Wall clock time and date at job start Wed Apr 1 2020 04:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99742 * 2 1 4 4 H 1.48503 * 109.46992 * 269.99667 * 3 2 1 5 5 H 1.48490 * 109.47249 * 30.00054 * 3 2 1 6 6 H 1.48506 * 109.46890 * 149.99836 * 3 2 1 7 7 C 1.38811 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99977 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00131 * 180.02562 * 7 2 1 10 10 C 1.46494 * 120.00047 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46988 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46987 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.51991 * 54.92820 * 12 11 10 14 14 C 1.53037 * 109.49670 * 175.00193 * 12 11 10 15 15 C 1.53035 * 109.52819 * 181.31600 * 14 12 11 16 16 C 1.53191 * 109.31204 * 298.64151 * 15 14 12 17 17 N 1.46926 * 108.77695 * 54.63556 * 16 15 14 18 18 C 1.34771 * 120.63548 * 126.41039 * 17 16 15 19 19 O 1.21559 * 119.99679 * 354.17798 * 18 17 16 20 20 C 1.47821 * 120.00199 * 174.17117 * 18 17 16 21 21 C 1.41579 * 120.37049 * 139.20675 * 20 18 17 22 22 C 1.34816 * 120.11298 * 179.97438 * 21 20 18 23 23 N 1.36061 * 120.83132 * 359.97438 * 22 21 20 24 24 N 1.40244 * 133.73608 * 180.02562 * 23 22 21 25 25 N 1.28969 * 107.02582 * 179.97438 * 24 23 22 26 26 N 1.28546 * 110.84185 * 359.97438 * 25 24 23 27 27 C 1.32627 * 110.18015 * 359.97438 * 26 25 24 28 28 C 1.38452 * 120.37679 * 318.92964 * 20 18 17 29 29 C 1.46931 * 118.73492 * 306.39375 * 17 16 15 30 30 H 0.96998 * 119.99446 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99390 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.47020 * 60.00348 * 10 9 7 33 33 H 1.08996 * 109.47119 * 300.00035 * 10 9 7 34 34 H 1.09005 * 109.46719 * 60.00454 * 11 10 9 35 35 H 1.08996 * 109.47455 * 300.00119 * 11 10 9 36 36 H 1.09001 * 109.46133 * 61.29606 * 14 12 11 37 37 H 1.09003 * 109.46079 * 301.32980 * 14 12 11 38 38 H 1.08998 * 109.50137 * 58.58932 * 15 14 12 39 39 H 1.08999 * 109.50215 * 178.65989 * 15 14 12 40 40 H 1.09004 * 109.58975 * 174.42297 * 16 15 14 41 41 H 1.09007 * 109.58735 * 294.84822 * 16 15 14 42 42 H 1.07998 * 119.94292 * 0.02562 * 21 20 18 43 43 H 1.08009 * 119.58540 * 180.02562 * 22 21 20 44 44 H 1.07999 * 120.51870 * 0.02562 * 28 20 18 45 45 H 1.08999 * 109.58500 * 173.39088 * 29 17 16 46 46 H 1.09000 * 109.58704 * 293.67583 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1912 0.0011 12 6 6.3814 -3.5163 0.0017 13 1 6.0523 -4.1272 -0.8389 14 6 7.8814 -3.2401 -0.1240 15 6 8.6447 -4.5661 -0.1564 16 6 8.4003 -5.3236 1.1525 17 7 6.9518 -5.4659 1.3531 18 6 6.4045 -6.6781 1.5709 19 8 7.0926 -7.6775 1.4979 20 6 4.9676 -6.7923 1.8986 21 6 4.1849 -7.8285 1.3347 22 6 2.8750 -7.9281 1.6375 23 7 2.2858 -7.0414 2.4848 24 7 0.9813 -6.8911 2.9773 25 7 0.9886 -5.8651 3.7588 26 7 2.1621 -5.3436 3.8179 27 6 3.0049 -6.0257 3.0541 28 6 4.3732 -5.8905 2.7649 29 6 6.1112 -4.2615 1.3122 30 1 -0.4849 0.8401 -0.0004 31 1 3.8646 -0.3621 0.0014 32 1 3.8492 -3.0422 -0.8892 33 1 3.8485 -3.0426 0.8908 34 1 5.8797 -1.6197 0.8912 35 1 5.8798 -1.6197 -0.8889 36 1 8.2148 -2.6499 0.7296 37 1 8.0732 -2.6881 -1.0441 38 1 8.2943 -5.1673 -0.9954 39 1 9.7108 -4.3696 -0.2699 40 1 8.8599 -6.3103 1.0951 41 1 8.8312 -4.7653 1.9837 42 1 4.6382 -8.5410 0.6614 43 1 2.2860 -8.7223 1.2028 44 1 4.9519 -5.0946 3.2099 45 1 5.0605 -4.5474 1.3601 46 1 6.3537 -3.6178 2.1578 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568065378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:02 Heat of formation + Delta-G solvation = 132.824777 kcal Electronic energy + Delta-G solvation = -30529.765181 eV Core-core repulsion = 26458.167913 eV Total energy + Delta-G solvation = -4071.597268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.55820 -40.98387 -38.84397 -38.02239 -35.52580 -34.62752 -33.52899 -32.68877 -32.26290 -31.11522 -30.63301 -27.98338 -26.72479 -25.13056 -24.94406 -24.21118 -23.13667 -22.31828 -21.17493 -20.76978 -19.92737 -19.03911 -17.79686 -17.62002 -17.48650 -17.03199 -16.54944 -15.80201 -15.57586 -15.11653 -15.02117 -14.75318 -14.38240 -14.17479 -13.71665 -13.63590 -13.52671 -13.50447 -13.21873 -13.12715 -12.84172 -12.60533 -12.50503 -12.35257 -11.87691 -11.68069 -11.44545 -11.31619 -11.28067 -11.18006 -11.00567 -10.82185 -10.69724 -10.51564 -10.38642 -10.27059 -10.07903 -9.59677 -9.07817 -8.91265 -8.88037 -7.25187 -5.76278 -3.12952 -0.25205 0.15555 1.47271 1.87199 2.15232 2.37448 2.79463 3.32124 3.36443 3.38336 3.44918 3.65798 3.91417 4.08496 4.35007 4.47318 4.52867 4.55522 4.58605 4.62877 4.68593 4.92438 4.95882 5.00792 5.17847 5.20168 5.24420 5.29273 5.35873 5.40580 5.43938 5.49660 5.49950 5.54459 5.61203 5.73753 5.77462 5.92450 5.93326 6.02818 6.03598 6.10670 6.19191 6.60571 6.65682 6.85813 7.56939 7.97968 8.21492 8.42030 9.20566 9.92577 10.11536 11.42086 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007786 B = 0.004449 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3595.164904 B = 6291.611209 C = 9363.054224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.087 0.913 9 N -0.755 5.755 10 C 0.157 3.843 11 C -0.125 4.125 12 C -0.095 4.095 13 H 0.078 0.922 14 C -0.117 4.117 15 C -0.134 4.134 16 C 0.111 3.889 17 N -0.598 5.598 18 C 0.567 3.433 19 O -0.525 6.525 20 C -0.065 4.065 21 C -0.100 4.100 22 C 0.112 3.888 23 N -0.296 5.296 24 N -0.105 5.105 25 N 0.001 4.999 26 N -0.303 5.303 27 C 0.238 3.762 28 C -0.050 4.050 29 C 0.092 3.908 30 H 0.260 0.740 31 H 0.361 0.639 32 H 0.023 0.977 33 H 0.022 0.978 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.176 0.824 43 H 0.189 0.811 44 H 0.174 0.826 45 H 0.096 0.904 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.267 -16.147 1.705 25.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.104 0.896 9 N -0.401 5.401 10 C 0.029 3.971 11 C -0.164 4.164 12 C -0.115 4.115 13 H 0.096 0.904 14 C -0.154 4.154 15 C -0.172 4.172 16 C -0.011 4.011 17 N -0.330 5.330 18 C 0.353 3.647 19 O -0.402 6.402 20 C -0.077 4.077 21 C -0.124 4.124 22 C -0.015 4.015 23 N -0.076 5.076 24 N -0.088 5.088 25 N 0.008 4.992 26 N -0.162 5.162 27 C -0.016 4.016 28 C -0.074 4.074 29 C -0.030 4.030 30 H 0.070 0.930 31 H 0.194 0.806 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.091 0.909 42 H 0.193 0.807 43 H 0.206 0.794 44 H 0.192 0.808 45 H 0.114 0.886 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 17.905 -16.403 2.379 24.399 hybrid contribution 1.046 1.050 -0.558 1.584 sum 18.951 -15.352 1.820 24.457 Atomic orbital electron populations 1.69712 1.05137 1.25853 1.57254 1.24682 0.95226 0.97225 1.01854 0.86535 0.79212 0.84984 0.77692 1.21116 1.21654 1.20314 1.19000 0.80586 0.94648 1.43390 0.89563 1.42679 1.04078 1.02155 1.91152 1.20649 0.88718 0.89517 0.98182 1.21822 0.96137 0.95708 1.02692 1.21447 0.95543 0.97223 0.97281 0.90365 1.21615 0.94224 0.96818 1.02770 1.21918 1.00859 0.96918 0.97515 1.21720 0.79238 1.02312 0.97800 1.48073 1.08745 1.06555 1.69636 1.17844 0.85894 0.83471 0.77448 1.90825 1.62080 1.35777 1.51514 1.20249 0.94892 0.95240 0.97305 1.20996 0.91175 0.98870 1.01366 1.21608 0.93937 0.93986 0.91975 1.49085 1.09416 1.20052 1.29076 1.82836 0.92797 1.17749 1.15379 1.77944 1.13173 1.00128 1.07978 1.75329 0.95538 1.23828 1.21547 1.22684 0.95586 0.88426 0.94941 1.20944 0.89069 0.99492 0.97866 1.22431 0.95728 0.85704 0.99103 0.93013 0.80638 0.95886 0.96058 0.91512 0.91225 0.91469 0.91199 0.91321 0.90475 0.88705 0.90855 0.80709 0.79445 0.80849 0.88621 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.82 13.97 55.49 0.78 -29.05 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 3 Si 0.89 22.15 27.74 -169.99 -4.71 17.43 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 7 C -0.25 -7.07 10.47 -15.06 -0.16 -7.23 16 8 H 0.09 2.70 8.06 -52.48 -0.42 2.27 16 9 N -0.76 -17.70 5.41 -59.91 -0.32 -18.02 16 10 C 0.16 2.81 6.02 -4.05 -0.02 2.79 16 11 C -0.13 -1.60 4.80 -26.73 -0.13 -1.73 16 12 C -0.10 -0.91 2.34 -90.52 -0.21 -1.12 16 13 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 14 C -0.12 -0.88 5.17 -26.69 -0.14 -1.02 16 15 C -0.13 -0.87 6.08 -26.61 -0.16 -1.04 16 16 C 0.11 0.79 6.44 -3.71 -0.02 0.77 16 17 N -0.60 -5.11 2.97 -173.90 -0.52 -5.63 16 18 C 0.57 5.53 7.33 -12.34 -0.09 5.44 16 19 O -0.53 -6.37 16.37 5.31 0.09 -6.28 16 20 C -0.07 -0.59 5.13 -104.62 -0.54 -1.12 16 21 C -0.10 -0.73 9.63 -39.52 -0.38 -1.11 16 22 C 0.11 0.90 11.19 -16.89 -0.19 0.71 16 23 N -0.30 -3.73 3.94 -12.43 -0.05 -3.78 16 24 N -0.10 -1.64 13.98 60.35 0.84 -0.80 16 25 N 0.00 0.01 13.35 60.35 0.81 0.82 16 26 N -0.30 -5.14 12.27 31.03 0.38 -4.76 16 27 C 0.24 3.24 8.02 -156.36 -1.25 1.98 16 28 C -0.05 -0.51 7.51 -38.65 -0.29 -0.80 16 29 C 0.09 0.83 3.83 -3.73 -0.01 0.81 16 30 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 31 H 0.36 8.18 5.53 -40.82 -0.23 7.96 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.39 6.70 -51.93 -0.35 0.04 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.74 7.00 -51.93 -0.36 0.38 16 41 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 42 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.19 0.81 8.06 -52.48 -0.42 0.39 16 44 H 0.17 1.48 6.69 -52.49 -0.35 1.13 16 45 H 0.10 0.97 3.51 -51.93 -0.18 0.78 16 46 H 0.08 0.66 8.13 -51.93 -0.42 0.24 16 LS Contribution 373.49 15.07 5.63 5.63 Total: -1.00 -37.13 373.49 -6.91 -44.04 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.13 Total: 2.98 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -3.70 Total: -2.58 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: 1.92 Total: -61.22 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: 0.09 Total: -6.28 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.43 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.13 -6.91 -44.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568065378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.867 kcal (2) G-P(sol) polarization free energy of solvation -37.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds