Wall clock time and date at job start Wed Apr 1 2020 04:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86807 * 119.99881 * 2 1 4 4 H 1.48494 * 109.47273 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46871 * 300.00116 * 3 2 1 6 6 H 1.48505 * 109.46968 * 59.99795 * 3 2 1 7 7 C 1.38808 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99797 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00123 * 0.02562 * 7 2 1 10 10 C 1.46508 * 120.00238 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46951 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46459 * 179.97438 * 11 10 9 13 13 H 1.08991 * 109.49762 * 304.93661 * 12 11 10 14 14 C 1.53102 * 109.48305 * 184.85259 * 12 11 10 15 15 C 1.53046 * 109.50169 * 178.69954 * 14 12 11 16 16 C 1.53191 * 109.33699 * 61.35317 * 15 14 12 17 17 N 1.46935 * 108.77422 * 305.34745 * 16 15 14 18 18 C 1.34772 * 120.62940 * 233.63310 * 17 16 15 19 19 O 1.21554 * 119.99748 * 174.80873 * 18 17 16 20 20 C 1.47825 * 120.00363 * 354.80758 * 18 17 16 21 21 C 1.41579 * 120.37238 * 321.72142 * 20 18 17 22 22 C 1.34820 * 120.11698 * 179.97438 * 21 20 18 23 23 N 1.36058 * 120.82493 * 359.95512 * 22 21 20 24 24 N 1.40245 * 133.73380 * 180.02562 * 23 22 21 25 25 N 1.28964 * 107.02846 * 179.97438 * 24 23 22 26 26 N 1.28543 * 110.83883 * 359.97438 * 25 24 23 27 27 C 1.32623 * 110.18577 * 359.97438 * 26 25 24 28 28 C 1.38448 * 120.37637 * 141.44209 * 20 18 17 29 29 C 1.46928 * 118.73578 * 53.60882 * 17 16 15 30 30 H 0.97003 * 120.00168 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99909 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.46828 * 59.99348 * 10 9 7 33 33 H 1.08997 * 109.46436 * 299.99904 * 10 9 7 34 34 H 1.08993 * 109.47035 * 59.99886 * 11 10 9 35 35 H 1.09000 * 109.47103 * 299.99407 * 11 10 9 36 36 H 1.09002 * 109.50838 * 58.67447 * 14 12 11 37 37 H 1.09005 * 109.45653 * 298.69403 * 14 12 11 38 38 H 1.08996 * 109.49710 * 301.38534 * 15 14 12 39 39 H 1.09004 * 109.49874 * 181.31719 * 15 14 12 40 40 H 1.09001 * 109.59001 * 65.13012 * 16 15 14 41 41 H 1.09002 * 109.58713 * 185.42207 * 16 15 14 42 42 H 1.08000 * 119.94428 * 359.97438 * 21 20 18 43 43 H 1.07997 * 119.58766 * 179.97438 * 22 21 20 44 44 H 1.08006 * 120.51790 * 0.02562 * 28 20 18 45 45 H 1.09003 * 109.58409 * 66.18182 * 29 17 16 46 46 H 1.08999 * 109.58121 * 186.60102 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 1.8291 -6.1447 0.0005 13 1 2.5199 -6.1654 -0.8422 14 6 0.8389 -7.3061 -0.1209 15 6 1.6059 -8.6301 -0.1542 16 6 2.3884 -8.7960 1.1522 17 7 3.2369 -7.6125 1.3488 18 6 4.5611 -7.7447 1.5614 19 8 5.2674 -6.7577 1.6284 20 6 5.1548 -9.0900 1.7129 21 6 4.4601 -10.1040 2.4154 22 6 5.0062 -11.3293 2.5501 23 7 6.2255 -11.6117 2.0164 24 7 7.0302 -12.7600 1.9908 25 7 8.0991 -12.4576 1.3357 26 7 8.0618 -11.2355 0.9389 27 6 6.9307 -10.6624 1.3276 28 6 6.3939 -9.3742 1.1646 29 6 2.6141 -6.2824 1.3087 30 1 -0.4850 0.8401 0.0004 31 1 0.3557 -2.3880 0.0005 32 1 2.6849 -3.7144 0.8905 33 1 2.6848 -3.7144 -0.8895 34 1 0.4370 -4.7621 -0.8885 35 1 0.4377 -4.7618 0.8914 36 1 0.2616 -7.1977 -1.0391 37 1 0.1640 -7.2988 0.7350 38 1 2.2988 -8.6280 -0.9956 39 1 0.9024 -9.4554 -0.2642 40 1 1.6924 -8.8890 1.9859 41 1 3.0109 -9.6889 1.0944 42 1 3.4910 -9.8957 2.8441 43 1 4.4689 -12.0964 3.0880 44 1 6.9399 -8.6172 0.6211 45 1 1.9364 -6.1706 2.1552 46 1 3.3874 -5.5155 1.3534 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568065379.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:06 Heat of formation + Delta-G solvation = 104.528639 kcal Electronic energy + Delta-G solvation = -29269.042588 eV Core-core repulsion = 25196.218307 eV Total energy + Delta-G solvation = -4072.824281 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.59906 -41.76095 -39.69289 -38.83540 -36.99593 -35.40857 -34.95003 -33.58160 -33.17213 -32.23714 -31.72189 -29.14650 -27.56241 -26.22966 -25.72199 -25.37017 -24.08383 -23.93488 -22.28352 -21.74269 -20.63808 -19.78897 -19.24467 -19.05641 -18.10309 -17.58279 -17.38665 -16.74373 -16.63607 -16.41039 -15.87836 -15.63639 -15.49081 -15.25063 -15.14728 -14.82818 -14.45733 -14.30442 -14.26360 -14.11437 -13.88782 -13.76725 -13.35291 -13.18076 -12.96922 -12.86944 -12.76697 -12.55082 -12.30151 -12.29671 -12.09653 -11.93782 -11.89300 -11.74840 -11.57133 -11.41063 -11.18389 -10.95603 -10.90618 -9.86860 -9.69745 -9.01248 -7.97758 -5.26296 -1.06203 -0.77697 0.56961 0.87918 1.26958 1.45918 1.46235 1.56874 1.59876 2.01628 2.49260 2.54215 2.79966 3.11309 3.35594 3.36535 3.63469 3.68151 3.83678 3.90409 3.92973 4.02128 4.10892 4.12660 4.25185 4.37003 4.44417 4.47095 4.53444 4.55832 4.63327 4.72481 4.75169 4.79597 4.87528 4.90213 4.94252 5.08352 5.17146 5.21505 5.28749 5.36119 5.41780 5.46263 5.48528 5.56603 6.21833 6.25871 6.87515 7.08276 7.31813 8.07995 8.31833 9.25713 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.019349 B = 0.002031 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.742378 B =13780.536783 C =14837.753470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.247 4.247 8 H 0.069 0.931 9 N -0.746 5.746 10 C 0.148 3.852 11 C -0.105 4.105 12 C -0.086 4.086 13 H 0.059 0.941 14 C -0.113 4.113 15 C -0.132 4.132 16 C 0.083 3.917 17 N -0.590 5.590 18 C 0.555 3.445 19 O -0.566 6.566 20 C -0.047 4.047 21 C -0.100 4.100 22 C 0.118 3.882 23 N -0.294 5.294 24 N -0.119 5.119 25 N -0.032 5.032 26 N -0.347 5.347 27 C 0.231 3.769 28 C -0.045 4.045 29 C 0.116 3.884 30 H 0.252 0.748 31 H 0.375 0.625 32 H 0.018 0.982 33 H 0.007 0.993 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.222 0.778 43 H 0.237 0.763 44 H 0.169 0.831 45 H 0.091 0.909 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.954 -30.450 6.319 31.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.195 1.195 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.379 4.379 8 H 0.087 0.913 9 N -0.389 5.389 10 C 0.022 3.978 11 C -0.143 4.143 12 C -0.106 4.106 13 H 0.078 0.922 14 C -0.150 4.150 15 C -0.170 4.170 16 C -0.037 4.037 17 N -0.321 5.321 18 C 0.343 3.657 19 O -0.446 6.446 20 C -0.059 4.059 21 C -0.122 4.122 22 C -0.008 4.008 23 N -0.074 5.074 24 N -0.102 5.102 25 N -0.024 5.024 26 N -0.208 5.208 27 C -0.022 4.022 28 C -0.069 4.069 29 C -0.006 4.006 30 H 0.061 0.939 31 H 0.207 0.793 32 H 0.036 0.964 33 H 0.025 0.975 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.126 0.874 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.238 0.762 43 H 0.253 0.747 44 H 0.187 0.813 45 H 0.109 0.891 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.580 -31.108 6.212 31.827 hybrid contribution -0.202 2.176 -0.233 2.198 sum 2.378 -28.932 5.979 29.639 Atomic orbital electron populations 1.69807 1.06417 1.26071 1.59445 1.25556 0.96500 1.01020 1.03634 0.85096 0.78080 0.79831 0.76902 1.19483 1.21768 1.21651 1.19640 0.91341 0.85648 1.41301 0.91264 1.42593 1.05697 1.01273 1.89366 1.20888 0.94459 0.85454 0.97004 1.21600 0.97581 0.92591 1.02549 1.21358 0.97403 0.94746 0.97119 0.92233 1.21604 0.97126 0.92920 1.03391 1.21938 0.99665 0.98226 0.97169 1.22671 0.94580 0.86683 0.99765 1.48105 1.06259 1.09056 1.68702 1.18210 0.82448 0.87835 0.77226 1.90897 1.61303 1.40450 1.51901 1.20199 0.93814 0.94442 0.97484 1.21840 1.02842 0.88857 0.98691 1.22569 0.81422 1.00372 0.96411 1.49224 1.15888 1.09301 1.32944 1.82684 0.99713 1.03199 1.24614 1.77866 1.13260 1.06914 1.04405 1.75166 1.18050 1.01394 1.26238 1.22672 0.90384 0.93642 0.95460 1.20649 0.94692 0.91412 1.00176 1.21757 0.97069 0.83426 0.98370 0.93878 0.79253 0.96405 0.97545 0.91797 0.91105 0.91464 0.89970 0.92654 0.87372 0.86782 0.86900 0.76156 0.74659 0.81325 0.89133 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.26 13.06 21.65 0.28 -58.98 16 2 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16 3 Si 0.97 46.91 29.55 68.60 2.03 48.94 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.75 -38.53 5.60 -343.44 -1.92 -40.46 16 10 C 0.15 5.93 6.02 86.38 0.52 6.45 16 11 C -0.10 -2.96 4.80 30.60 0.15 -2.82 16 12 C -0.09 -1.75 2.34 -10.69 -0.03 -1.77 16 13 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 14 C -0.11 -1.36 5.17 30.64 0.16 -1.20 16 15 C -0.13 -0.83 6.08 30.67 0.19 -0.65 16 16 C 0.08 0.29 4.85 86.36 0.42 0.71 16 17 N -0.59 -8.05 2.97 -822.32 -2.44 -10.49 16 18 C 0.56 9.99 7.36 86.78 0.64 10.63 16 19 O -0.57 -16.55 16.33 -3.89 -0.06 -16.62 16 20 C -0.05 -0.53 5.22 -19.87 -0.10 -0.63 16 21 C -0.10 -0.14 7.31 22.31 0.16 0.02 16 22 C 0.12 0.29 11.19 83.25 0.93 1.22 16 23 N -0.29 -4.10 3.94 -193.23 -0.76 -4.86 16 24 N -0.12 -2.40 13.98 37.02 0.52 -1.88 16 25 N -0.03 -0.80 13.35 37.02 0.49 -0.30 16 26 N -0.35 -8.64 12.27 -55.73 -0.68 -9.32 16 27 C 0.23 4.29 8.02 134.05 1.07 5.37 16 28 C -0.05 -0.70 9.74 22.87 0.22 -0.47 16 29 C 0.12 2.31 5.33 86.36 0.46 2.78 16 30 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 31 H 0.38 20.17 7.67 -92.71 -0.71 19.46 16 32 H 0.02 0.73 6.70 -2.39 -0.02 0.72 16 33 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.11 -0.25 8.10 -2.39 -0.02 -0.27 16 41 H 0.11 -0.13 4.57 -2.39 -0.01 -0.14 16 42 H 0.22 -1.51 6.38 -2.91 -0.02 -1.53 16 43 H 0.24 -1.64 8.06 -2.91 -0.02 -1.66 16 44 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 45 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.07 1.86 5.71 -2.39 -0.01 1.84 16 Total: -1.00 -85.12 375.97 3.86 -81.26 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.32 Total: 10.36 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 6.10 Total: 2.35 kcal Atomic # 7 Polarization: -121.78 SS G_CDS: -4.52 Total: -126.30 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.06 Total: -16.62 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -85.12 3.86 -81.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568065379.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.788 kcal (2) G-P(sol) polarization free energy of solvation -85.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds