Wall clock time and date at job start Wed Apr 1 2020 04:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00021 * 2 1 4 4 H 1.48500 * 109.47196 * 269.99762 * 3 2 1 5 5 H 1.48497 * 109.47041 * 29.99963 * 3 2 1 6 6 H 1.48497 * 109.47130 * 149.99684 * 3 2 1 7 7 C 1.37876 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00375 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00194 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47284 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46794 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.46909 * 185.13732 * 11 10 9 13 13 C 1.47900 * 110.99876 * 184.29110 * 12 11 10 14 14 C 1.53994 * 107.05827 * 145.85038 * 13 12 11 15 15 C 1.54599 * 105.14099 * 358.76898 * 14 13 12 16 16 H 1.09003 * 110.72245 * 96.57771 * 15 14 13 17 17 O 1.42894 * 110.72973 * 219.68976 * 15 14 13 18 18 C 1.35657 * 117.00126 * 268.54827 * 17 15 14 19 19 C 1.39005 * 119.55931 * 179.97438 * 18 17 15 20 20 C 1.38152 * 119.23036 * 179.97438 * 19 18 17 21 21 C 1.39882 * 118.38512 * 0.02562 * 20 19 18 22 22 C 1.48447 * 120.47232 * 179.97438 * 21 20 19 23 23 N 1.34052 * 126.67311 * 359.68033 * 22 21 20 24 24 N 1.28982 * 107.26377 * 179.89339 * 23 22 21 25 25 N 1.28727 * 108.94885 * 0.38321 * 24 23 22 26 26 H 0.97007 * 125.34173 * 179.79708 * 25 24 23 27 27 N 1.28874 * 109.31895 * 359.75594 * 25 24 23 28 28 C 1.39144 * 119.05913 * 0.02562 * 21 20 19 29 29 N 1.31823 * 120.67057 * 359.74026 * 28 21 20 30 30 C 1.48531 * 111.00234 * 301.68759 * 12 11 10 31 31 H 0.96998 * 120.00000 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.46806 * 60.00326 * 9 7 2 33 33 H 1.09005 * 109.46900 * 300.00528 * 9 7 2 34 34 H 1.08992 * 109.47312 * 59.99900 * 10 9 7 35 35 H 1.09001 * 109.46830 * 299.99932 * 10 9 7 36 36 H 1.09003 * 109.47159 * 65.14660 * 11 10 9 37 37 H 1.08998 * 109.47270 * 305.13956 * 11 10 9 38 38 H 1.08991 * 109.91801 * 26.49115 * 13 12 11 39 39 H 1.09008 * 110.08048 * 265.28581 * 13 12 11 40 40 H 1.09005 * 110.30593 * 239.86192 * 14 13 12 41 41 H 1.08997 * 110.39750 * 117.73321 * 14 13 12 42 42 H 1.07995 * 120.38508 * 359.95519 * 19 18 17 43 43 H 1.08001 * 120.81152 * 179.97438 * 20 19 18 44 44 H 1.07998 * 119.66559 * 179.97438 * 28 21 20 45 45 H 1.09006 * 110.66983 * 81.84222 * 30 12 11 46 46 H 1.09001 * 110.66753 * 318.71407 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5516 -2.6365 0.0001 12 7 6.0412 -4.0160 -0.1238 13 6 7.5161 -4.0658 -0.0245 14 6 7.8769 -5.3850 0.6834 15 6 6.5211 -6.0557 1.0030 16 1 6.2623 -6.7867 0.2369 17 8 6.5515 -6.6678 2.2938 18 6 6.9276 -7.9700 2.3492 19 6 6.9762 -8.6180 3.5780 20 6 7.3596 -9.9444 3.6265 21 6 7.6864 -10.5864 2.4274 22 6 8.1048 -12.0107 2.4259 23 7 8.2231 -12.8116 3.4943 24 7 8.6067 -13.9664 3.0665 25 7 8.7387 -13.9154 1.7871 26 1 9.0199 -14.6522 1.2222 27 7 8.4380 -12.7322 1.3742 28 6 7.6147 -9.8708 1.2363 29 7 7.2396 -8.6071 1.2326 30 6 5.5319 -4.8633 0.9848 31 1 -0.4850 0.8400 -0.0004 32 1 3.8752 -0.6797 0.8895 33 1 3.8745 -0.6808 -0.8905 34 1 3.6579 -3.1506 -0.8896 35 1 3.6585 -3.1502 0.8903 36 1 5.9149 -2.2045 0.9326 37 1 5.9149 -2.0451 -0.8403 38 1 7.8776 -3.2198 0.5599 39 1 7.9591 -4.0456 -1.0202 40 1 8.4251 -5.1828 1.6036 41 1 8.4674 -6.0208 0.0238 42 1 6.7177 -8.0907 4.4843 43 1 7.4067 -10.4726 4.5674 44 1 7.8652 -10.3567 0.3049 45 1 4.5194 -5.2067 0.7727 46 1 5.5653 -4.3212 1.9299 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592674477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:31 Heat of formation + Delta-G solvation = 127.304651 kcal Electronic energy + Delta-G solvation = -28093.013642 eV Core-core repulsion = 24021.177004 eV Total energy + Delta-G solvation = -4071.836639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.91508 -41.09255 -39.36968 -37.62399 -34.93738 -34.32754 -34.02779 -32.84635 -32.26540 -30.79723 -29.99574 -28.70464 -26.46403 -25.50150 -25.00030 -23.99456 -22.79915 -22.48035 -21.21700 -20.86832 -19.79990 -19.66222 -18.78171 -17.60562 -17.20468 -16.97770 -16.65863 -16.25025 -15.48688 -15.31287 -15.02679 -14.52446 -14.33755 -14.16028 -13.93349 -13.75631 -13.48548 -13.32145 -13.01988 -12.96643 -12.72010 -12.63826 -12.36362 -11.89055 -11.68349 -11.63066 -11.60913 -11.58602 -11.41209 -10.96608 -10.79297 -10.74782 -10.66124 -10.28635 -10.03091 -9.89921 -9.72096 -9.56594 -9.14933 -8.76490 -8.51132 -8.33662 -6.01492 -3.99213 0.18874 0.70184 0.77722 1.76814 1.87855 2.60918 3.18689 3.32451 3.35620 3.39623 3.43137 3.67772 3.81231 4.16343 4.38610 4.47314 4.47574 4.55346 4.64518 4.72480 4.80151 4.92303 4.99697 5.19909 5.27020 5.32397 5.35150 5.43692 5.55839 5.59958 5.66106 5.68418 5.72288 5.75655 5.89477 5.93038 5.99058 6.03641 6.14522 6.48666 6.57711 6.81167 6.93957 7.04387 7.17245 7.34206 7.38820 7.47720 7.67065 7.82632 8.57513 9.03946 9.61111 11.12066 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.026744 B = 0.001572 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.697336 B =17803.245822 C =18212.251725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.101 4.101 11 C 0.046 3.954 12 N -0.511 5.511 13 C 0.036 3.964 14 C -0.145 4.145 15 C 0.085 3.915 16 H 0.107 0.893 17 O -0.290 6.290 18 C 0.349 3.651 19 C -0.192 4.192 20 C 0.003 3.997 21 C -0.120 4.120 22 C 0.233 3.767 23 N -0.271 5.271 24 N -0.047 5.047 25 N -0.226 5.226 26 H 0.476 0.524 27 N -0.296 5.296 28 C 0.190 3.810 29 N -0.535 5.535 30 C 0.042 3.958 31 H 0.262 0.738 32 H 0.013 0.987 33 H 0.012 0.988 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.032 0.968 37 H 0.075 0.925 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.152 0.848 43 H 0.154 0.846 44 H 0.169 0.831 45 H 0.096 0.904 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.586 -26.774 4.760 35.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.139 4.139 11 C -0.081 4.081 12 N -0.237 5.237 13 C -0.092 4.092 14 C -0.184 4.184 15 C 0.028 3.972 16 H 0.124 0.876 17 O -0.195 6.195 18 C 0.170 3.830 19 C -0.213 4.213 20 C -0.024 4.024 21 C -0.127 4.127 22 C -0.047 4.047 23 N -0.144 5.144 24 N -0.043 5.043 25 N -0.072 5.072 26 H 0.331 0.669 27 N -0.148 5.148 28 C 0.030 3.970 29 N -0.258 5.258 30 C -0.086 4.086 31 H 0.072 0.928 32 H 0.032 0.968 33 H 0.030 0.970 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.170 0.830 43 H 0.171 0.829 44 H 0.186 0.814 45 H 0.114 0.886 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 22.258 -26.726 3.969 35.006 hybrid contribution 0.813 0.715 0.754 1.320 sum 23.071 -26.010 4.723 35.087 Atomic orbital electron populations 1.69919 1.06292 1.26813 1.51327 1.25038 0.94730 0.99156 0.94641 0.86767 0.80311 0.83651 0.78472 1.20305 1.21444 1.19100 1.21146 0.89502 0.94461 1.50559 0.91028 1.19549 0.97199 0.92211 0.96127 1.21510 0.90766 0.99893 1.01700 1.22536 0.98261 0.87189 1.00152 1.64829 1.05523 1.11472 1.41836 1.22814 0.89611 0.96105 1.00648 1.22837 0.97263 0.97046 1.01227 1.23432 0.96064 0.94889 0.82827 0.87557 1.86311 1.80150 1.19716 1.33372 1.20081 0.88233 0.84943 0.89764 1.21063 1.07817 0.94898 0.97536 1.21411 0.90212 0.92754 0.98017 1.18013 1.10835 0.87872 0.95930 1.23349 1.00478 0.96277 0.84616 1.76087 1.16637 0.96223 1.25452 1.78922 1.13790 1.17355 0.94190 1.47724 1.42842 1.10313 1.06352 0.66912 1.74927 1.19904 0.93306 1.26625 1.22519 0.89624 0.87690 0.97135 1.67448 1.18024 1.10873 1.29486 1.23216 0.98585 0.92420 0.94374 0.92794 0.96846 0.97002 0.91771 0.92839 0.94967 0.90645 0.93468 0.90061 0.90832 0.90229 0.83022 0.82853 0.81414 0.88576 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.92 27.47 -169.99 -4.67 17.26 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -14.98 9.66 -34.44 -0.33 -15.31 16 8 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.10 -2.00 4.83 -26.73 -0.13 -2.13 16 11 C 0.05 0.75 4.84 -3.82 -0.02 0.73 16 12 N -0.51 -7.37 5.35 -230.45 -1.23 -8.60 16 13 C 0.04 0.43 6.70 -2.76 -0.02 0.41 16 14 C -0.15 -1.55 6.69 -25.37 -0.17 -1.72 16 15 C 0.08 1.00 3.25 -24.87 -0.08 0.92 16 16 H 0.11 1.31 7.12 -51.93 -0.37 0.94 16 17 O -0.29 -3.41 9.85 -18.67 -0.18 -3.60 16 18 C 0.35 3.66 7.49 -17.07 -0.13 3.53 16 19 C -0.19 -1.59 10.03 -39.33 -0.39 -1.98 16 20 C 0.00 0.02 9.83 -39.00 -0.38 -0.36 16 21 C -0.12 -0.98 5.89 -104.74 -0.62 -1.60 16 22 C 0.23 1.95 7.95 -156.30 -1.24 0.71 16 23 N -0.27 -2.44 12.30 32.15 0.40 -2.05 16 24 N -0.05 -0.35 13.47 60.35 0.81 0.46 16 25 N -0.23 -1.06 7.90 60.35 0.48 -0.58 16 26 H 0.48 -0.03 8.96 -340.36 -3.05 -3.09 16 27 N -0.30 -2.06 12.10 32.17 0.39 -1.67 16 28 C 0.19 1.61 10.86 -17.22 -0.19 1.42 16 29 N -0.54 -5.52 8.68 -13.06 -0.11 -5.63 16 30 C 0.04 0.57 5.09 -1.90 -0.01 0.56 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 33 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.05 1.06 7.18 -51.93 -0.37 0.69 16 36 H 0.03 0.51 7.97 -51.93 -0.41 0.10 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 39 H 0.08 0.89 8.14 -51.92 -0.42 0.46 16 40 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.15 0.88 7.96 -52.49 -0.42 0.47 16 44 H 0.17 1.12 7.89 -52.49 -0.41 0.71 16 45 H 0.10 1.36 7.77 -51.93 -0.40 0.96 16 46 H 0.06 0.82 8.02 -51.93 -0.42 0.40 16 LS Contribution 384.75 15.07 5.80 5.80 Total: -1.00 -34.22 384.75 -10.62 -44.84 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -9.14 Total: -5.38 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -3.92 Total: -13.43 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 1.50 Total: -45.50 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: -0.18 Total: -3.60 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.22 -10.62 -44.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592674477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.148 kcal (2) G-P(sol) polarization free energy of solvation -34.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds