Wall clock time and date at job start Wed Apr 1 2020 04:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86807 * 119.99881 * 2 1 4 4 H 1.48494 * 109.47273 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46871 * 300.00116 * 3 2 1 6 6 H 1.48505 * 109.46968 * 59.99795 * 3 2 1 7 7 C 1.38808 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99797 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00123 * 0.02562 * 7 2 1 10 10 C 1.46508 * 120.00238 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46951 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46459 * 179.97438 * 11 10 9 13 13 H 1.08991 * 109.49762 * 304.93661 * 12 11 10 14 14 C 1.53102 * 109.48305 * 184.85259 * 12 11 10 15 15 C 1.53046 * 109.50169 * 178.69954 * 14 12 11 16 16 C 1.53191 * 109.33699 * 61.35317 * 15 14 12 17 17 N 1.46935 * 108.77422 * 305.34745 * 16 15 14 18 18 C 1.34772 * 120.62940 * 233.63310 * 17 16 15 19 19 O 1.21554 * 119.99748 * 174.80873 * 18 17 16 20 20 C 1.47825 * 120.00363 * 354.80758 * 18 17 16 21 21 C 1.41579 * 120.37238 * 321.72142 * 20 18 17 22 22 C 1.34820 * 120.11698 * 179.97438 * 21 20 18 23 23 N 1.36058 * 120.82493 * 359.95512 * 22 21 20 24 24 N 1.40245 * 133.73380 * 180.02562 * 23 22 21 25 25 N 1.28964 * 107.02846 * 179.97438 * 24 23 22 26 26 N 1.28543 * 110.83883 * 359.97438 * 25 24 23 27 27 C 1.32623 * 110.18577 * 359.97438 * 26 25 24 28 28 C 1.38448 * 120.37637 * 141.44209 * 20 18 17 29 29 C 1.46928 * 118.73578 * 53.60882 * 17 16 15 30 30 H 0.97003 * 120.00168 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99909 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.46828 * 59.99348 * 10 9 7 33 33 H 1.08997 * 109.46436 * 299.99904 * 10 9 7 34 34 H 1.08993 * 109.47035 * 59.99886 * 11 10 9 35 35 H 1.09000 * 109.47103 * 299.99407 * 11 10 9 36 36 H 1.09002 * 109.50838 * 58.67447 * 14 12 11 37 37 H 1.09005 * 109.45653 * 298.69403 * 14 12 11 38 38 H 1.08996 * 109.49710 * 301.38534 * 15 14 12 39 39 H 1.09004 * 109.49874 * 181.31719 * 15 14 12 40 40 H 1.09001 * 109.59001 * 65.13012 * 16 15 14 41 41 H 1.09002 * 109.58713 * 185.42207 * 16 15 14 42 42 H 1.08000 * 119.94428 * 359.97438 * 21 20 18 43 43 H 1.07997 * 119.58766 * 179.97438 * 22 21 20 44 44 H 1.08006 * 120.51790 * 0.02562 * 28 20 18 45 45 H 1.09003 * 109.58409 * 66.18182 * 29 17 16 46 46 H 1.08999 * 109.58121 * 186.60102 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 1.8291 -6.1447 0.0005 13 1 2.5199 -6.1654 -0.8422 14 6 0.8389 -7.3061 -0.1209 15 6 1.6059 -8.6301 -0.1542 16 6 2.3884 -8.7960 1.1522 17 7 3.2369 -7.6125 1.3488 18 6 4.5611 -7.7447 1.5614 19 8 5.2674 -6.7577 1.6284 20 6 5.1548 -9.0900 1.7129 21 6 4.4601 -10.1040 2.4154 22 6 5.0062 -11.3293 2.5501 23 7 6.2255 -11.6117 2.0164 24 7 7.0302 -12.7600 1.9908 25 7 8.0991 -12.4576 1.3357 26 7 8.0618 -11.2355 0.9389 27 6 6.9307 -10.6624 1.3276 28 6 6.3939 -9.3742 1.1646 29 6 2.6141 -6.2824 1.3087 30 1 -0.4850 0.8401 0.0004 31 1 0.3557 -2.3880 0.0005 32 1 2.6849 -3.7144 0.8905 33 1 2.6848 -3.7144 -0.8895 34 1 0.4370 -4.7621 -0.8885 35 1 0.4377 -4.7618 0.8914 36 1 0.2616 -7.1977 -1.0391 37 1 0.1640 -7.2988 0.7350 38 1 2.2988 -8.6280 -0.9956 39 1 0.9024 -9.4554 -0.2642 40 1 1.6924 -8.8890 1.9859 41 1 3.0109 -9.6889 1.0944 42 1 3.4910 -9.8957 2.8441 43 1 4.4689 -12.0964 3.0880 44 1 6.9399 -8.6172 0.6211 45 1 1.9364 -6.1706 2.1552 46 1 3.3874 -5.5155 1.3534 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568065379.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:07 Heat of formation + Delta-G solvation = 129.894259 kcal Electronic energy + Delta-G solvation = -29267.942652 eV Core-core repulsion = 25196.218307 eV Total energy + Delta-G solvation = -4071.724345 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -43.93552 -41.06166 -39.04826 -38.00934 -35.55837 -34.59716 -33.78525 -32.62353 -32.37327 -31.14069 -30.70753 -27.81920 -26.81002 -25.49058 -24.79570 -24.19912 -23.40925 -22.72550 -21.28355 -20.67005 -19.90686 -19.19565 -18.59298 -17.43489 -17.09929 -16.96436 -16.61813 -15.94766 -15.83594 -15.26312 -14.96623 -14.78283 -14.44989 -14.02415 -13.94258 -13.75971 -13.65145 -13.47880 -13.32403 -13.14912 -13.01003 -12.85794 -12.63781 -12.31891 -12.08999 -11.62569 -11.58655 -11.28075 -11.25692 -11.14994 -10.88924 -10.74138 -10.71273 -10.53317 -10.33895 -10.26902 -9.93715 -9.66954 -9.28736 -9.01753 -8.86288 -6.91164 -5.76181 -3.04533 -0.49323 -0.22588 1.09958 1.51893 1.96726 2.27302 2.62742 3.09000 3.37814 3.44230 3.50343 3.52578 3.62022 3.81684 4.19058 4.20247 4.34657 4.50848 4.54912 4.59749 4.65117 4.77082 4.81524 4.91689 4.96303 5.00054 5.06526 5.23067 5.26401 5.40835 5.45324 5.52540 5.55444 5.66015 5.67173 5.74304 5.84468 5.91337 6.03136 6.10647 6.23318 6.36037 6.37354 6.83856 6.86286 6.89071 7.59675 7.72495 7.80524 8.43146 9.54302 10.12285 10.46644 11.46860 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.019349 B = 0.002031 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.742378 B =13780.536783 C =14837.753470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.150 3.850 11 C -0.119 4.119 12 C -0.096 4.096 13 H 0.076 0.924 14 C -0.117 4.117 15 C -0.135 4.135 16 C 0.092 3.908 17 N -0.598 5.598 18 C 0.558 3.442 19 O -0.510 6.510 20 C -0.062 4.062 21 C -0.118 4.118 22 C 0.107 3.893 23 N -0.297 5.297 24 N -0.107 5.107 25 N -0.006 5.006 26 N -0.312 5.312 27 C 0.240 3.760 28 C -0.030 4.030 29 C 0.113 3.887 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.020 0.980 33 H 0.017 0.983 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.178 0.822 43 H 0.189 0.811 44 H 0.179 0.821 45 H 0.076 0.924 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.010 -28.118 4.924 28.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.157 4.157 12 C -0.116 4.116 13 H 0.094 0.906 14 C -0.154 4.154 15 C -0.174 4.174 16 C -0.031 4.031 17 N -0.331 5.331 18 C 0.344 3.656 19 O -0.385 6.385 20 C -0.074 4.074 21 C -0.142 4.142 22 C -0.020 4.020 23 N -0.077 5.077 24 N -0.090 5.090 25 N 0.001 4.999 26 N -0.172 5.172 27 C -0.014 4.014 28 C -0.054 4.054 29 C -0.007 4.007 30 H 0.064 0.936 31 H 0.216 0.784 32 H 0.038 0.962 33 H 0.035 0.965 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.195 0.805 43 H 0.206 0.794 44 H 0.196 0.804 45 H 0.094 0.906 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.642 -28.714 4.825 29.484 hybrid contribution -0.721 1.413 0.186 1.597 sum 3.921 -27.301 5.011 28.033 Atomic orbital electron populations 1.69671 1.05100 1.25486 1.58123 1.24747 0.95555 0.97730 1.03164 0.86116 0.78870 0.84078 0.77164 1.20498 1.21889 1.21866 1.19299 0.91116 0.84189 1.42208 0.91109 1.42375 1.05844 1.00115 1.89489 1.20718 0.93536 0.85599 0.97882 1.21736 0.98671 0.92805 1.02502 1.21481 0.97220 0.95294 0.97587 0.90591 1.21625 0.97716 0.93263 1.02816 1.21935 0.99498 0.98804 0.97118 1.22227 0.94197 0.87779 0.98874 1.48052 1.06381 1.08695 1.69978 1.17830 0.82289 0.87455 0.78058 1.90913 1.59912 1.38392 1.49267 1.20344 0.94317 0.95153 0.97542 1.21400 1.01909 0.90474 1.00385 1.21598 0.83262 0.99160 0.97980 1.49058 1.14976 1.10383 1.33284 1.82826 0.99591 1.02297 1.24335 1.77916 1.12170 1.06477 1.03375 1.75295 1.16154 1.01040 1.24690 1.22742 0.90534 0.93191 0.94926 1.20746 0.93844 0.91934 0.98833 1.21979 0.98012 0.82747 0.98011 0.93621 0.78366 0.96198 0.96480 0.91421 0.91688 0.91177 0.91476 0.91319 0.90466 0.90388 0.89384 0.80472 0.79390 0.80385 0.90621 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.55 16 9 N -0.73 -18.53 5.60 -59.90 -0.34 -18.86 16 10 C 0.15 2.92 6.02 -4.04 -0.02 2.90 16 11 C -0.12 -1.69 4.80 -26.73 -0.13 -1.82 16 12 C -0.10 -1.02 2.34 -90.47 -0.21 -1.23 16 13 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 14 C -0.12 -0.89 5.17 -26.65 -0.14 -1.03 16 15 C -0.14 -0.73 6.08 -26.61 -0.16 -0.89 16 16 C 0.09 0.40 4.85 -3.71 -0.02 0.38 16 17 N -0.60 -4.83 2.97 -173.88 -0.52 -5.35 16 18 C 0.56 5.33 7.36 -12.34 -0.09 5.24 16 19 O -0.51 -7.16 16.33 5.32 0.09 -7.07 16 20 C -0.06 -0.41 5.22 -104.63 -0.55 -0.96 16 21 C -0.12 -0.38 7.31 -39.52 -0.29 -0.67 16 22 C 0.11 0.39 11.19 -16.89 -0.19 0.20 16 23 N -0.30 -2.39 3.94 -12.43 -0.05 -2.44 16 24 N -0.11 -1.13 13.98 60.35 0.84 -0.29 16 25 N -0.01 -0.08 13.35 60.35 0.81 0.73 16 26 N -0.31 -3.72 12.27 31.03 0.38 -3.34 16 27 C 0.24 2.26 8.02 -156.36 -1.25 1.01 16 28 C -0.03 -0.23 9.74 -38.65 -0.38 -0.61 16 29 C 0.11 1.19 5.33 -3.71 -0.02 1.17 16 30 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.38 10.06 7.67 -40.82 -0.31 9.74 16 32 H 0.02 0.40 6.70 -51.93 -0.35 0.05 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.21 8.10 -51.93 -0.42 -0.21 16 41 H 0.09 0.22 4.57 -51.93 -0.24 -0.01 16 42 H 0.18 0.06 6.38 -52.49 -0.33 -0.28 16 43 H 0.19 -0.01 8.06 -52.49 -0.42 -0.43 16 44 H 0.18 1.32 8.06 -52.48 -0.42 0.90 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.10 1.41 5.71 -51.93 -0.30 1.11 16 LS Contribution 375.97 15.07 5.67 5.67 Total: -1.00 -36.23 375.97 -7.26 -43.48 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.15 Total: 1.18 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -3.69 Total: -3.72 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 1.85 Total: -57.12 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: 0.09 Total: -7.07 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.23 -7.26 -43.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568065379.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.379 kcal (2) G-P(sol) polarization free energy of solvation -36.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds