Wall clock time and date at job start Wed Apr 1 2020 04:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 120.00492 * 2 1 4 4 H 1.48503 * 109.47082 * 270.00661 * 3 2 1 5 5 H 1.48501 * 109.46706 * 30.00352 * 3 2 1 6 6 H 1.48496 * 109.47078 * 150.00180 * 3 2 1 7 7 C 1.38813 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99950 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00408 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00458 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47484 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47153 * 55.00066 * 11 10 9 13 13 C 1.53002 * 109.46817 * 295.00296 * 11 10 9 14 14 C 1.53006 * 109.46711 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47445 * 59.99695 * 14 13 11 16 16 C 1.53002 * 109.47092 * 300.00075 * 15 14 13 17 17 C 1.53000 * 109.47060 * 175.00385 * 11 10 9 18 18 H 1.08992 * 109.47399 * 59.99823 * 17 11 10 19 19 N 1.46500 * 109.47023 * 299.99760 * 17 11 10 20 20 C 1.34777 * 120.00075 * 155.00453 * 19 17 11 21 21 O 1.21578 * 119.99640 * 359.97438 * 20 19 17 22 22 C 1.47693 * 120.00138 * 180.02562 * 20 19 17 23 23 C 1.41598 * 120.03167 * 359.97438 * 22 20 19 24 24 C 1.35779 * 119.54745 * 179.97438 * 23 22 20 25 25 C 1.40860 * 119.39124 * 0.02562 * 24 23 22 26 26 N 1.32487 * 133.41559 * 179.97438 * 25 24 23 27 27 N 1.28534 * 110.24298 * 179.97438 * 26 25 24 28 28 N 1.28982 * 110.84205 * 359.97438 * 27 26 25 29 29 N 1.36928 * 119.93371 * 359.97438 * 25 24 23 30 30 C 1.35498 * 120.84289 * 359.73849 * 29 25 24 31 31 H 0.97010 * 119.99490 * 359.97438 * 1 2 3 32 32 H 0.97005 * 119.99958 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.46667 * 60.00304 * 10 9 7 34 34 H 1.09008 * 109.47241 * 300.00661 * 10 9 7 35 35 H 1.09002 * 109.47075 * 299.99262 * 13 11 10 36 36 H 1.08996 * 109.47407 * 60.00219 * 13 11 10 37 37 H 1.09001 * 109.46726 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.46589 * 299.99365 * 14 13 11 39 39 H 1.09002 * 109.47045 * 59.99942 * 15 14 13 40 40 H 1.09000 * 109.47140 * 179.97438 * 15 14 13 41 41 H 1.09000 * 109.46497 * 180.02562 * 16 15 14 42 42 H 1.09002 * 109.47067 * 299.99853 * 16 15 14 43 43 H 0.97006 * 120.00223 * 335.00118 * 19 17 11 44 44 H 1.07999 * 120.22717 * 0.02562 * 23 22 20 45 45 H 1.07998 * 120.30411 * 180.02562 * 24 23 22 46 46 H 1.07997 * 119.83150 * 180.25866 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2023 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.6163 -2.1915 -0.0011 12 1 5.8658 -1.5456 0.8408 13 6 6.0062 -1.4989 -1.3084 14 6 7.5107 -1.2200 -1.3087 15 6 8.2741 -2.5399 -1.1833 16 6 7.8841 -3.2325 0.1241 17 6 6.3802 -3.5112 0.1246 18 1 6.1306 -4.1570 -0.7172 19 7 6.0067 -4.1743 1.3764 20 6 6.1244 -5.5120 1.4915 21 8 6.5400 -6.1684 0.5563 22 6 5.7473 -6.1806 2.7533 23 6 5.2627 -5.4169 3.8427 24 6 4.9184 -6.0417 4.9979 25 6 5.0501 -7.4409 5.0929 26 7 4.8050 -8.3152 6.0576 27 7 5.0886 -9.5049 5.6623 28 7 5.5252 -9.4934 4.4487 29 7 5.5214 -8.1569 4.0250 30 6 5.8604 -7.5375 2.8686 31 1 -0.4850 0.8402 0.0004 32 1 3.8646 -0.3622 -0.0007 33 1 3.8483 -3.0427 -0.8909 34 1 3.8490 -3.0425 0.8891 35 1 5.7568 -2.1448 -2.1503 36 1 5.4621 -0.5588 -1.3979 37 1 7.7886 -0.7270 -2.2403 38 1 7.7605 -0.5742 -0.4668 39 1 8.0242 -3.1856 -2.0251 40 1 9.3459 -2.3412 -1.1839 41 1 8.4284 -4.1726 0.2136 42 1 8.1340 -2.5868 0.9660 43 1 5.6748 -3.6507 2.1224 44 1 5.1667 -4.3447 3.7550 45 1 4.5470 -5.4712 5.8363 46 1 6.2264 -8.1186 2.0351 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569163388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:40 Heat of formation + Delta-G solvation = 92.012901 kcal Electronic energy + Delta-G solvation = -29741.497414 eV Core-core repulsion = 25668.130410 eV Total energy + Delta-G solvation = -4073.367004 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.65556 -41.61915 -40.04964 -38.94757 -36.52859 -35.69829 -35.05521 -33.80532 -33.43358 -31.77134 -31.56721 -30.49280 -27.28735 -26.53597 -25.55140 -24.41673 -24.12205 -23.45876 -22.08896 -21.93775 -21.00614 -20.03205 -19.70672 -18.65324 -18.58760 -18.15059 -17.23413 -16.63606 -16.35843 -16.18672 -16.09572 -15.81341 -15.43396 -15.15181 -14.80100 -14.76132 -14.65584 -14.58234 -14.38013 -14.09693 -13.83613 -13.63406 -13.62876 -13.02457 -12.93753 -12.83734 -12.74919 -12.62604 -12.36613 -12.14993 -12.08794 -11.88204 -11.80524 -11.58608 -11.39907 -11.34746 -11.18310 -11.04912 -10.90062 -10.10740 -9.84310 -9.24233 -7.98795 -5.32092 -1.10312 -0.67966 0.38380 0.67052 1.40878 1.45683 1.46286 1.53213 1.92456 2.20538 2.45174 2.52471 2.89048 3.23385 3.33424 3.38324 3.46082 3.64337 3.75917 3.81358 3.91955 3.98957 4.04011 4.29180 4.34208 4.39689 4.47332 4.50629 4.56060 4.60508 4.61385 4.62702 4.88494 4.92525 4.94200 5.05115 5.09401 5.15072 5.18400 5.27277 5.33704 5.35687 5.44972 5.48078 5.63400 5.80146 6.24777 6.38105 7.01843 7.04080 7.13086 7.88915 8.08317 9.22882 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010342 B = 0.002954 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.718800 B = 9476.578278 C =11581.935310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.066 4.066 3 Si 0.954 3.046 4 H -0.283 1.283 5 H -0.300 1.300 6 H -0.240 1.240 7 C -0.231 4.231 8 H 0.052 0.948 9 N -0.752 5.752 10 C 0.158 3.842 11 C -0.091 4.091 12 H 0.095 0.905 13 C -0.112 4.112 14 C -0.116 4.116 15 C -0.113 4.113 16 C -0.119 4.119 17 C 0.162 3.838 18 H 0.074 0.926 19 N -0.698 5.698 20 C 0.576 3.424 21 O -0.561 6.561 22 C -0.136 4.136 23 C -0.015 4.015 24 C -0.082 4.082 25 C 0.241 3.759 26 N -0.346 5.346 27 N -0.024 5.024 28 N -0.128 5.128 29 N -0.307 5.307 30 C 0.168 3.832 31 H 0.256 0.744 32 H 0.368 0.632 33 H 0.009 0.991 34 H 0.036 0.964 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.416 0.584 44 H 0.201 0.799 45 H 0.207 0.793 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.165 -5.503 5.805 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.257 4.257 3 Si 0.781 3.219 4 H -0.209 1.209 5 H -0.227 1.227 6 H -0.164 1.164 7 C -0.362 4.362 8 H 0.070 0.930 9 N -0.399 5.399 10 C 0.032 3.968 11 C -0.110 4.110 12 H 0.114 0.886 13 C -0.150 4.150 14 C -0.153 4.153 15 C -0.152 4.152 16 C -0.158 4.158 17 C 0.057 3.943 18 H 0.092 0.908 19 N -0.349 5.349 20 C 0.362 3.638 21 O -0.440 6.440 22 C -0.145 4.145 23 C -0.041 4.041 24 C -0.105 4.105 25 C -0.011 4.011 26 N -0.206 5.206 27 N -0.017 5.017 28 N -0.111 5.111 29 N -0.085 5.085 30 C 0.037 3.963 31 H 0.065 0.935 32 H 0.202 0.798 33 H 0.027 0.973 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.255 0.745 44 H 0.218 0.782 45 H 0.224 0.776 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 21.194 -7.609 5.854 23.267 hybrid contribution -0.552 1.465 -0.474 1.636 sum 20.642 -6.144 5.380 22.199 Atomic orbital electron populations 1.69901 1.07394 1.26640 1.59832 1.25532 0.96036 1.01404 1.02722 0.85427 0.79078 0.79400 0.77986 1.20916 1.22740 1.16370 1.18987 0.82957 0.93165 1.41091 0.93003 1.42652 1.02157 1.04186 1.90866 1.20827 0.90490 0.87271 0.98180 1.21533 0.93048 0.96190 1.00208 0.88636 1.21524 0.96987 1.00218 0.96317 1.21560 0.93321 0.97688 1.02741 1.21480 1.00531 0.96176 0.96966 1.21838 0.93500 1.01083 0.99336 1.20928 0.94973 0.92422 0.85994 0.90789 1.45840 1.65272 1.06115 1.17692 1.17554 0.77790 0.82644 0.85828 1.90843 1.47404 1.65237 1.40523 1.19669 1.05958 0.91790 0.97095 1.21889 0.90011 1.03292 0.88920 1.20819 1.01766 0.85878 1.02032 1.23674 0.95876 0.97399 0.84200 1.75093 1.26369 0.94496 1.24667 1.77851 1.05359 1.15058 1.03479 1.82797 1.27630 0.92206 1.08491 1.48787 1.39621 1.07725 1.12401 1.21905 0.93881 0.93474 0.86993 0.93477 0.79820 0.97333 0.94603 0.92529 0.92591 0.91321 0.90819 0.92465 0.90250 0.91920 0.89892 0.74490 0.78193 0.77575 0.78233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -61.23 13.97 21.65 0.30 -60.92 16 2 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 3 Si 0.95 42.11 27.74 68.60 1.90 44.02 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.24 -8.99 6.52 99.48 0.65 -8.34 16 7 C -0.23 -12.27 10.47 84.03 0.88 -11.39 16 8 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 9 N -0.75 -30.61 5.13 -343.46 -1.76 -32.37 16 10 C 0.16 4.91 5.57 86.38 0.48 5.39 16 11 C -0.09 -1.87 1.80 -10.79 -0.02 -1.89 16 12 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 13 C -0.11 -2.40 5.08 30.60 0.16 -2.25 16 14 C -0.12 -1.76 5.92 30.60 0.18 -1.58 16 15 C -0.11 -1.56 5.92 30.59 0.18 -1.37 16 16 C -0.12 -1.65 5.49 30.58 0.17 -1.48 16 17 C 0.16 2.81 1.90 44.98 0.09 2.90 16 18 H 0.07 1.66 7.58 -2.39 -0.02 1.64 16 19 N -0.70 -9.73 4.26 -445.63 -1.90 -11.62 16 20 C 0.58 9.65 7.73 86.74 0.67 10.33 16 21 O -0.56 -13.45 15.94 -3.96 -0.06 -13.51 16 22 C -0.14 -1.76 5.84 -20.32 -0.12 -1.88 16 23 C -0.02 -0.11 9.53 22.53 0.21 0.10 16 24 C -0.08 -0.83 10.09 22.34 0.23 -0.60 16 25 C 0.24 4.71 8.02 134.16 1.08 5.79 16 26 N -0.35 -8.83 12.26 -55.52 -0.68 -9.51 16 27 N -0.02 -0.69 13.35 37.02 0.49 -0.19 16 28 N -0.13 -3.36 13.99 37.02 0.52 -2.84 16 29 N -0.31 -6.41 3.92 -192.06 -0.75 -7.17 16 30 C 0.17 2.71 10.77 83.75 0.90 3.61 16 31 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 32 H 0.37 14.01 4.71 -92.70 -0.44 13.58 16 33 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.04 1.05 7.30 -2.38 -0.02 1.04 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 1.41 7.18 -2.39 -0.02 1.39 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.42 3.56 6.43 -92.70 -0.60 2.96 16 44 H 0.20 0.05 6.44 -2.91 -0.02 0.03 16 45 H 0.21 0.77 8.06 -2.91 -0.02 0.75 16 46 H 0.20 2.96 7.57 -2.91 -0.02 2.94 16 Total: -1.00 -77.61 375.85 3.55 -74.06 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -0.06 Total: 17.60 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 5.55 Total: 2.46 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -3.78 Total: -124.63 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.06 Total: -13.51 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.90 Total: 44.02 kcal Total: -77.61 3.55 -74.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569163388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.070 kcal (2) G-P(sol) polarization free energy of solvation -77.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds