Wall clock time and date at job start Wed Apr 1 2020 04:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 120.00099 * 2 1 4 4 H 1.48501 * 109.47128 * 240.00227 * 3 2 1 5 5 H 1.48507 * 109.47370 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47225 * 120.00159 * 3 2 1 7 7 C 1.38818 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99986 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99487 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99655 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47088 * 185.48623 * 10 9 7 12 12 H 1.08999 * 109.70230 * 301.62752 * 11 10 9 13 13 C 1.53626 * 109.66115 * 62.22713 * 11 10 9 14 14 C 1.53038 * 109.24008 * 174.54904 * 13 11 10 15 15 C 1.53041 * 109.53829 * 298.50556 * 14 13 11 16 16 C 1.53198 * 109.31006 * 61.36640 * 15 14 13 17 17 N 1.46923 * 109.58528 * 181.27031 * 11 10 9 18 18 C 1.34778 * 120.63253 * 6.63779 * 17 11 10 19 19 O 1.21286 * 119.99635 * 354.64023 * 18 17 11 20 20 C 1.50704 * 120.00245 * 174.65302 * 18 17 11 21 21 C 1.50700 * 109.46705 * 179.97438 * 20 18 17 22 22 N 1.32615 * 125.18452 * 90.02569 * 21 20 18 23 23 C 1.32828 * 109.75632 * 179.97438 * 22 21 20 24 24 N 1.33819 * 132.50563 * 180.02562 * 23 22 21 25 25 C 1.31341 * 120.86527 * 179.97438 * 24 23 22 26 26 C 1.40045 * 120.31637 * 359.97438 * 25 24 23 27 27 C 1.35775 * 119.23713 * 0.02562 * 26 25 24 28 28 N 1.35977 * 119.02459 * 359.97438 * 27 26 25 29 29 N 1.31184 * 125.18532 * 269.71006 * 21 20 18 30 30 H 0.97000 * 119.99563 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00840 * 0.02562 * 9 7 2 32 32 H 1.09003 * 109.47012 * 65.48764 * 10 9 7 33 33 H 1.09001 * 109.46957 * 305.48603 * 10 9 7 34 34 H 1.08992 * 109.63930 * 54.55262 * 13 11 10 35 35 H 1.09001 * 109.45630 * 294.42889 * 13 11 10 36 36 H 1.09000 * 109.46358 * 178.48488 * 14 13 11 37 37 H 1.09002 * 109.45317 * 58.52278 * 14 13 11 38 38 H 1.08990 * 109.49656 * 301.41680 * 15 14 13 39 39 H 1.08996 * 109.52284 * 181.33042 * 15 14 13 40 40 H 1.08995 * 109.58164 * 185.57911 * 16 15 14 41 41 H 1.09005 * 109.58566 * 65.15361 * 16 15 14 42 42 H 1.08994 * 109.46769 * 59.99460 * 20 18 17 43 43 H 1.09000 * 109.46505 * 299.99250 * 20 18 17 44 44 H 1.08004 * 119.84348 * 180.02562 * 25 24 23 45 45 H 1.08001 * 120.38102 * 179.97438 * 26 25 24 46 46 H 1.07999 * 120.48642 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0695 -4.8164 -0.1385 12 1 0.3514 -4.7866 0.6810 13 6 0.3300 -4.7084 -1.4807 14 6 -0.5548 -5.9427 -1.6698 15 6 0.3189 -7.1988 -1.7014 16 6 1.0595 -7.3345 -0.3672 17 7 1.7987 -6.0915 -0.1082 18 6 3.1197 -6.1210 0.1579 19 8 3.7371 -5.0842 0.2791 20 6 3.8295 -7.4423 0.3046 21 6 5.2878 -7.1993 0.5969 22 7 5.8137 -7.0733 1.8078 23 6 7.1224 -6.8683 1.7097 24 7 8.0799 -6.6843 2.6263 25 6 9.3295 -6.4981 2.2672 26 6 9.6818 -6.4897 0.9119 27 6 8.7171 -6.6756 -0.0253 28 7 7.4327 -6.8657 0.3788 29 7 6.2313 -7.0859 -0.3074 30 1 -0.4849 0.8401 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6090 -3.7583 0.9345 33 1 2.7563 -3.6732 -0.8373 34 1 1.0535 -4.6513 -2.2939 35 1 -0.2905 -3.8123 -1.4823 36 1 -1.1017 -5.8570 -2.6087 37 1 -1.2616 -6.0127 -0.8430 38 1 1.0425 -7.1182 -2.5125 39 1 -0.3091 -8.0754 -1.8597 40 1 1.7570 -8.1704 -0.4200 41 1 0.3405 -7.5058 0.4340 42 1 3.7345 -8.0104 -0.6208 43 1 3.3832 -8.0054 1.1242 44 1 10.0891 -6.3516 3.0209 45 1 10.7090 -6.3363 0.6154 46 1 8.9662 -6.6724 -1.0762 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501898522.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:39 Heat of formation + Delta-G solvation = 107.500097 kcal Electronic energy + Delta-G solvation = -30056.392151 eV Core-core repulsion = 25983.696722 eV Total energy + Delta-G solvation = -4072.695429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.99928 -41.64946 -39.87504 -38.44167 -36.68554 -35.65003 -34.38089 -33.76091 -33.15743 -31.82139 -31.51722 -30.34604 -27.75604 -25.94750 -25.55308 -25.02881 -24.75049 -23.15855 -22.34824 -21.63887 -20.17579 -19.48362 -19.20545 -19.11014 -18.19073 -17.49671 -17.29207 -16.96896 -16.58670 -16.46942 -15.59598 -15.50863 -15.36611 -15.27314 -15.01043 -14.92749 -14.54378 -14.26421 -14.16563 -14.10809 -13.76629 -13.72053 -13.50884 -13.18951 -13.10966 -13.06677 -12.87494 -12.69312 -12.25670 -12.12432 -12.02123 -11.82230 -11.57501 -11.40066 -11.38057 -11.03356 -11.02967 -10.76830 -10.25469 -9.91900 -9.61315 -8.99793 -8.00619 -5.28923 -0.51105 -0.34453 0.85753 1.27802 1.38508 1.43204 1.49952 1.55743 1.94555 2.25331 2.39461 2.51963 2.78979 3.31114 3.35032 3.47160 3.50369 3.84683 3.86819 3.92582 3.99206 4.11389 4.12825 4.15331 4.23340 4.27727 4.37496 4.43103 4.52816 4.63246 4.71710 4.82978 4.84890 4.95316 5.02004 5.06619 5.09314 5.14117 5.19274 5.26941 5.30097 5.36386 5.39303 5.50033 5.64861 6.21978 6.37373 6.40346 6.78553 7.14624 7.27884 8.01820 8.31051 9.22647 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.008413 B = 0.003413 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3327.463872 B = 8202.674676 C =10992.767108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.974 3.026 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.249 4.249 8 H 0.055 0.945 9 N -0.743 5.743 10 C 0.180 3.820 11 C 0.151 3.849 12 H 0.073 0.927 13 C -0.118 4.118 14 C -0.115 4.115 15 C -0.128 4.128 16 C 0.096 3.904 17 N -0.600 5.600 18 C 0.508 3.492 19 O -0.570 6.570 20 C -0.041 4.041 21 C 0.285 3.715 22 N -0.561 5.561 23 C 0.419 3.581 24 N -0.498 5.498 25 C 0.211 3.789 26 C -0.190 4.190 27 C 0.142 3.858 28 N -0.333 5.333 29 N -0.349 5.349 30 H 0.255 0.745 31 H 0.374 0.626 32 H 0.012 0.988 33 H 0.005 0.995 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.112 0.888 40 H 0.120 0.880 41 H 0.091 0.909 42 H 0.159 0.841 43 H 0.155 0.845 44 H 0.240 0.760 45 H 0.233 0.767 46 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.672 -25.630 -2.456 30.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.261 4.261 3 Si 0.802 3.198 4 H -0.206 1.206 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.381 4.381 8 H 0.073 0.927 9 N -0.389 5.389 10 C 0.054 3.946 11 C 0.047 3.953 12 H 0.091 0.909 13 C -0.156 4.156 14 C -0.153 4.153 15 C -0.166 4.166 16 C -0.025 4.025 17 N -0.334 5.334 18 C 0.295 3.705 19 O -0.448 6.448 20 C -0.082 4.082 21 C 0.003 3.997 22 N -0.295 5.295 23 C 0.058 3.942 24 N -0.215 5.215 25 C 0.028 3.972 26 C -0.213 4.213 27 C 0.007 3.993 28 N -0.112 5.112 29 N -0.181 5.181 30 H 0.063 0.937 31 H 0.207 0.793 32 H 0.030 0.970 33 H 0.023 0.977 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.131 0.869 40 H 0.138 0.862 41 H 0.109 0.891 42 H 0.176 0.824 43 H 0.173 0.827 44 H 0.256 0.744 45 H 0.250 0.750 46 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 15.231 -25.162 -2.026 29.482 hybrid contribution 0.370 1.661 -0.608 1.807 sum 15.601 -23.501 -2.634 28.331 Atomic orbital electron populations 1.69792 1.06253 1.26329 1.59114 1.25522 0.96572 1.00749 1.03270 0.85220 0.77398 0.79192 0.77992 1.20561 1.20742 1.20868 1.19413 0.90784 0.85795 1.42090 0.92716 1.42675 1.05498 1.01216 1.89470 1.21037 0.91764 0.84325 0.97468 1.21325 0.93075 0.82503 0.98391 0.90916 1.21880 0.98693 0.99757 0.95297 1.21542 0.97526 0.93226 1.02969 1.21929 0.99204 0.98692 0.96771 1.22275 0.97147 0.84460 0.98567 1.48170 1.07237 1.08425 1.69525 1.20780 0.82411 0.90974 0.76313 1.90868 1.66899 1.35713 1.51365 1.20253 0.83364 0.96058 1.08574 1.23973 0.97448 0.92955 0.85294 1.70542 1.03768 1.29847 1.25341 1.22930 0.92857 0.97402 0.80978 1.68097 1.01692 1.19069 1.32624 1.24654 0.90747 0.83642 0.98117 1.22679 1.03091 1.03816 0.91749 1.23153 0.78041 0.92879 1.05230 1.48844 1.08642 1.44949 1.08815 1.78316 0.89074 1.32835 1.17860 0.93652 0.79304 0.96990 0.97698 0.93552 0.92675 0.90676 0.90820 0.91999 0.86934 0.86166 0.89067 0.82378 0.82739 0.74441 0.75019 0.77033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.33 13.06 21.65 0.28 -62.04 16 2 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 3 Si 0.97 50.25 29.55 68.60 2.03 52.28 16 4 H -0.28 -13.97 7.11 99.48 0.71 -13.27 16 5 H -0.28 -14.04 7.11 99.48 0.71 -13.34 16 6 H -0.28 -14.28 7.11 99.48 0.71 -13.58 16 7 C -0.25 -16.02 9.99 84.03 0.84 -15.18 16 8 H 0.05 3.58 7.83 -2.91 -0.02 3.56 16 9 N -0.74 -43.80 5.29 -343.43 -1.82 -45.62 16 10 C 0.18 9.27 4.10 86.38 0.35 9.63 16 11 C 0.15 5.69 3.03 45.12 0.14 5.83 16 12 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 13 C -0.12 -3.99 5.17 30.82 0.16 -3.83 16 14 C -0.12 -2.53 5.88 30.62 0.18 -2.35 16 15 C -0.13 -1.97 6.08 30.67 0.19 -1.79 16 16 C 0.10 1.55 6.32 86.36 0.55 2.09 16 17 N -0.60 -17.53 2.97 -794.20 -2.36 -19.89 16 18 C 0.51 17.30 7.60 87.66 0.67 17.96 16 19 O -0.57 -26.92 11.44 -3.05 -0.03 -26.95 16 20 C -0.04 -0.98 4.73 29.10 0.14 -0.85 16 21 C 0.28 9.33 6.59 138.68 0.91 10.25 16 22 N -0.56 -20.72 11.25 -191.24 -2.15 -22.87 16 23 C 0.42 13.48 8.99 261.60 2.35 15.83 16 24 N -0.50 -12.67 10.48 -197.63 -2.07 -14.74 16 25 C 0.21 2.31 11.26 85.20 0.96 3.27 16 26 C -0.19 -1.12 10.06 22.14 0.22 -0.90 16 27 C 0.14 2.01 11.32 83.48 0.94 2.96 16 28 N -0.33 -9.16 3.91 -197.70 -0.77 -9.94 16 29 N -0.35 -11.19 12.78 -51.44 -0.66 -11.85 16 30 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 31 H 0.37 22.23 6.90 -92.71 -0.64 21.59 16 32 H 0.01 0.71 6.34 -2.39 -0.02 0.70 16 33 H 0.00 0.28 7.13 -2.39 -0.02 0.27 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 2.18 7.31 -2.39 -0.02 2.16 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.12 1.07 5.96 -2.39 -0.01 1.05 16 41 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.16 2.44 7.48 -2.39 -0.02 2.42 16 43 H 0.15 2.72 8.11 -2.39 -0.02 2.70 16 44 H 0.24 -0.05 8.06 -2.91 -0.02 -0.07 16 45 H 0.23 -1.39 8.06 -2.91 -0.02 -1.42 16 46 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -104.76 375.21 1.90 -102.86 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.38 Total: 19.69 kcal Atomic # 6 Polarization: 30.01 SS G_CDS: 9.07 Total: 39.07 kcal Atomic # 7 Polarization: -177.41 SS G_CDS: -9.54 Total: -186.95 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.03 Total: -26.95 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 2.03 Total: 52.28 kcal Total: -104.76 1.90 -102.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501898522.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.361 kcal (2) G-P(sol) polarization free energy of solvation -104.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds