Wall clock time and date at job start Wed Apr 1 2020 04:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 120.00093 * 2 1 4 4 H 1.48498 * 109.46886 * 270.00204 * 3 2 1 5 5 H 1.48500 * 109.46919 * 29.99730 * 3 2 1 6 6 H 1.48495 * 109.47309 * 150.00089 * 3 2 1 7 7 C 1.38812 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00192 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99734 * 0.02562 * 7 2 1 10 10 C 1.47422 * 125.64901 * 359.97104 * 9 7 2 11 11 C 1.54913 * 104.83064 * 155.90874 * 10 9 7 12 12 C 1.55153 * 101.58310 * 37.00547 * 11 10 9 13 13 H 1.09009 * 110.71795 * 83.04090 * 12 11 10 14 14 C 1.52996 * 110.72280 * 206.13187 * 12 11 10 15 15 C 1.53005 * 109.47571 * 182.56018 * 14 12 11 16 16 N 1.46496 * 109.47059 * 180.02562 * 15 14 12 17 17 C 1.34774 * 119.99544 * 180.02562 * 16 15 14 18 18 O 1.21279 * 120.00472 * 0.02562 * 17 16 15 19 19 C 1.50706 * 120.00020 * 180.02562 * 17 16 15 20 20 C 1.50698 * 109.47294 * 180.02562 * 19 17 16 21 21 N 1.32604 * 125.18953 * 90.01976 * 20 19 17 22 22 C 1.32826 * 109.75971 * 179.97438 * 21 20 19 23 23 N 1.33824 * 132.50461 * 180.02562 * 22 21 20 24 24 C 1.31358 * 120.86250 * 179.97438 * 23 22 21 25 25 C 1.40042 * 120.31344 * 359.97073 * 24 23 22 26 26 C 1.35781 * 119.23712 * 0.02562 * 25 24 23 27 27 N 1.35974 * 119.02207 * 359.97438 * 26 25 24 28 28 N 1.31183 * 125.18341 * 269.71605 * 20 19 17 29 29 C 1.47321 * 125.61475 * 180.19532 * 9 7 2 30 30 H 0.96996 * 120.00614 * 359.97438 * 1 2 3 31 31 H 1.08993 * 110.36912 * 37.07107 * 10 9 7 32 32 H 1.08999 * 110.46113 * 274.78867 * 10 9 7 33 33 H 1.09003 * 111.00062 * 278.93410 * 11 10 9 34 34 H 1.08995 * 111.03535 * 155.09721 * 11 10 9 35 35 H 1.09004 * 109.46785 * 62.56304 * 14 12 11 36 36 H 1.09001 * 109.47364 * 302.56805 * 14 12 11 37 37 H 1.08996 * 109.46524 * 60.00315 * 15 14 12 38 38 H 1.08992 * 109.46876 * 300.00648 * 15 14 12 39 39 H 0.96994 * 120.00700 * 0.02562 * 16 15 14 40 40 H 1.09001 * 109.46953 * 299.99667 * 19 17 16 41 41 H 1.09000 * 109.47318 * 59.99264 * 19 17 16 42 42 H 1.07998 * 119.83861 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.37837 * 179.97438 * 25 24 23 44 44 H 1.08006 * 120.48596 * 180.02562 * 26 25 24 45 45 H 1.09001 * 110.06384 * 61.67793 * 29 9 7 46 46 H 1.09006 * 109.84731 * 300.41910 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1415 -2.5331 0.0006 11 6 -0.4016 -3.9326 -0.6107 12 6 0.7785 -4.7524 -0.0254 13 1 0.5447 -5.1003 0.9809 14 6 1.1232 -5.9317 -0.9371 15 6 2.2454 -6.7559 -0.3028 16 7 2.5758 -7.8847 -1.1761 17 6 3.5424 -8.7530 -0.8183 18 8 4.1384 -8.6003 0.2269 19 6 3.8828 -9.9140 -1.7169 20 6 4.9872 -10.7265 -1.0915 21 7 4.8101 -11.7488 -0.2657 22 6 5.9888 -12.2404 0.0995 23 7 6.3367 -13.2524 0.9031 24 6 7.6004 -13.5470 1.1072 25 6 8.6094 -12.8029 0.4831 26 6 8.2659 -11.7743 -0.3341 27 7 6.9489 -11.4948 -0.5247 28 7 6.2702 -10.5338 -1.2854 29 6 1.9338 -3.7298 0.0052 30 1 -0.4851 0.8400 0.0004 31 1 -0.5993 -1.7591 -0.6153 32 1 -0.5291 -2.4858 1.0183 33 1 -0.3520 -3.8988 -1.6991 34 1 -1.3589 -4.3333 -0.2776 35 1 1.4510 -5.5574 -1.9070 36 1 0.2416 -6.5590 -1.0689 37 1 1.9176 -7.1301 0.6670 38 1 3.1269 -6.1286 -0.1711 39 1 2.0990 -8.0071 -2.0119 40 1 3.0013 -10.5412 -1.8498 41 1 4.2113 -9.5390 -2.6863 42 1 7.8625 -14.3669 1.7594 43 1 9.6487 -13.0439 0.6505 44 1 9.0275 -11.1874 -0.8260 45 1 2.5275 -3.8681 0.9087 46 1 2.5623 -3.8543 -0.8767 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567714846.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:24 Heat of formation + Delta-G solvation = 125.882181 kcal Electronic energy + Delta-G solvation = -28203.383103 eV Core-core repulsion = 24131.484781 eV Total energy + Delta-G solvation = -4071.898322 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.32125 -39.99745 -39.07863 -37.77115 -35.26271 -35.00232 -33.15988 -32.76175 -31.15817 -30.96287 -29.78529 -28.81866 -26.50545 -25.21450 -24.69816 -24.18199 -22.53546 -21.76003 -20.59727 -20.06400 -19.28266 -18.87234 -18.55202 -17.51400 -16.91701 -16.76647 -16.65151 -15.93442 -15.83639 -15.20211 -14.99131 -14.59315 -14.07129 -13.99563 -13.91054 -13.69184 -13.57347 -13.10014 -13.07627 -12.54187 -12.49979 -12.41523 -12.23771 -11.84919 -11.66866 -11.55296 -11.04412 -10.88630 -10.72887 -10.56363 -10.47684 -10.31879 -10.13039 -10.05351 -9.94250 -9.81304 -9.70890 -9.42785 -9.24584 -9.13468 -8.60869 -6.77869 -5.61008 -3.02159 -0.07113 0.24825 1.43032 2.02408 2.47243 2.73555 2.94398 3.16041 3.42301 3.46513 3.47234 3.49479 3.76907 3.99790 4.29408 4.48461 4.52684 4.58585 4.76780 4.91043 4.93727 4.97900 5.13246 5.30397 5.32218 5.51733 5.62690 5.65660 5.66595 5.75145 5.80018 5.83047 5.91947 6.04987 6.19677 6.25572 6.38852 6.42400 6.64425 6.67849 6.81162 6.95340 7.02020 7.33582 7.51071 7.57313 7.67483 7.90256 8.06221 8.41183 9.27071 9.87945 10.53659 11.42909 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.020338 B = 0.001642 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.402871 B =17052.211029 C =17950.249899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.220 4.220 8 H 0.076 0.924 9 N -0.606 5.606 10 C 0.151 3.849 11 C -0.138 4.138 12 C -0.098 4.098 13 H 0.072 0.928 14 C -0.116 4.116 15 C 0.118 3.882 16 N -0.725 5.725 17 C 0.520 3.480 18 O -0.530 6.530 19 C -0.054 4.054 20 C 0.300 3.700 21 N -0.512 5.512 22 C 0.442 3.558 23 N -0.454 5.454 24 C 0.205 3.795 25 C -0.226 4.226 26 C 0.174 3.826 27 N -0.325 5.325 28 N -0.320 5.320 29 C 0.139 3.861 30 H 0.251 0.749 31 H 0.105 0.895 32 H 0.010 0.990 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.402 0.598 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.191 0.809 43 H 0.176 0.824 44 H 0.183 0.817 45 H 0.019 0.981 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.739 -29.799 -4.639 33.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.744 3.256 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.026 3.974 11 C -0.177 4.177 12 C -0.118 4.118 13 H 0.090 0.910 14 C -0.154 4.154 15 C -0.005 4.005 16 N -0.377 5.377 17 C 0.303 3.697 18 O -0.405 6.405 19 C -0.096 4.096 20 C 0.018 3.982 21 N -0.243 5.243 22 C 0.082 3.918 23 N -0.168 5.168 24 C 0.019 3.981 25 C -0.251 4.251 26 C 0.037 3.963 27 N -0.105 5.105 28 N -0.151 5.151 29 C 0.013 3.987 30 H 0.062 0.938 31 H 0.123 0.877 32 H 0.028 0.972 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.236 0.764 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.208 0.792 43 H 0.193 0.807 44 H 0.201 0.799 45 H 0.037 0.963 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 13.113 -29.285 -3.959 32.330 hybrid contribution 1.183 1.076 -0.478 1.670 sum 14.296 -28.209 -4.438 31.935 Atomic orbital electron populations 1.69800 1.04857 1.24652 1.57905 1.24782 0.95738 0.97677 1.02672 0.86077 0.78538 0.83412 0.77527 1.21650 1.21671 1.20782 1.19099 0.90511 0.82584 1.42667 0.90580 1.44595 1.01984 0.99784 1.86796 1.21913 0.84659 0.92667 0.98128 1.23035 0.95853 0.98842 0.99950 1.22097 0.97523 0.93786 0.98359 0.90974 1.21792 0.97142 0.96689 0.99768 1.21533 0.98991 0.86500 0.93474 1.45951 1.38389 1.28204 1.25138 1.20005 0.80055 0.82969 0.86628 1.90772 1.51101 1.74126 1.24548 1.20053 0.95680 0.94678 0.99184 1.23481 0.91449 0.91359 0.91904 1.70667 1.20294 1.14114 1.19248 1.22717 0.85409 0.90714 0.92965 1.68022 1.20528 1.13221 1.15026 1.23612 0.86082 0.95881 0.92520 1.21974 1.03489 0.98006 1.01614 1.22201 0.83538 0.95637 0.94975 1.48757 1.07657 1.22983 1.31053 1.78546 1.06004 1.10716 1.19880 1.21424 0.93684 0.85915 0.97667 0.93813 0.87699 0.97181 0.92194 0.92482 0.91104 0.91516 0.91381 0.90916 0.76414 0.85224 0.85630 0.79194 0.80714 0.79943 0.96262 0.95908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.37 10.09 55.49 0.56 -26.81 16 2 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.22 -6.31 10.28 -15.06 -0.15 -6.47 16 8 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 9 N -0.61 -15.94 3.40 -169.83 -0.58 -16.52 16 10 C 0.15 3.73 5.89 -2.53 -0.01 3.72 16 11 C -0.14 -2.58 6.54 -24.58 -0.16 -2.74 16 12 C -0.10 -1.67 2.95 -88.79 -0.26 -1.93 16 13 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 14 C -0.12 -1.47 4.72 -26.73 -0.13 -1.60 16 15 C 0.12 1.54 5.54 -4.04 -0.02 1.51 16 16 N -0.72 -7.61 5.56 -60.30 -0.33 -7.94 16 17 C 0.52 6.59 7.82 -10.98 -0.09 6.51 16 18 O -0.53 -9.48 16.03 5.56 0.09 -9.39 16 19 C -0.05 -0.50 6.33 -29.03 -0.18 -0.68 16 20 C 0.30 3.95 6.59 -157.02 -1.03 2.92 16 21 N -0.51 -7.57 11.25 -11.80 -0.13 -7.71 16 22 C 0.44 5.77 8.99 -323.14 -2.91 2.86 16 23 N -0.45 -4.71 10.48 -13.82 -0.14 -4.85 16 24 C 0.21 0.95 11.27 -17.08 -0.19 0.76 16 25 C -0.23 -0.63 10.07 -39.79 -0.40 -1.03 16 26 C 0.17 1.01 11.32 -16.60 -0.19 0.82 16 27 N -0.33 -3.65 3.91 -13.84 -0.05 -3.71 16 28 N -0.32 -4.22 12.78 32.39 0.41 -3.81 16 29 C 0.14 2.96 6.13 -2.90 -0.02 2.94 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.11 2.90 5.87 -51.93 -0.31 2.60 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.90 8.00 -51.93 -0.42 0.48 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.10 7.58 -51.93 -0.39 0.71 16 39 H 0.40 2.75 8.47 -40.82 -0.35 2.40 16 40 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.19 0.01 8.06 -52.49 -0.42 -0.41 16 43 H 0.18 -0.29 8.06 -52.49 -0.42 -0.71 16 44 H 0.18 0.45 8.06 -52.48 -0.42 0.03 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.02 0.48 7.73 -51.93 -0.40 0.08 16 LS Contribution 385.43 15.07 5.81 5.81 Total: -1.00 -41.31 385.43 -11.72 -53.03 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -6.48 Total: -2.72 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: -5.84 Total: 7.12 kcal Atomic # 7 Polarization: -71.08 SS G_CDS: -0.27 Total: -71.35 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -41.31 -11.72 -53.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567714846.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.910 kcal (2) G-P(sol) polarization free energy of solvation -41.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds