Wall clock time and date at job start Wed Apr 1 2020 03:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46824 * 2 1 4 4 F 1.39892 * 109.47339 * 239.99979 * 2 1 3 5 5 C 1.53000 * 109.46846 * 119.99583 * 2 1 3 6 6 C 1.52997 * 109.47060 * 185.00166 * 5 2 1 7 7 N 1.46894 * 109.47515 * 180.02562 * 6 5 2 8 8 C 1.46833 * 110.99968 * 45.44525 * 7 6 5 9 9 C 1.53222 * 109.43866 * 187.83283 * 8 7 6 10 10 C 1.52703 * 109.01170 * 303.22906 * 9 8 7 11 11 C 1.53422 * 113.71836 * 185.09714 * 10 9 8 12 12 N 1.47678 * 85.96529 * 137.83112 * 11 10 9 13 13 C 1.34781 * 134.45019 * 155.73124 * 12 11 10 14 14 O 1.21281 * 119.99855 * 180.02562 * 13 12 11 15 15 C 1.50694 * 120.00066 * 359.97438 * 13 12 11 16 16 S 1.80994 * 109.47200 * 180.02562 * 15 13 12 17 17 C 1.76201 * 100.00026 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00087 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00023 * 179.97438 * 17 16 15 20 20 N 1.31632 * 119.99683 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00099 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.46929 * 89.99798 * 21 19 17 23 23 H 1.48490 * 109.47120 * 209.99609 * 21 19 17 24 24 H 1.48503 * 109.46979 * 330.00029 * 21 19 17 25 25 C 1.47675 * 91.09885 * 335.72729 * 12 11 10 26 26 C 1.52701 * 112.84848 * 53.66143 * 10 9 8 27 27 C 1.46835 * 111.00469 * 169.99742 * 7 6 5 28 28 H 1.09001 * 109.47241 * 299.99897 * 1 2 3 29 29 H 1.08996 * 109.46751 * 60.00260 * 1 2 3 30 30 H 1.09002 * 109.46824 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47398 * 305.00335 * 5 2 1 32 32 H 1.09001 * 109.47194 * 65.00515 * 5 2 1 33 33 H 1.09002 * 109.47153 * 300.00319 * 6 5 2 34 34 H 1.08998 * 109.47533 * 59.99948 * 6 5 2 35 35 H 1.09003 * 109.47431 * 307.82673 * 8 7 6 36 36 H 1.08998 * 109.47838 * 67.84401 * 8 7 6 37 37 H 1.08997 * 109.54808 * 183.36539 * 9 8 7 38 38 H 1.09004 * 109.62244 * 63.12967 * 9 8 7 39 39 H 1.08996 * 113.79257 * 252.09375 * 11 10 9 40 40 H 1.09002 * 113.78846 * 23.57183 * 11 10 9 41 41 H 1.09005 * 109.47165 * 300.00683 * 15 13 12 42 42 H 1.09002 * 109.47186 * 60.00121 * 15 13 12 43 43 H 0.97003 * 119.99758 * 180.02562 * 20 19 17 44 44 H 1.08998 * 113.79686 * 270.00865 * 25 12 11 45 45 H 1.09003 * 113.79305 * 138.52950 * 25 12 11 46 46 H 1.09004 * 109.54771 * 186.47733 * 26 10 9 47 47 H 1.09005 * 109.54951 * 66.19750 * 26 10 9 48 48 H 1.08993 * 109.47432 * 292.16087 * 27 7 6 49 49 H 1.09006 * 109.47253 * 52.18402 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0400 -0.7212 1.2493 6 6 3.5648 -0.6132 1.3138 7 7 4.0545 -1.3061 2.5129 8 6 3.4070 -2.6150 2.6656 9 6 3.7925 -3.2198 4.0197 10 6 5.3142 -3.3110 4.1086 11 6 5.8171 -4.0174 5.3743 12 7 6.7899 -4.6873 4.4879 13 6 7.9986 -5.2549 4.6709 14 8 8.5878 -5.7433 3.7300 15 6 8.6184 -5.2816 6.0442 16 16 10.2287 -6.1040 5.9635 17 6 10.7116 -5.9975 7.6547 18 1 10.0601 -5.5231 8.3736 19 6 11.9295 -6.5235 8.0631 20 7 12.2905 -6.4435 9.3264 21 14 13.0568 -7.3436 6.8197 22 1 13.9721 -6.3295 6.2371 23 1 13.8532 -8.3996 7.4946 24 1 12.2412 -7.9533 5.7388 25 6 5.9079 -4.4862 3.3207 26 6 6.0052 -1.9773 3.8341 27 6 5.5174 -1.4300 2.4886 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6053 -0.2616 2.1370 32 1 1.7517 -1.7715 1.2057 33 1 3.9995 -1.0727 0.4261 34 1 3.8532 0.4370 1.3574 35 1 2.3249 -2.4931 2.6168 36 1 3.7345 -3.2782 1.8650 37 1 3.3614 -4.2168 4.1098 38 1 3.4175 -2.5863 4.8236 39 1 6.2741 -3.3455 6.1007 40 1 5.0881 -4.6949 5.8188 41 1 8.7496 -4.2609 6.4035 42 1 7.9658 -5.8260 6.7268 43 1 13.1418 -6.8107 9.6118 44 1 5.2059 -5.3032 3.1539 45 1 6.4370 -4.1865 2.4160 46 1 7.0844 -2.1263 3.7975 47 1 5.7601 -1.2696 4.6261 48 1 5.8111 -2.1121 1.6908 49 1 5.9622 -0.4507 2.3118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570049669.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:38 Heat of formation + Delta-G solvation = -57.992071 kcal Electronic energy + Delta-G solvation = -27729.191446 eV Core-core repulsion = 23732.550977 eV Total energy + Delta-G solvation = -3996.640469 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.06942 -41.11104 -38.79906 -37.42063 -34.67641 -32.44242 -32.36154 -31.38870 -30.10332 -28.82714 -26.77631 -26.18216 -25.54720 -24.03024 -23.54321 -22.05476 -21.03505 -19.41276 -18.52115 -17.67739 -17.17754 -16.83595 -16.39030 -16.03490 -15.77960 -15.50689 -15.24401 -15.14194 -14.93316 -14.67407 -14.42555 -14.25106 -13.83376 -13.44453 -13.34939 -13.16540 -12.95259 -12.84155 -12.79784 -12.72667 -12.47015 -12.20277 -12.06268 -11.89210 -11.69437 -11.45172 -11.32610 -11.25320 -11.11684 -11.00419 -10.82908 -10.63634 -10.56402 -10.54057 -9.84507 -9.41190 -8.99962 -8.68982 -8.58980 -8.49097 -6.91587 -6.28544 -4.00258 2.61629 2.97343 3.14291 3.33534 3.38722 3.51178 3.58382 3.98377 4.04277 4.18014 4.24368 4.33028 4.36536 4.41617 4.44797 4.59242 4.69554 4.78210 4.79235 4.91159 5.03381 5.04886 5.07495 5.09828 5.10601 5.21087 5.25518 5.28972 5.29912 5.36279 5.39072 5.44224 5.46008 5.51290 5.57793 5.61756 5.68022 5.72053 5.77199 5.81939 5.91781 6.01244 6.03126 6.06297 6.68028 6.72118 7.79375 7.94567 8.41924 8.46529 9.17692 10.80647 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.034483 B = 0.001781 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.793636 B =15717.115375 C =15941.422458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.087 3.913 3 H 0.083 0.917 4 F -0.215 7.215 5 C -0.151 4.151 6 C 0.053 3.947 7 N -0.537 5.537 8 C 0.049 3.951 9 C -0.099 4.099 10 C -0.093 4.093 11 C 0.111 3.889 12 N -0.647 5.647 13 C 0.553 3.447 14 O -0.520 6.520 15 C -0.115 4.115 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.236 1.236 25 C 0.116 3.884 26 C -0.089 4.089 27 C 0.058 3.942 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.035 0.965 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.271 0.729 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.036 0.964 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.761 14.844 -15.225 34.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.051 3.949 3 H 0.101 0.899 4 F -0.196 7.196 5 C -0.189 4.189 6 C -0.074 4.074 7 N -0.261 5.261 8 C -0.079 4.079 9 C -0.138 4.138 10 C -0.094 4.094 11 C -0.012 4.012 12 N -0.385 5.385 13 C 0.342 3.658 14 O -0.395 6.395 15 C -0.266 4.266 16 S 0.083 5.917 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.112 4.112 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.007 4.007 26 C -0.127 4.127 27 C -0.070 4.070 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.081 0.919 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.097 0.903 48 H 0.054 0.946 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -25.622 14.233 -16.061 33.423 hybrid contribution 0.208 -0.380 0.161 0.462 sum -25.415 13.853 -15.900 33.025 Atomic orbital electron populations 1.22372 0.94181 1.03661 1.03532 1.21570 0.94891 0.96351 0.82136 0.89854 1.92825 1.90279 1.83393 1.53139 1.22412 0.96325 1.02279 0.97875 1.22097 0.94188 0.99690 0.91450 1.61916 1.05935 1.20217 1.38080 1.22246 0.99481 0.89218 0.96954 1.21505 0.93456 1.01051 0.97767 1.22144 0.95627 0.95187 0.96417 1.23226 0.89717 0.94003 0.94265 1.49989 1.16666 1.60020 1.11848 1.20001 0.79211 0.75900 0.90642 1.90703 1.61022 1.44571 1.43184 1.23209 1.02089 1.05392 0.95882 1.84787 1.16138 1.75537 1.15225 1.22310 1.08168 1.44891 0.91468 0.89399 1.24704 0.96806 0.94537 0.95201 1.69941 1.22442 1.44333 1.14957 0.86737 0.82086 0.80489 0.82563 1.19196 1.19911 1.15948 1.23145 0.90705 0.95456 0.91379 1.21312 0.99720 0.94324 0.97356 1.22092 0.87006 1.00741 0.97140 0.90539 0.91416 0.91396 0.89080 0.90225 0.94255 0.90465 0.90012 0.94695 0.90912 0.90279 0.89706 0.89620 0.88686 0.88678 0.91949 0.90188 0.90516 0.90682 0.90259 0.94579 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.65 9.65 37.16 0.36 -0.29 16 2 C 0.09 0.43 3.96 -26.73 -0.11 0.33 16 3 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 4 F -0.22 -1.78 16.76 2.25 0.04 -1.74 16 5 C -0.15 -0.73 4.23 -26.73 -0.11 -0.84 16 6 C 0.05 0.34 5.18 -3.83 -0.02 0.32 16 7 N -0.54 -3.84 4.76 -234.46 -1.12 -4.95 16 8 C 0.05 0.32 4.86 -3.75 -0.02 0.30 16 9 C -0.10 -0.64 5.29 -26.77 -0.14 -0.78 16 10 C -0.09 -0.78 0.79 -154.47 -0.12 -0.91 16 11 C 0.11 1.09 7.75 -3.19 -0.02 1.07 16 12 N -0.65 -9.10 3.46 -180.58 -0.62 -9.73 16 13 C 0.55 10.59 8.07 -10.99 -0.09 10.50 16 14 O -0.52 -12.00 16.59 5.56 0.09 -11.91 16 15 C -0.12 -2.35 5.90 36.00 0.21 -2.13 16 16 S -0.14 -3.73 18.55 -107.50 -1.99 -5.73 16 17 C -0.52 -15.22 10.04 30.94 0.31 -14.91 16 18 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 19 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 20 N -0.88 -26.72 13.97 55.49 0.78 -25.95 16 21 Si 0.86 22.05 27.74 -169.99 -4.72 17.33 16 22 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.24 -6.08 6.74 56.52 0.38 -5.70 16 25 C 0.12 1.28 7.73 -3.18 -0.02 1.26 16 26 C -0.09 -0.78 5.22 -26.77 -0.14 -0.92 16 27 C 0.06 0.46 5.38 -3.75 -0.02 0.44 16 28 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.41 6.17 -51.93 -0.32 0.09 16 33 H 0.04 0.30 7.87 -51.93 -0.41 -0.11 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.44 5.69 -51.93 -0.30 0.14 16 36 H 0.03 0.26 8.09 -51.93 -0.42 -0.16 16 37 H 0.07 0.41 8.04 -51.93 -0.42 -0.01 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 40 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 41 H 0.09 1.81 8.14 -51.91 -0.42 1.39 16 42 H 0.09 1.82 8.14 -51.92 -0.42 1.40 16 43 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.08 0.79 8.02 -51.93 -0.42 0.38 16 45 H 0.08 0.92 7.66 -51.93 -0.40 0.52 16 46 H 0.07 0.79 8.01 -51.93 -0.42 0.38 16 47 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.04 0.32 7.68 -51.93 -0.40 -0.08 16 49 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 LS Contribution 401.62 15.07 6.05 6.05 Total: -1.00 -34.89 401.62 -10.08 -44.97 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -8.56 Total: -4.53 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -0.03 Total: -3.82 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: -0.97 Total: -40.62 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.72 Total: 17.33 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -1.99 Total: -5.73 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.89 -10.08 -44.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570049669.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.025 kcal (2) G-P(sol) polarization free energy of solvation -34.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds