) G-P(sol) polarization free energy of solvation -73.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds