Wall clock time and date at job start Wed Apr 1 2020 04:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99742 * 2 1 4 4 H 1.48503 * 109.46992 * 269.99667 * 3 2 1 5 5 H 1.48490 * 109.47249 * 30.00054 * 3 2 1 6 6 H 1.48506 * 109.46890 * 149.99836 * 3 2 1 7 7 C 1.38811 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99977 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00131 * 180.02562 * 7 2 1 10 10 C 1.46494 * 120.00047 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46988 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46987 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.51991 * 54.92820 * 12 11 10 14 14 C 1.53037 * 109.49670 * 175.00193 * 12 11 10 15 15 C 1.53035 * 109.52819 * 181.31600 * 14 12 11 16 16 C 1.53191 * 109.31204 * 298.64151 * 15 14 12 17 17 N 1.46926 * 108.77695 * 54.63556 * 16 15 14 18 18 C 1.34771 * 120.63548 * 126.41039 * 17 16 15 19 19 O 1.21559 * 119.99679 * 354.17798 * 18 17 16 20 20 C 1.47821 * 120.00199 * 174.17117 * 18 17 16 21 21 C 1.41579 * 120.37049 * 139.20675 * 20 18 17 22 22 C 1.34816 * 120.11298 * 179.97438 * 21 20 18 23 23 N 1.36061 * 120.83132 * 359.97438 * 22 21 20 24 24 N 1.40244 * 133.73608 * 180.02562 * 23 22 21 25 25 N 1.28969 * 107.02582 * 179.97438 * 24 23 22 26 26 N 1.28546 * 110.84185 * 359.97438 * 25 24 23 27 27 C 1.32627 * 110.18015 * 359.97438 * 26 25 24 28 28 C 1.38452 * 120.37679 * 318.92964 * 20 18 17 29 29 C 1.46931 * 118.73492 * 306.39375 * 17 16 15 30 30 H 0.96998 * 119.99446 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99390 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.47020 * 60.00348 * 10 9 7 33 33 H 1.08996 * 109.47119 * 300.00035 * 10 9 7 34 34 H 1.09005 * 109.46719 * 60.00454 * 11 10 9 35 35 H 1.08996 * 109.47455 * 300.00119 * 11 10 9 36 36 H 1.09001 * 109.46133 * 61.29606 * 14 12 11 37 37 H 1.09003 * 109.46079 * 301.32980 * 14 12 11 38 38 H 1.08998 * 109.50137 * 58.58932 * 15 14 12 39 39 H 1.08999 * 109.50215 * 178.65989 * 15 14 12 40 40 H 1.09004 * 109.58975 * 174.42297 * 16 15 14 41 41 H 1.09007 * 109.58735 * 294.84822 * 16 15 14 42 42 H 1.07998 * 119.94292 * 0.02562 * 21 20 18 43 43 H 1.08009 * 119.58540 * 180.02562 * 22 21 20 44 44 H 1.07999 * 120.51870 * 0.02562 * 28 20 18 45 45 H 1.08999 * 109.58500 * 173.39088 * 29 17 16 46 46 H 1.09000 * 109.58704 * 293.67583 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1912 0.0011 12 6 6.3814 -3.5163 0.0017 13 1 6.0523 -4.1272 -0.8389 14 6 7.8814 -3.2401 -0.1240 15 6 8.6447 -4.5661 -0.1564 16 6 8.4003 -5.3236 1.1525 17 7 6.9518 -5.4659 1.3531 18 6 6.4045 -6.6781 1.5709 19 8 7.0926 -7.6775 1.4979 20 6 4.9676 -6.7923 1.8986 21 6 4.1849 -7.8285 1.3347 22 6 2.8750 -7.9281 1.6375 23 7 2.2858 -7.0414 2.4848 24 7 0.9813 -6.8911 2.9773 25 7 0.9886 -5.8651 3.7588 26 7 2.1621 -5.3436 3.8179 27 6 3.0049 -6.0257 3.0541 28 6 4.3732 -5.8905 2.7649 29 6 6.1112 -4.2615 1.3122 30 1 -0.4849 0.8401 -0.0004 31 1 3.8646 -0.3621 0.0014 32 1 3.8492 -3.0422 -0.8892 33 1 3.8485 -3.0426 0.8908 34 1 5.8797 -1.6197 0.8912 35 1 5.8798 -1.6197 -0.8889 36 1 8.2148 -2.6499 0.7296 37 1 8.0732 -2.6881 -1.0441 38 1 8.2943 -5.1673 -0.9954 39 1 9.7108 -4.3696 -0.2699 40 1 8.8599 -6.3103 1.0951 41 1 8.8312 -4.7653 1.9837 42 1 4.6382 -8.5410 0.6614 43 1 2.2860 -8.7223 1.2028 44 1 4.9519 -5.0946 3.2099 45 1 5.0605 -4.5474 1.3601 46 1 6.3537 -3.6178 2.1578 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568065378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:01 Heat of formation + Delta-G solvation = 106.567689 kcal Electronic energy + Delta-G solvation = -30530.903774 eV Core-core repulsion = 26458.167913 eV Total energy + Delta-G solvation = -4072.735861 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.59242 -41.76662 -39.69050 -38.90280 -37.03794 -35.52856 -34.81700 -33.74430 -33.27088 -32.73925 -31.56696 -29.29088 -27.52133 -26.08089 -25.92753 -25.44373 -24.19901 -23.63050 -22.34408 -21.76172 -20.67953 -19.90487 -19.61172 -18.63975 -18.36080 -18.05309 -17.32193 -16.68830 -16.55162 -16.39241 -15.97247 -15.86499 -15.67204 -15.18066 -14.93364 -14.80419 -14.53567 -14.40299 -14.30226 -14.10051 -13.94586 -13.72329 -13.68278 -13.25319 -13.09175 -12.96958 -12.75536 -12.59056 -12.33978 -12.29366 -12.04816 -11.93079 -11.86224 -11.74807 -11.54244 -11.40461 -11.33721 -11.06239 -10.94086 -9.83464 -9.72840 -9.31829 -8.04778 -5.39444 -1.07418 -0.76373 0.57972 0.89276 1.24781 1.36029 1.41811 1.49348 1.63577 1.97542 2.43230 2.47444 2.78186 3.13483 3.26770 3.34617 3.51840 3.62697 3.72527 3.82587 3.86560 4.03089 4.05260 4.11724 4.23863 4.29206 4.35732 4.41381 4.47475 4.54033 4.58537 4.63846 4.72097 4.78520 4.85827 4.87647 4.99247 5.00274 5.10013 5.21812 5.24969 5.32387 5.37719 5.45745 5.53991 5.70972 6.11597 6.19021 6.81098 7.06668 7.09170 7.82169 8.01801 9.17272 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007786 B = 0.004449 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3595.164904 B = 6291.611209 C = 9363.054224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.067 4.067 3 Si 0.962 3.038 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.244 1.244 7 C -0.238 4.238 8 H 0.042 0.958 9 N -0.758 5.758 10 C 0.152 3.848 11 C -0.112 4.112 12 C -0.088 4.088 13 H 0.071 0.929 14 C -0.112 4.112 15 C -0.127 4.127 16 C 0.107 3.893 17 N -0.591 5.591 18 C 0.569 3.431 19 O -0.547 6.547 20 C -0.055 4.055 21 C -0.083 4.083 22 C 0.109 3.891 23 N -0.295 5.295 24 N -0.126 5.126 25 N -0.034 5.034 26 N -0.343 5.343 27 C 0.224 3.776 28 C -0.055 4.055 29 C 0.092 3.908 30 H 0.258 0.742 31 H 0.369 0.631 32 H 0.014 0.986 33 H 0.018 0.982 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.211 0.789 43 H 0.228 0.772 44 H 0.187 0.813 45 H 0.081 0.919 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.578 -16.196 0.706 28.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.258 4.258 3 Si 0.788 3.212 4 H -0.200 1.200 5 H -0.224 1.224 6 H -0.168 1.168 7 C -0.369 4.369 8 H 0.060 0.940 9 N -0.404 5.404 10 C 0.026 3.974 11 C -0.150 4.150 12 C -0.108 4.108 13 H 0.089 0.911 14 C -0.149 4.149 15 C -0.165 4.165 16 C -0.014 4.014 17 N -0.322 5.322 18 C 0.357 3.643 19 O -0.426 6.426 20 C -0.067 4.067 21 C -0.106 4.106 22 C -0.018 4.018 23 N -0.075 5.075 24 N -0.109 5.109 25 N -0.027 5.027 26 N -0.205 5.205 27 C -0.028 4.028 28 C -0.079 4.079 29 C -0.030 4.030 30 H 0.067 0.933 31 H 0.202 0.798 32 H 0.032 0.968 33 H 0.036 0.964 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.227 0.773 43 H 0.244 0.756 44 H 0.204 0.796 45 H 0.099 0.901 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 22.285 -16.476 1.371 27.749 hybrid contribution -0.185 0.868 -0.371 0.962 sum 22.100 -15.608 1.000 27.074 Atomic orbital electron populations 1.69925 1.07505 1.26848 1.59434 1.25635 0.96174 1.01768 1.02226 0.85310 0.78794 0.78771 0.78297 1.20046 1.22401 1.16809 1.18930 0.83062 0.93008 1.41912 0.93953 1.42685 1.02244 1.04500 1.90960 1.20871 0.91962 0.87193 0.97401 1.21700 0.92139 0.97713 1.03432 1.21353 0.96851 0.95314 0.97238 0.91062 1.21584 0.92210 0.97589 1.03553 1.21874 1.01968 0.95961 0.96669 1.21908 0.78017 1.02511 0.98955 1.48103 1.09457 1.05939 1.68671 1.17803 0.85682 0.83549 0.77314 1.90829 1.62450 1.36453 1.52830 1.20434 0.94973 0.94980 0.96270 1.21478 0.90471 0.98262 1.00401 1.22484 0.94671 0.93860 0.90777 1.49196 1.08522 1.20498 1.29292 1.82662 0.94482 1.17724 1.16053 1.77866 1.14125 1.01262 1.09436 1.75143 0.96024 1.25628 1.23687 1.22935 0.96392 0.88555 0.94943 1.21081 0.87703 1.00524 0.98595 1.22408 0.95092 0.86013 0.99498 0.93313 0.79790 0.96798 0.96361 0.90495 0.90715 0.90291 0.90780 0.92169 0.88349 0.89229 0.89032 0.77271 0.75561 0.79580 0.90052 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -65.41 13.97 21.65 0.30 -65.10 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 3 Si 0.96 45.54 27.74 68.60 1.90 47.45 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.24 -10.11 6.52 99.48 0.65 -9.46 16 7 C -0.24 -14.00 10.47 84.03 0.88 -13.12 16 8 H 0.04 2.80 8.06 -2.91 -0.02 2.78 16 9 N -0.76 -34.97 5.41 -343.46 -1.86 -36.82 16 10 C 0.15 5.33 6.02 86.38 0.52 5.85 16 11 C -0.11 -2.54 4.80 30.60 0.15 -2.39 16 12 C -0.09 -1.42 2.34 -10.73 -0.03 -1.44 16 13 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 14 C -0.11 -1.23 5.17 30.62 0.16 -1.07 16 15 C -0.13 -1.16 6.08 30.67 0.19 -0.97 16 16 C 0.11 1.15 6.44 86.36 0.56 1.71 16 17 N -0.59 -8.39 2.97 -822.39 -2.44 -10.83 16 18 C 0.57 9.67 7.33 86.78 0.64 10.31 16 19 O -0.55 -11.83 16.37 -3.90 -0.06 -11.89 16 20 C -0.05 -0.88 5.13 -19.87 -0.10 -0.98 16 21 C -0.08 -0.98 9.63 22.31 0.21 -0.76 16 22 C 0.11 1.54 11.19 83.25 0.93 2.48 16 23 N -0.30 -7.55 3.94 -193.22 -0.76 -8.31 16 24 N -0.13 -4.16 13.98 37.02 0.52 -3.64 16 25 N -0.03 -1.31 13.35 37.02 0.49 -0.81 16 26 N -0.34 -12.46 12.27 -55.73 -0.68 -13.14 16 27 C 0.22 6.29 8.02 134.05 1.07 7.36 16 28 C -0.06 -1.10 7.51 22.87 0.17 -0.92 16 29 C 0.09 1.41 3.83 86.35 0.33 1.74 16 30 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 31 H 0.37 15.80 5.53 -92.71 -0.51 15.28 16 32 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.02 0.67 6.70 -2.39 -0.02 0.65 16 34 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.09 1.13 7.00 -2.38 -0.02 1.11 16 41 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.21 1.10 8.06 -2.91 -0.02 1.08 16 43 H 0.23 1.30 8.06 -2.91 -0.02 1.27 16 44 H 0.19 3.04 6.69 -2.91 -0.02 3.02 16 45 H 0.08 1.52 3.51 -2.39 -0.01 1.51 16 46 H 0.10 1.25 8.13 -2.39 -0.02 1.23 16 Total: -1.00 -86.00 373.49 4.01 -81.99 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.45 Total: 16.90 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 6.15 Total: 4.21 kcal Atomic # 7 Polarization: -134.23 SS G_CDS: -4.43 Total: -138.66 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.06 Total: -11.89 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.90 Total: 47.45 kcal Total: -86.00 4.01 -81.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568065378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.560 kcal (2) G-P(sol) polarization free energy of solvation -86.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds