Wall clock time and date at job start Wed Apr 1 2020 04:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 120.00093 * 2 1 4 4 H 1.48498 * 109.46886 * 270.00204 * 3 2 1 5 5 H 1.48500 * 109.46919 * 29.99730 * 3 2 1 6 6 H 1.48495 * 109.47309 * 150.00089 * 3 2 1 7 7 C 1.38812 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00192 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99734 * 0.02562 * 7 2 1 10 10 C 1.47422 * 125.64901 * 359.97104 * 9 7 2 11 11 C 1.54913 * 104.83064 * 155.90874 * 10 9 7 12 12 C 1.55153 * 101.58310 * 37.00547 * 11 10 9 13 13 H 1.09009 * 110.71795 * 83.04090 * 12 11 10 14 14 C 1.52996 * 110.72280 * 206.13187 * 12 11 10 15 15 C 1.53005 * 109.47571 * 182.56018 * 14 12 11 16 16 N 1.46496 * 109.47059 * 180.02562 * 15 14 12 17 17 C 1.34774 * 119.99544 * 180.02562 * 16 15 14 18 18 O 1.21279 * 120.00472 * 0.02562 * 17 16 15 19 19 C 1.50706 * 120.00020 * 180.02562 * 17 16 15 20 20 C 1.50698 * 109.47294 * 180.02562 * 19 17 16 21 21 N 1.32604 * 125.18953 * 90.01976 * 20 19 17 22 22 C 1.32826 * 109.75971 * 179.97438 * 21 20 19 23 23 N 1.33824 * 132.50461 * 180.02562 * 22 21 20 24 24 C 1.31358 * 120.86250 * 179.97438 * 23 22 21 25 25 C 1.40042 * 120.31344 * 359.97073 * 24 23 22 26 26 C 1.35781 * 119.23712 * 0.02562 * 25 24 23 27 27 N 1.35974 * 119.02207 * 359.97438 * 26 25 24 28 28 N 1.31183 * 125.18341 * 269.71605 * 20 19 17 29 29 C 1.47321 * 125.61475 * 180.19532 * 9 7 2 30 30 H 0.96996 * 120.00614 * 359.97438 * 1 2 3 31 31 H 1.08993 * 110.36912 * 37.07107 * 10 9 7 32 32 H 1.08999 * 110.46113 * 274.78867 * 10 9 7 33 33 H 1.09003 * 111.00062 * 278.93410 * 11 10 9 34 34 H 1.08995 * 111.03535 * 155.09721 * 11 10 9 35 35 H 1.09004 * 109.46785 * 62.56304 * 14 12 11 36 36 H 1.09001 * 109.47364 * 302.56805 * 14 12 11 37 37 H 1.08996 * 109.46524 * 60.00315 * 15 14 12 38 38 H 1.08992 * 109.46876 * 300.00648 * 15 14 12 39 39 H 0.96994 * 120.00700 * 0.02562 * 16 15 14 40 40 H 1.09001 * 109.46953 * 299.99667 * 19 17 16 41 41 H 1.09000 * 109.47318 * 59.99264 * 19 17 16 42 42 H 1.07998 * 119.83861 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.37837 * 179.97438 * 25 24 23 44 44 H 1.08006 * 120.48596 * 180.02562 * 26 25 24 45 45 H 1.09001 * 110.06384 * 61.67793 * 29 9 7 46 46 H 1.09006 * 109.84731 * 300.41910 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1415 -2.5331 0.0006 11 6 -0.4016 -3.9326 -0.6107 12 6 0.7785 -4.7524 -0.0254 13 1 0.5447 -5.1003 0.9809 14 6 1.1232 -5.9317 -0.9371 15 6 2.2454 -6.7559 -0.3028 16 7 2.5758 -7.8847 -1.1761 17 6 3.5424 -8.7530 -0.8183 18 8 4.1384 -8.6003 0.2269 19 6 3.8828 -9.9140 -1.7169 20 6 4.9872 -10.7265 -1.0915 21 7 4.8101 -11.7488 -0.2657 22 6 5.9888 -12.2404 0.0995 23 7 6.3367 -13.2524 0.9031 24 6 7.6004 -13.5470 1.1072 25 6 8.6094 -12.8029 0.4831 26 6 8.2659 -11.7743 -0.3341 27 7 6.9489 -11.4948 -0.5247 28 7 6.2702 -10.5338 -1.2854 29 6 1.9338 -3.7298 0.0052 30 1 -0.4851 0.8400 0.0004 31 1 -0.5993 -1.7591 -0.6153 32 1 -0.5291 -2.4858 1.0183 33 1 -0.3520 -3.8988 -1.6991 34 1 -1.3589 -4.3333 -0.2776 35 1 1.4510 -5.5574 -1.9070 36 1 0.2416 -6.5590 -1.0689 37 1 1.9176 -7.1301 0.6670 38 1 3.1269 -6.1286 -0.1711 39 1 2.0990 -8.0071 -2.0119 40 1 3.0013 -10.5412 -1.8498 41 1 4.2113 -9.5390 -2.6863 42 1 7.8625 -14.3669 1.7594 43 1 9.6487 -13.0439 0.6505 44 1 9.0275 -11.1874 -0.8260 45 1 2.5275 -3.8681 0.9087 46 1 2.5623 -3.8543 -0.8767 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567714846.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:23 Heat of formation + Delta-G solvation = 96.567304 kcal Electronic energy + Delta-G solvation = -28204.654291 eV Core-core repulsion = 24131.484781 eV Total energy + Delta-G solvation = -4073.169510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.00670 -40.93259 -39.77932 -39.35078 -36.50676 -35.64732 -34.79256 -33.59961 -32.48202 -31.82376 -30.97937 -30.22258 -28.05185 -26.55393 -25.68254 -24.89727 -23.77472 -22.70896 -21.90860 -21.55029 -20.67079 -19.49778 -19.16190 -18.89602 -18.38697 -17.45878 -17.32952 -17.08074 -16.82574 -16.64177 -16.32760 -15.60294 -15.50620 -15.05410 -14.89366 -14.71815 -14.27503 -14.21605 -13.82746 -13.78172 -13.73298 -13.55411 -13.34937 -13.25420 -13.09847 -13.03029 -12.80942 -12.70145 -12.22257 -12.01998 -11.78593 -11.58815 -11.43766 -11.38772 -11.27824 -11.09897 -11.03448 -10.75067 -10.65185 -10.14667 -9.92588 -8.88482 -7.78207 -5.22543 -0.51813 -0.34891 0.85102 1.29110 1.44021 1.46309 1.53018 1.55069 2.07828 2.31858 2.40829 2.48389 2.80189 3.30368 3.35749 3.49413 3.72068 3.75638 3.81646 3.94974 3.96097 4.14523 4.18576 4.28830 4.33375 4.36103 4.41302 4.54020 4.64070 4.71805 4.74455 4.84769 4.88911 5.00729 5.03878 5.08197 5.13016 5.19292 5.27206 5.35927 5.40476 5.43076 5.51622 5.69503 5.83362 6.31902 6.36745 6.50093 6.77385 7.11017 7.19318 7.78692 8.42786 9.23344 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.020338 B = 0.001642 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.402871 B =17052.211029 C =17950.249899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.069 4.069 3 Si 0.981 3.019 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.242 4.242 8 H 0.075 0.925 9 N -0.629 5.629 10 C 0.149 3.851 11 C -0.120 4.120 12 C -0.086 4.086 13 H 0.075 0.925 14 C -0.098 4.098 15 C 0.124 3.876 16 N -0.706 5.706 17 C 0.518 3.482 18 O -0.590 6.590 19 C -0.046 4.046 20 C 0.283 3.717 21 N -0.560 5.560 22 C 0.419 3.581 23 N -0.498 5.498 24 C 0.213 3.787 25 C -0.189 4.189 26 C 0.143 3.857 27 N -0.334 5.334 28 N -0.351 5.351 29 C 0.133 3.867 30 H 0.247 0.753 31 H 0.072 0.928 32 H -0.019 1.019 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.423 0.577 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.240 0.760 43 H 0.232 0.768 44 H 0.212 0.788 45 H 0.008 0.992 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.493 -32.180 -5.612 36.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.261 4.261 3 Si 0.809 3.191 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.199 1.199 7 C -0.371 4.371 8 H 0.093 0.907 9 N -0.355 5.355 10 C 0.024 3.976 11 C -0.159 4.159 12 C -0.105 4.105 13 H 0.094 0.906 14 C -0.136 4.136 15 C 0.000 4.000 16 N -0.359 5.359 17 C 0.304 3.696 18 O -0.470 6.470 19 C -0.087 4.087 20 C 0.001 3.999 21 N -0.294 5.294 22 C 0.059 3.941 23 N -0.214 5.214 24 C 0.030 3.970 25 C -0.213 4.213 26 C 0.007 3.993 27 N -0.113 5.113 28 N -0.183 5.183 29 C 0.008 3.992 30 H 0.057 0.943 31 H 0.090 0.910 32 H -0.001 1.001 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.262 0.738 40 H 0.176 0.824 41 H 0.176 0.824 42 H 0.256 0.744 43 H 0.249 0.751 44 H 0.229 0.771 45 H 0.026 0.974 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 14.902 -31.716 -4.970 35.393 hybrid contribution 0.850 1.690 -0.050 1.893 sum 15.752 -30.026 -5.020 34.276 Atomic orbital electron populations 1.70058 1.06117 1.25002 1.58579 1.25643 0.96722 1.00961 1.02765 0.85045 0.77434 0.79012 0.77638 1.20882 1.21808 1.19915 1.19452 0.90898 0.84115 1.42625 0.90669 1.44943 1.02948 1.00934 1.86706 1.21766 0.83842 0.95698 0.96329 1.22872 0.97824 0.94965 1.00206 1.22019 0.94806 0.93979 0.99730 0.90621 1.21634 0.98264 0.95127 0.98605 1.21283 0.98037 0.86911 0.93769 1.45720 1.37848 1.26838 1.25497 1.20593 0.79333 0.83524 0.86136 1.90744 1.53279 1.75668 1.27286 1.20207 0.96080 0.93316 0.99122 1.24021 0.92244 0.91552 0.92075 1.70543 1.22262 1.15631 1.20950 1.22949 0.85741 0.91653 0.93802 1.68120 1.23553 1.13558 1.16197 1.24657 0.84731 0.96158 0.91467 1.22684 1.05596 0.95028 0.98003 1.23147 0.82249 0.97396 0.96476 1.48844 1.09118 1.22476 1.30850 1.78346 1.06360 1.12210 1.21416 1.21623 0.95307 0.85097 0.97141 0.94303 0.90984 1.00071 0.91122 0.89546 0.90272 0.88021 0.92397 0.93576 0.73836 0.82378 0.82397 0.74442 0.75120 0.77108 0.97443 0.95402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.88 10.09 21.65 0.22 -57.66 16 2 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 3 Si 0.98 47.09 29.55 68.60 2.03 49.11 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.24 -14.21 10.28 84.03 0.86 -13.34 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 9 N -0.63 -33.91 3.40 -691.24 -2.35 -36.26 16 10 C 0.15 7.51 5.89 86.86 0.51 8.02 16 11 C -0.12 -4.29 6.54 31.99 0.21 -4.08 16 12 C -0.09 -2.80 2.95 -9.61 -0.03 -2.82 16 13 H 0.08 2.43 8.14 -2.38 -0.02 2.42 16 14 C -0.10 -2.22 4.72 30.59 0.14 -2.08 16 15 C 0.12 3.10 5.54 86.38 0.48 3.58 16 16 N -0.71 -13.67 5.56 -463.07 -2.57 -16.24 16 17 C 0.52 13.06 7.82 87.66 0.69 13.75 16 18 O -0.59 -22.00 16.03 -3.02 -0.05 -22.05 16 19 C -0.05 -0.82 6.33 29.10 0.18 -0.63 16 20 C 0.28 7.72 6.59 138.69 0.91 8.63 16 21 N -0.56 -17.46 11.25 -191.26 -2.15 -19.61 16 22 C 0.42 11.29 8.99 261.60 2.35 13.64 16 23 N -0.50 -10.16 10.48 -197.64 -2.07 -12.23 16 24 C 0.21 1.36 11.27 85.20 0.96 2.32 16 25 C -0.19 -0.33 10.07 22.14 0.22 -0.10 16 26 C 0.14 1.40 11.32 83.48 0.94 2.34 16 27 N -0.33 -7.57 3.91 -197.70 -0.77 -8.35 16 28 N -0.35 -9.57 12.78 -51.45 -0.66 -10.23 16 29 C 0.13 5.73 6.13 86.67 0.53 6.26 16 30 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 31 H 0.07 4.12 5.87 -2.39 -0.01 4.11 16 32 H -0.02 -1.03 8.14 -2.39 -0.02 -1.04 16 33 H 0.07 2.39 8.05 -2.39 -0.02 2.37 16 34 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.08 1.73 8.00 -2.38 -0.02 1.71 16 36 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 1.41 7.58 -2.39 -0.02 1.39 16 39 H 0.42 4.46 8.47 -92.71 -0.79 3.68 16 40 H 0.16 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.16 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.24 -1.07 8.06 -2.91 -0.02 -1.10 16 43 H 0.23 -2.27 8.06 -2.91 -0.02 -2.29 16 44 H 0.21 0.57 8.06 -2.91 -0.02 0.55 16 45 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.03 1.17 7.73 -2.38 -0.02 1.15 16 Total: -1.00 -99.91 385.43 1.29 -98.62 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: 0.23 Total: 2.97 kcal Atomic # 6 Polarization: 22.49 SS G_CDS: 9.44 Total: 31.93 kcal Atomic # 7 Polarization: -150.23 SS G_CDS: -10.36 Total: -160.59 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.05 Total: -22.05 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.11 kcal Total: -99.91 1.29 -98.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567714846.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.189 kcal (2) G-P(sol) polarization free energy of solvation -99.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds