Wall clock time and date at job start Wed Apr 1 2020 03:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47143 * 2 1 4 4 C 1.36734 * 127.13763 * 265.31635 * 3 2 1 5 5 C 1.50699 * 126.34937 * 359.97438 * 4 3 2 6 6 C 1.53005 * 109.47019 * 90.00077 * 5 4 3 7 7 C 1.50696 * 109.47237 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00194 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00081 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00129 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00099 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47245 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47140 * 120.00114 * 11 9 7 14 14 H 1.48497 * 109.47592 * 240.00048 * 11 9 7 15 15 N 1.30295 * 107.30540 * 180.02562 * 4 3 2 16 16 N 1.28533 * 110.05275 * 359.72555 * 15 4 3 17 17 C 1.31217 * 109.85866 * 0.45893 * 16 15 4 18 18 N 1.38570 * 126.47239 * 179.82240 * 17 16 15 19 19 C 1.46905 * 111.00238 * 57.55355 * 18 17 16 20 20 C 1.46898 * 110.99820 * 293.59856 * 18 17 16 21 21 H 1.08994 * 109.47548 * 309.99861 * 20 18 17 22 22 C 1.53001 * 109.47260 * 70.00245 * 20 18 17 23 23 C 1.53006 * 109.46966 * 190.00077 * 20 18 17 24 24 S 1.81396 * 109.47251 * 65.00228 * 23 20 18 25 25 C 1.81398 * 101.92081 * 179.97438 * 24 23 20 26 26 O 1.42103 * 108.57588 * 294.48613 * 24 23 20 27 27 O 1.42105 * 108.57858 * 65.50911 * 24 23 20 28 28 H 1.09004 * 109.47219 * 55.03402 * 1 2 3 29 29 H 1.08994 * 109.47234 * 175.03906 * 1 2 3 30 30 H 1.09002 * 109.46711 * 295.03834 * 1 2 3 31 31 H 1.09005 * 109.46964 * 240.00232 * 2 1 3 32 32 H 1.08993 * 109.47339 * 120.00448 * 2 1 3 33 33 H 1.09004 * 109.47597 * 209.99755 * 5 4 3 34 34 H 1.08997 * 109.47342 * 330.00439 * 5 4 3 35 35 H 1.09003 * 109.47122 * 299.99960 * 6 5 4 36 36 H 1.08995 * 109.47494 * 59.99919 * 6 5 4 37 37 H 0.96999 * 120.00406 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.46987 * 300.87861 * 19 18 17 39 39 H 1.09001 * 109.46745 * 60.88012 * 19 18 17 40 40 H 1.08999 * 109.47048 * 180.87524 * 19 18 17 41 41 H 1.09009 * 109.47069 * 59.99867 * 22 20 18 42 42 H 1.09000 * 109.47367 * 300.00234 * 22 20 18 43 43 H 1.08995 * 109.47629 * 179.97438 * 22 20 18 44 44 H 1.09004 * 109.46968 * 185.00575 * 23 20 18 45 45 H 1.09003 * 109.47185 * 304.99983 * 23 20 18 46 46 H 1.08998 * 109.47043 * 60.00366 * 25 24 23 47 47 H 1.09003 * 109.47075 * 179.97438 * 25 24 23 48 48 H 1.08999 * 109.47157 * 299.99914 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3775 2.1299 -1.0864 5 6 2.3464 1.6865 -2.5264 6 6 0.9803 2.0153 -3.1318 7 6 0.9489 1.5714 -4.5716 8 1 1.8168 1.1021 -5.0111 9 6 -0.1876 1.7643 -5.3279 10 7 -1.2442 2.3361 -4.7931 11 14 -0.2261 1.2147 -7.1128 12 1 1.0794 0.6045 -7.4712 13 1 -1.3076 0.2142 -7.2995 14 1 -0.4812 2.3879 -7.9867 15 7 2.7525 3.2973 -0.6458 16 7 2.6501 3.3388 0.6348 17 6 2.2098 2.1873 1.0843 18 7 1.9773 1.8547 2.4092 19 6 1.0155 2.7798 3.0233 20 6 3.2329 1.8185 3.1710 21 1 3.9639 1.2107 2.6380 22 6 3.7728 3.2410 3.3322 23 6 2.9745 1.2115 4.5515 24 16 2.4757 -0.5226 4.3659 25 6 2.2280 -1.0279 6.0904 26 8 1.2226 -0.5641 3.6970 27 8 3.5712 -1.2543 3.8330 28 1 -0.3634 0.5890 -0.8422 29 1 -0.3633 -1.0238 -0.0889 30 1 -0.3633 0.4349 0.9311 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.1255 2.2068 -3.0837 34 1 2.5180 0.6115 -2.5793 35 1 0.2012 1.4950 -2.5746 36 1 0.8085 3.0903 -3.0789 37 1 -2.0437 2.4722 -5.3252 38 1 1.4034 3.7969 2.9679 39 1 0.0662 2.7234 2.4905 40 1 0.8630 2.5053 4.0671 41 1 3.0417 3.8488 3.8654 42 1 3.9568 3.6735 2.3488 43 1 4.7041 3.2142 3.8978 44 1 3.8849 1.2659 5.1485 45 1 2.1797 1.7669 5.0496 46 1 1.4554 -0.4069 6.5436 47 1 1.9188 -2.0727 6.1220 48 1 3.1606 -0.9078 6.6417 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520981213.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:55 Heat of formation + Delta-G solvation = 18.900708 kcal Electronic energy + Delta-G solvation = -29813.955263 eV Core-core repulsion = 25840.569076 eV Total energy + Delta-G solvation = -3973.386186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.61359 -38.76398 -37.15196 -36.15594 -35.38648 -34.01265 -32.58276 -31.48352 -30.13607 -30.02163 -28.69290 -27.88980 -26.44992 -25.20012 -23.71612 -21.98226 -21.79219 -20.00391 -19.66139 -19.06754 -17.47445 -17.04375 -16.57171 -16.54392 -16.14344 -15.92280 -15.79173 -14.83834 -14.45191 -14.37620 -14.02415 -13.81679 -13.69536 -13.59910 -13.33934 -13.16496 -13.02004 -12.73109 -12.59319 -12.29825 -12.21190 -12.20435 -12.13818 -11.99108 -11.78574 -11.42497 -11.27544 -11.24330 -11.09380 -10.95520 -10.93723 -10.69671 -10.62375 -10.23230 -9.94018 -9.79519 -9.66478 -9.17230 -8.83858 -8.39206 -8.36998 -6.02633 -4.06259 -0.32655 2.10695 2.46757 2.52698 3.26165 3.31016 3.34946 3.38885 3.42619 3.57264 3.78883 4.10710 4.28478 4.37415 4.43867 4.61806 4.80628 4.91075 4.97071 5.01144 5.06610 5.12109 5.20271 5.33074 5.33942 5.34661 5.45662 5.49263 5.58895 5.64132 5.75768 5.86310 5.98806 6.02554 6.17358 6.37348 6.45144 6.47650 6.51915 6.54708 6.72708 6.97883 7.49344 7.61950 7.72871 7.95338 8.32884 8.99924 9.18108 9.58125 11.08473 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.019056 B = 0.002853 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.012663 B = 9812.957232 C =10501.064419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.110 3.890 3 N -0.458 5.458 4 C 0.219 3.781 5 C -0.033 4.033 6 C 0.031 3.969 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.059 3.941 10 N -0.892 5.892 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.284 1.284 15 N -0.300 5.300 16 N -0.309 5.309 17 C 0.317 3.683 18 N -0.458 5.458 19 C 0.031 3.969 20 C 0.102 3.898 21 H 0.097 0.903 22 C -0.182 4.182 23 C -0.609 4.609 24 S 2.422 3.578 25 C -0.666 4.666 26 O -0.907 6.907 27 O -0.941 6.941 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.018 0.982 36 H 0.024 0.976 37 H 0.261 0.739 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.127 0.873 47 H 0.128 0.872 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.022 -5.831 25.967 27.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.012 4.012 3 N -0.150 5.150 4 C -0.048 4.048 5 C -0.073 4.073 6 C -0.007 4.007 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.143 4.143 10 N -0.530 5.530 11 Si 0.721 3.279 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.210 1.210 15 N -0.140 5.140 16 N -0.153 5.153 17 C -0.039 4.039 18 N -0.183 5.183 19 C -0.116 4.116 20 C -0.007 4.007 21 H 0.115 0.885 22 C -0.241 4.241 23 C -0.737 4.737 24 S 2.602 3.398 25 C -0.814 4.814 26 O -0.904 6.904 27 O -0.938 6.938 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.036 0.964 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.081 0.919 44 H 0.157 0.843 45 H 0.156 0.844 46 H 0.145 0.855 47 H 0.146 0.854 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.015 -5.375 25.201 26.705 hybrid contribution -0.322 -0.440 0.080 0.551 sum 6.693 -5.815 25.280 26.790 Atomic orbital electron populations 1.22121 0.93292 1.03354 1.03628 1.21842 0.96683 0.78455 1.04247 1.46451 1.48514 1.13948 1.06095 1.25628 0.98153 0.88517 0.92541 1.20474 1.03790 1.00369 0.82644 1.19104 0.88486 0.97866 0.95220 1.21175 0.99289 1.39740 0.95840 0.92275 1.25002 0.95633 0.95134 0.98489 1.69979 1.03550 1.42999 1.36518 0.86514 0.78034 0.78357 0.84957 1.19640 1.21054 1.20976 1.74046 1.20880 1.16920 1.02141 1.74408 1.18676 1.17699 1.04556 1.21893 1.05904 0.88613 0.87509 1.58797 1.11119 1.51860 0.96566 1.22473 0.95302 0.94460 0.99331 1.21337 0.90623 0.98879 0.89836 0.88513 1.22531 1.01215 0.95300 1.05090 1.30501 1.12930 1.25120 1.05175 1.07966 0.76237 0.77893 0.77701 1.30398 1.11460 1.12914 1.26604 1.93644 1.41896 1.85265 1.69626 1.93605 1.55108 1.69134 1.75998 0.90848 0.90719 0.91604 0.88657 0.88906 0.89302 0.91136 0.96366 0.95723 0.92964 0.92755 0.90429 0.90600 0.91631 0.88946 0.91936 0.84278 0.84442 0.85466 0.85357 0.85707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 10.24 37.16 0.38 -2.18 16 2 C 0.11 1.69 6.78 -4.04 -0.03 1.66 16 3 N -0.46 -8.15 2.81 -114.09 -0.32 -8.47 16 4 C 0.22 4.44 7.32 -154.02 -1.13 3.31 16 5 C -0.03 -0.68 5.52 -27.88 -0.15 -0.84 16 6 C 0.03 0.80 4.96 -27.88 -0.14 0.66 16 7 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 11 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 15 N -0.30 -6.46 12.18 32.99 0.40 -6.06 16 16 N -0.31 -5.92 9.92 30.31 0.30 -5.62 16 17 C 0.32 5.36 6.27 -318.89 -2.00 3.36 16 18 N -0.46 -5.93 3.69 -174.76 -0.65 -6.57 16 19 C 0.03 0.35 8.60 60.07 0.52 0.87 16 20 C 0.10 1.05 2.28 -67.71 -0.15 0.90 16 21 H 0.10 1.10 8.05 -51.93 -0.42 0.68 16 22 C -0.18 -1.81 8.38 37.16 0.31 -1.50 16 23 C -0.61 -3.44 5.19 37.16 0.19 -3.25 16 24 S 2.42 17.99 5.28 -107.50 -0.57 17.42 16 25 C -0.67 -2.26 10.62 101.05 1.07 -1.19 16 26 O -0.91 -9.93 17.19 -57.83 -0.99 -10.92 16 27 O -0.94 -10.71 18.10 -57.83 -1.05 -11.76 16 28 H 0.07 1.34 6.77 -51.93 -0.35 0.99 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.10 1.36 7.12 -51.93 -0.37 0.99 16 32 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 34 H 0.07 1.32 7.19 -51.93 -0.37 0.95 16 35 H 0.02 0.48 6.77 -51.93 -0.35 0.13 16 36 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.05 0.62 6.41 -51.93 -0.33 0.29 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 0.56 6.17 -51.93 -0.32 0.24 16 41 H 0.06 0.57 6.44 -51.92 -0.33 0.24 16 42 H 0.09 1.23 5.99 -51.93 -0.31 0.92 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.14 0.35 8.14 -51.92 -0.42 -0.07 16 45 H 0.14 0.45 6.25 -51.92 -0.32 0.12 16 46 H 0.13 0.20 8.14 -51.93 -0.42 -0.23 16 47 H 0.13 0.43 8.14 -51.92 -0.42 0.01 16 48 H 0.12 0.19 8.14 -51.92 -0.42 -0.23 16 LS Contribution 396.80 15.07 5.98 5.98 Total: -1.00 -37.50 396.80 -10.39 -47.89 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.68 Total: -1.14 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -1.54 Total: -11.28 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.47 Total: -52.54 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -2.04 Total: -22.68 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 17.99 SS G_CDS: -0.57 Total: 17.42 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.50 -10.39 -47.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520981213.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.788 kcal (2) G-P(sol) polarization free energy of solvation -37.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds