Wall clock time and date at job start Wed Apr 1 2020 04:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 120.00099 * 2 1 4 4 H 1.48501 * 109.47128 * 240.00227 * 3 2 1 5 5 H 1.48507 * 109.47370 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47225 * 120.00159 * 3 2 1 7 7 C 1.38818 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99986 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99487 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99655 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47088 * 185.48623 * 10 9 7 12 12 H 1.08999 * 109.70230 * 301.62752 * 11 10 9 13 13 C 1.53626 * 109.66115 * 62.22713 * 11 10 9 14 14 C 1.53038 * 109.24008 * 174.54904 * 13 11 10 15 15 C 1.53041 * 109.53829 * 298.50556 * 14 13 11 16 16 C 1.53198 * 109.31006 * 61.36640 * 15 14 13 17 17 N 1.46923 * 109.58528 * 181.27031 * 11 10 9 18 18 C 1.34778 * 120.63253 * 6.63779 * 17 11 10 19 19 O 1.21286 * 119.99635 * 354.64023 * 18 17 11 20 20 C 1.50704 * 120.00245 * 174.65302 * 18 17 11 21 21 C 1.50700 * 109.46705 * 179.97438 * 20 18 17 22 22 N 1.32615 * 125.18452 * 90.02569 * 21 20 18 23 23 C 1.32828 * 109.75632 * 179.97438 * 22 21 20 24 24 N 1.33819 * 132.50563 * 180.02562 * 23 22 21 25 25 C 1.31341 * 120.86527 * 179.97438 * 24 23 22 26 26 C 1.40045 * 120.31637 * 359.97438 * 25 24 23 27 27 C 1.35775 * 119.23713 * 0.02562 * 26 25 24 28 28 N 1.35977 * 119.02459 * 359.97438 * 27 26 25 29 29 N 1.31184 * 125.18532 * 269.71006 * 21 20 18 30 30 H 0.97000 * 119.99563 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00840 * 0.02562 * 9 7 2 32 32 H 1.09003 * 109.47012 * 65.48764 * 10 9 7 33 33 H 1.09001 * 109.46957 * 305.48603 * 10 9 7 34 34 H 1.08992 * 109.63930 * 54.55262 * 13 11 10 35 35 H 1.09001 * 109.45630 * 294.42889 * 13 11 10 36 36 H 1.09000 * 109.46358 * 178.48488 * 14 13 11 37 37 H 1.09002 * 109.45317 * 58.52278 * 14 13 11 38 38 H 1.08990 * 109.49656 * 301.41680 * 15 14 13 39 39 H 1.08996 * 109.52284 * 181.33042 * 15 14 13 40 40 H 1.08995 * 109.58164 * 185.57911 * 16 15 14 41 41 H 1.09005 * 109.58566 * 65.15361 * 16 15 14 42 42 H 1.08994 * 109.46769 * 59.99460 * 20 18 17 43 43 H 1.09000 * 109.46505 * 299.99250 * 20 18 17 44 44 H 1.08004 * 119.84348 * 180.02562 * 25 24 23 45 45 H 1.08001 * 120.38102 * 179.97438 * 26 25 24 46 46 H 1.07999 * 120.48642 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0695 -4.8164 -0.1385 12 1 0.3514 -4.7866 0.6810 13 6 0.3300 -4.7084 -1.4807 14 6 -0.5548 -5.9427 -1.6698 15 6 0.3189 -7.1988 -1.7014 16 6 1.0595 -7.3345 -0.3672 17 7 1.7987 -6.0915 -0.1082 18 6 3.1197 -6.1210 0.1579 19 8 3.7371 -5.0842 0.2791 20 6 3.8295 -7.4423 0.3046 21 6 5.2878 -7.1993 0.5969 22 7 5.8137 -7.0733 1.8078 23 6 7.1224 -6.8683 1.7097 24 7 8.0799 -6.6843 2.6263 25 6 9.3295 -6.4981 2.2672 26 6 9.6818 -6.4897 0.9119 27 6 8.7171 -6.6756 -0.0253 28 7 7.4327 -6.8657 0.3788 29 7 6.2313 -7.0859 -0.3074 30 1 -0.4849 0.8401 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6090 -3.7583 0.9345 33 1 2.7563 -3.6732 -0.8373 34 1 1.0535 -4.6513 -2.2939 35 1 -0.2905 -3.8123 -1.4823 36 1 -1.1017 -5.8570 -2.6087 37 1 -1.2616 -6.0127 -0.8430 38 1 1.0425 -7.1182 -2.5125 39 1 -0.3091 -8.0754 -1.8597 40 1 1.7570 -8.1704 -0.4200 41 1 0.3405 -7.5058 0.4340 42 1 3.7345 -8.0104 -0.6208 43 1 3.3832 -8.0054 1.1242 44 1 10.0891 -6.3516 3.0209 45 1 10.7090 -6.3363 0.6154 46 1 8.9662 -6.6724 -1.0762 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501898522.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:40 Heat of formation + Delta-G solvation = 137.987990 kcal Electronic energy + Delta-G solvation = -30055.070097 eV Core-core repulsion = 25983.696722 eV Total energy + Delta-G solvation = -4071.373375 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.11539 -40.39904 -39.06032 -37.20400 -34.89128 -34.69035 -33.04143 -32.47685 -31.79771 -30.92463 -29.80277 -29.37316 -26.12895 -24.99836 -24.38075 -24.05871 -23.12366 -21.87341 -20.98356 -20.56132 -18.95879 -18.64371 -18.31661 -17.21207 -16.88927 -16.58497 -16.40277 -15.73573 -15.38097 -14.89713 -14.48826 -14.36578 -14.16088 -14.00877 -13.70167 -13.49115 -13.34121 -13.21043 -12.93369 -12.83857 -12.81092 -12.67358 -12.20459 -12.14858 -11.85413 -11.55569 -10.98095 -10.88846 -10.77789 -10.64069 -10.49712 -10.35849 -10.33562 -10.27473 -9.98080 -9.86769 -9.60356 -9.04623 -8.83962 -8.72143 -8.28428 -6.70837 -5.62019 -2.87816 0.12180 0.44516 1.63049 2.23370 2.77129 2.91571 3.12163 3.24888 3.54264 3.56993 3.59777 3.64452 3.94614 4.19865 4.47268 4.52254 4.66653 4.73643 4.76255 4.89317 4.94058 5.03344 5.08570 5.14217 5.27210 5.42113 5.43217 5.49635 5.63338 5.72293 5.83584 5.86533 5.87198 5.95590 5.99911 6.04781 6.05637 6.27895 6.30031 6.34721 6.61793 6.80243 7.15190 7.17656 7.35306 7.56819 7.72366 7.87907 8.36939 8.59680 9.68584 10.28032 10.63504 11.61627 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.008413 B = 0.003413 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3327.463872 B = 8202.674676 C =10992.767108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.019 4.019 3 Si 0.905 3.095 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.223 4.223 8 H 0.068 0.932 9 N -0.737 5.737 10 C 0.164 3.836 11 C 0.142 3.858 12 H 0.073 0.927 13 C -0.126 4.126 14 C -0.121 4.121 15 C -0.134 4.134 16 C 0.106 3.894 17 N -0.605 5.605 18 C 0.515 3.485 19 O -0.503 6.503 20 C -0.053 4.053 21 C 0.302 3.698 22 N -0.510 5.510 23 C 0.443 3.557 24 N -0.453 5.453 25 C 0.204 3.796 26 C -0.227 4.227 27 C 0.175 3.825 28 N -0.325 5.325 29 N -0.321 5.321 30 H 0.253 0.747 31 H 0.378 0.622 32 H 0.044 0.956 33 H 0.033 0.967 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.120 0.880 43 H 0.126 0.874 44 H 0.190 0.810 45 H 0.174 0.826 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.972 -23.643 -1.860 27.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.214 4.214 3 Si 0.737 3.263 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.355 4.355 8 H 0.086 0.914 9 N -0.383 5.383 10 C 0.037 3.963 11 C 0.039 3.961 12 H 0.090 0.910 13 C -0.164 4.164 14 C -0.158 4.158 15 C -0.173 4.173 16 C -0.017 4.017 17 N -0.340 5.340 18 C 0.300 3.700 19 O -0.377 6.377 20 C -0.096 4.096 21 C 0.021 3.979 22 N -0.241 5.241 23 C 0.082 3.918 24 N -0.167 5.167 25 C 0.018 3.982 26 C -0.252 4.252 27 C 0.037 3.963 28 N -0.104 5.104 29 N -0.152 5.152 30 H 0.063 0.937 31 H 0.212 0.788 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.138 0.862 43 H 0.144 0.856 44 H 0.207 0.793 45 H 0.192 0.808 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 13.494 -23.113 -1.407 26.801 hybrid contribution 0.639 1.017 -0.832 1.461 sum 14.133 -22.096 -2.239 26.324 Atomic orbital electron populations 1.69649 1.04977 1.25419 1.58877 1.24682 0.95518 0.97428 1.03752 0.86277 0.78484 0.83749 0.77803 1.21476 1.21753 1.21410 1.19186 0.91020 0.84094 1.41203 0.91425 1.42549 1.05666 1.00438 1.89643 1.21273 0.91325 0.83340 1.00334 1.21705 0.94445 0.82630 0.97307 0.90951 1.22005 0.99001 0.98224 0.97165 1.21554 0.97845 0.94499 1.01952 1.21920 0.99307 0.98783 0.97244 1.21771 0.96147 0.86087 0.97690 1.48074 1.07474 1.08036 1.70454 1.19982 0.82175 0.90076 0.77740 1.90899 1.65398 1.33014 1.48359 1.20152 0.85260 0.98502 1.05669 1.23513 0.96245 0.92638 0.85549 1.70681 1.01959 1.27553 1.23908 1.22713 0.92594 0.96760 0.79715 1.68000 0.99980 1.16322 1.32380 1.23581 0.91869 0.87148 0.95643 1.21945 1.01400 1.08482 0.93401 1.22166 0.79497 0.92086 1.02598 1.48759 1.07609 1.44664 1.09412 1.78525 0.88143 1.31665 1.16890 0.93717 0.78809 0.93887 0.94860 0.91741 0.89587 0.91842 0.91829 0.91509 0.90942 0.90039 0.91028 0.86164 0.85614 0.79297 0.80836 0.80062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.67 13.06 55.49 0.72 -28.94 16 2 C -0.02 -0.58 5.50 -17.43 -0.10 -0.67 16 3 Si 0.91 23.96 29.55 -169.99 -5.02 18.94 16 4 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 5 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 7 C -0.22 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.74 -20.36 5.29 -59.90 -0.32 -20.67 16 10 C 0.16 3.89 4.10 -4.04 -0.02 3.87 16 11 C 0.14 2.54 3.03 -67.37 -0.20 2.34 16 12 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 13 C -0.13 -2.05 5.17 -26.39 -0.14 -2.18 16 14 C -0.12 -1.43 5.88 -26.69 -0.16 -1.59 16 15 C -0.13 -1.26 6.08 -26.61 -0.16 -1.42 16 16 C 0.11 1.02 6.32 -3.71 -0.02 0.99 16 17 N -0.61 -8.83 2.97 -164.96 -0.49 -9.32 16 18 C 0.52 8.45 7.60 -10.98 -0.08 8.36 16 19 O -0.50 -10.93 11.44 5.55 0.06 -10.87 16 20 C -0.05 -0.65 4.73 -29.03 -0.14 -0.79 16 21 C 0.30 4.73 6.59 -157.01 -1.03 3.70 16 22 N -0.51 -8.84 11.25 -11.80 -0.13 -8.97 16 23 C 0.44 6.82 8.99 -323.13 -2.91 3.92 16 24 N -0.45 -5.74 10.48 -13.82 -0.14 -5.89 16 25 C 0.20 1.39 11.26 -17.08 -0.19 1.19 16 26 C -0.23 -1.10 10.06 -39.79 -0.40 -1.50 16 27 C 0.17 1.37 11.32 -16.60 -0.19 1.19 16 28 N -0.33 -4.37 3.91 -13.84 -0.05 -4.43 16 29 N -0.32 -4.95 12.78 32.39 0.41 -4.53 16 30 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 31 H 0.38 10.58 6.90 -40.82 -0.28 10.30 16 32 H 0.04 1.14 6.34 -51.93 -0.33 0.81 16 33 H 0.03 0.86 7.13 -51.93 -0.37 0.49 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.60 7.31 -51.93 -0.38 1.22 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.55 5.96 -51.93 -0.31 0.24 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.12 1.06 7.48 -51.93 -0.39 0.67 16 43 H 0.13 1.20 8.11 -51.93 -0.42 0.78 16 44 H 0.19 0.41 8.06 -52.48 -0.42 -0.01 16 45 H 0.17 0.05 8.06 -52.49 -0.42 -0.37 16 46 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 375.21 15.07 5.65 5.65 Total: -1.00 -42.40 375.21 -11.45 -53.84 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.25 Total: 4.77 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: -5.89 Total: 10.41 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: 0.00 Total: -82.75 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.06 Total: -10.87 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -5.02 Total: 18.94 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -42.40 -11.45 -53.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501898522.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.830 kcal (2) G-P(sol) polarization free energy of solvation -42.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds