Wall clock time and date at job start Wed Apr 1 2020 04:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 120.00492 * 2 1 4 4 H 1.48503 * 109.47082 * 270.00661 * 3 2 1 5 5 H 1.48501 * 109.46706 * 30.00352 * 3 2 1 6 6 H 1.48496 * 109.47078 * 150.00180 * 3 2 1 7 7 C 1.38813 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99950 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00408 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00458 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47484 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47153 * 55.00066 * 11 10 9 13 13 C 1.53002 * 109.46817 * 295.00296 * 11 10 9 14 14 C 1.53006 * 109.46711 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47445 * 59.99695 * 14 13 11 16 16 C 1.53002 * 109.47092 * 300.00075 * 15 14 13 17 17 C 1.53000 * 109.47060 * 175.00385 * 11 10 9 18 18 H 1.08992 * 109.47399 * 59.99823 * 17 11 10 19 19 N 1.46500 * 109.47023 * 299.99760 * 17 11 10 20 20 C 1.34777 * 120.00075 * 155.00453 * 19 17 11 21 21 O 1.21578 * 119.99640 * 359.97438 * 20 19 17 22 22 C 1.47693 * 120.00138 * 180.02562 * 20 19 17 23 23 C 1.41598 * 120.03167 * 359.97438 * 22 20 19 24 24 C 1.35779 * 119.54745 * 179.97438 * 23 22 20 25 25 C 1.40860 * 119.39124 * 0.02562 * 24 23 22 26 26 N 1.32487 * 133.41559 * 179.97438 * 25 24 23 27 27 N 1.28534 * 110.24298 * 179.97438 * 26 25 24 28 28 N 1.28982 * 110.84205 * 359.97438 * 27 26 25 29 29 N 1.36928 * 119.93371 * 359.97438 * 25 24 23 30 30 C 1.35498 * 120.84289 * 359.73849 * 29 25 24 31 31 H 0.97010 * 119.99490 * 359.97438 * 1 2 3 32 32 H 0.97005 * 119.99958 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.46667 * 60.00304 * 10 9 7 34 34 H 1.09008 * 109.47241 * 300.00661 * 10 9 7 35 35 H 1.09002 * 109.47075 * 299.99262 * 13 11 10 36 36 H 1.08996 * 109.47407 * 60.00219 * 13 11 10 37 37 H 1.09001 * 109.46726 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.46589 * 299.99365 * 14 13 11 39 39 H 1.09002 * 109.47045 * 59.99942 * 15 14 13 40 40 H 1.09000 * 109.47140 * 179.97438 * 15 14 13 41 41 H 1.09000 * 109.46497 * 180.02562 * 16 15 14 42 42 H 1.09002 * 109.47067 * 299.99853 * 16 15 14 43 43 H 0.97006 * 120.00223 * 335.00118 * 19 17 11 44 44 H 1.07999 * 120.22717 * 0.02562 * 23 22 20 45 45 H 1.07998 * 120.30411 * 180.02562 * 24 23 22 46 46 H 1.07997 * 119.83150 * 180.25866 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2023 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.6163 -2.1915 -0.0011 12 1 5.8658 -1.5456 0.8408 13 6 6.0062 -1.4989 -1.3084 14 6 7.5107 -1.2200 -1.3087 15 6 8.2741 -2.5399 -1.1833 16 6 7.8841 -3.2325 0.1241 17 6 6.3802 -3.5112 0.1246 18 1 6.1306 -4.1570 -0.7172 19 7 6.0067 -4.1743 1.3764 20 6 6.1244 -5.5120 1.4915 21 8 6.5400 -6.1684 0.5563 22 6 5.7473 -6.1806 2.7533 23 6 5.2627 -5.4169 3.8427 24 6 4.9184 -6.0417 4.9979 25 6 5.0501 -7.4409 5.0929 26 7 4.8050 -8.3152 6.0576 27 7 5.0886 -9.5049 5.6623 28 7 5.5252 -9.4934 4.4487 29 7 5.5214 -8.1569 4.0250 30 6 5.8604 -7.5375 2.8686 31 1 -0.4850 0.8402 0.0004 32 1 3.8646 -0.3622 -0.0007 33 1 3.8483 -3.0427 -0.8909 34 1 3.8490 -3.0425 0.8891 35 1 5.7568 -2.1448 -2.1503 36 1 5.4621 -0.5588 -1.3979 37 1 7.7886 -0.7270 -2.2403 38 1 7.7605 -0.5742 -0.4668 39 1 8.0242 -3.1856 -2.0251 40 1 9.3459 -2.3412 -1.1839 41 1 8.4284 -4.1726 0.2136 42 1 8.1340 -2.5868 0.9660 43 1 5.6748 -3.6507 2.1224 44 1 5.1667 -4.3447 3.7550 45 1 4.5470 -5.4712 5.8363 46 1 6.2264 -8.1186 2.0351 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569163388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:41 Heat of formation + Delta-G solvation = 115.287380 kcal Electronic energy + Delta-G solvation = -29740.488157 eV Core-core repulsion = 25668.130410 eV Total energy + Delta-G solvation = -4072.357747 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.84743 -40.81170 -39.22418 -38.09526 -34.96109 -34.91325 -34.28131 -32.67161 -32.05771 -31.03275 -30.17364 -29.64809 -26.17834 -25.42802 -24.86162 -23.34915 -23.06595 -22.38269 -21.20824 -20.82879 -20.21323 -19.19832 -18.14984 -17.97001 -17.49076 -17.32549 -16.41105 -15.58604 -15.44150 -15.42053 -14.78697 -14.59641 -14.43711 -14.14174 -14.11644 -13.92345 -13.61737 -13.38068 -13.11198 -12.94768 -12.84646 -12.74064 -12.33965 -12.18494 -12.12259 -11.85665 -11.49711 -11.39367 -11.18743 -11.09709 -10.92900 -10.75639 -10.64500 -10.51322 -10.34810 -10.23463 -10.12238 -9.67568 -9.30363 -9.12353 -8.98296 -7.33204 -5.85354 -3.21758 -0.36807 -0.04538 1.13165 1.51254 2.20416 2.68193 2.90379 3.15847 3.27645 3.30854 3.37848 3.59463 3.85545 4.01312 4.32342 4.36286 4.49955 4.52817 4.66013 4.76932 4.82576 4.97625 5.05790 5.09165 5.12188 5.20379 5.31031 5.37205 5.38744 5.43476 5.45763 5.47036 5.62674 5.68611 5.74981 5.87019 5.90266 5.99947 6.04105 6.10932 6.20118 6.30702 6.37171 6.49446 6.64310 7.09940 7.74820 7.90065 7.90639 8.33287 9.11971 9.83974 10.03111 11.32944 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010342 B = 0.002954 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.718800 B = 9476.578278 C =11581.935310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.089 0.911 9 N -0.754 5.754 10 C 0.162 3.838 11 C -0.105 4.105 12 H 0.076 0.924 13 C -0.109 4.109 14 C -0.123 4.123 15 C -0.115 4.115 16 C -0.127 4.127 17 C 0.155 3.845 18 H 0.095 0.905 19 N -0.707 5.707 20 C 0.573 3.427 21 O -0.528 6.528 22 C -0.148 4.148 23 C -0.032 4.032 24 C -0.090 4.090 25 C 0.252 3.748 26 N -0.322 5.322 27 N -0.003 5.003 28 N -0.104 5.104 29 N -0.306 5.306 30 C 0.179 3.821 31 H 0.260 0.740 32 H 0.361 0.639 33 H 0.028 0.972 34 H 0.025 0.975 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.403 0.597 44 H 0.164 0.836 45 H 0.176 0.824 46 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.444 -7.889 5.095 20.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.107 0.893 9 N -0.400 5.400 10 C 0.035 3.965 11 C -0.125 4.125 12 H 0.095 0.905 13 C -0.147 4.147 14 C -0.161 4.161 15 C -0.153 4.153 16 C -0.166 4.166 17 C 0.051 3.949 18 H 0.113 0.887 19 N -0.357 5.357 20 C 0.358 3.642 21 O -0.406 6.406 22 C -0.157 4.157 23 C -0.059 4.059 24 C -0.113 4.113 25 C -0.002 4.002 26 N -0.181 5.181 27 N 0.003 4.997 28 N -0.087 5.087 29 N -0.085 5.085 30 C 0.049 3.951 31 H 0.070 0.930 32 H 0.194 0.806 33 H 0.046 0.954 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.240 0.760 44 H 0.182 0.818 45 H 0.193 0.807 46 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 18.415 -9.978 5.129 21.563 hybrid contribution 0.329 2.235 -0.134 2.263 sum 18.743 -7.743 4.995 20.886 Atomic orbital electron populations 1.69702 1.05141 1.25891 1.57277 1.24680 0.95209 0.97199 1.01938 0.86569 0.79142 0.85052 0.77832 1.21033 1.21720 1.20359 1.19027 0.80604 0.94679 1.43329 0.89321 1.42700 1.04006 1.02075 1.91196 1.20651 0.87695 0.89385 0.98779 1.21675 0.96524 0.94904 0.99371 0.90541 1.21518 0.95022 1.01432 0.96732 1.21615 0.95552 0.97048 1.01842 1.21482 0.99637 0.96833 0.97359 1.21900 0.95283 1.00863 0.98511 1.21095 0.93968 0.93850 0.86013 0.88711 1.45945 1.65707 1.06328 1.17726 1.17427 0.78392 0.82600 0.85812 1.90843 1.45946 1.64529 1.39258 1.19749 1.06536 0.92204 0.97259 1.21516 0.92091 1.01849 0.90419 1.20363 1.02568 0.87633 1.00764 1.23152 0.95987 0.96269 0.84793 1.75210 1.25255 0.94279 1.23358 1.77901 1.04539 1.14258 1.02952 1.82893 1.26474 0.90795 1.08498 1.48831 1.39561 1.08236 1.11835 1.21727 0.93277 0.92855 0.87290 0.92984 0.80608 0.95395 0.95675 0.91440 0.90808 0.91896 0.92018 0.91658 0.91940 0.91500 0.91723 0.76046 0.81829 0.80680 0.78637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.30 13.97 55.49 0.78 -27.53 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 20.84 27.74 -169.99 -4.71 16.12 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.00 6.52 56.52 0.37 -5.63 16 7 C -0.25 -6.56 10.47 -15.06 -0.16 -6.71 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 9 N -0.75 -16.03 5.13 -59.91 -0.31 -16.33 16 10 C 0.16 2.66 5.57 -4.05 -0.02 2.64 16 11 C -0.11 -1.25 1.80 -90.62 -0.16 -1.42 16 12 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 13 C -0.11 -1.30 5.08 -26.73 -0.14 -1.43 16 14 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 15 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 16 C -0.13 -1.11 5.49 -26.75 -0.15 -1.26 16 17 C 0.15 1.56 1.90 -67.95 -0.13 1.43 16 18 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 19 N -0.71 -6.09 4.26 -54.82 -0.23 -6.32 16 20 C 0.57 5.45 7.73 -12.40 -0.10 5.36 16 21 O -0.53 -6.64 15.94 5.30 0.08 -6.56 16 22 C -0.15 -1.14 5.84 -105.33 -0.62 -1.75 16 23 C -0.03 -0.18 9.53 -39.18 -0.37 -0.56 16 24 C -0.09 -0.59 10.09 -39.47 -0.40 -0.99 16 25 C 0.25 2.60 8.02 -156.27 -1.25 1.34 16 26 N -0.32 -4.10 12.26 31.10 0.38 -3.72 16 27 N 0.00 -0.05 13.35 60.35 0.81 0.76 16 28 N -0.10 -1.32 13.99 60.35 0.84 -0.47 16 29 N -0.31 -3.23 3.92 -12.06 -0.05 -3.28 16 30 C 0.18 1.52 10.77 -16.51 -0.18 1.34 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.36 7.46 4.71 -40.82 -0.19 7.26 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.03 0.40 7.30 -51.92 -0.38 0.02 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.02 7.18 -51.93 -0.37 0.65 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.40 2.66 6.43 -40.82 -0.26 2.40 16 44 H 0.16 0.49 6.44 -52.49 -0.34 0.15 16 45 H 0.18 0.70 8.06 -52.49 -0.42 0.27 16 46 H 0.20 1.45 7.57 -52.49 -0.40 1.05 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -34.05 375.85 -6.98 -41.03 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.15 Total: 5.03 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -4.08 Total: -4.40 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: 2.22 Total: -56.89 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: 0.08 Total: -6.56 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.71 Total: 16.12 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.05 -6.98 -41.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569163388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.321 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds