Wall clock time and date at job start Wed Apr 1 2020 04:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00021 * 2 1 4 4 H 1.48500 * 109.47196 * 269.99762 * 3 2 1 5 5 H 1.48497 * 109.47041 * 29.99963 * 3 2 1 6 6 H 1.48497 * 109.47130 * 149.99684 * 3 2 1 7 7 C 1.37876 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00375 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00194 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47284 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46794 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.46909 * 185.13732 * 11 10 9 13 13 C 1.47900 * 110.99876 * 184.29110 * 12 11 10 14 14 C 1.53994 * 107.05827 * 145.85038 * 13 12 11 15 15 C 1.54599 * 105.14099 * 358.76898 * 14 13 12 16 16 H 1.09003 * 110.72245 * 96.57771 * 15 14 13 17 17 O 1.42894 * 110.72973 * 219.68976 * 15 14 13 18 18 C 1.35657 * 117.00126 * 268.54827 * 17 15 14 19 19 C 1.39005 * 119.55931 * 179.97438 * 18 17 15 20 20 C 1.38152 * 119.23036 * 179.97438 * 19 18 17 21 21 C 1.39882 * 118.38512 * 0.02562 * 20 19 18 22 22 C 1.48447 * 120.47232 * 179.97438 * 21 20 19 23 23 N 1.34052 * 126.67311 * 359.68033 * 22 21 20 24 24 N 1.28982 * 107.26377 * 179.89339 * 23 22 21 25 25 N 1.28727 * 108.94885 * 0.38321 * 24 23 22 26 26 H 0.97007 * 125.34173 * 179.79708 * 25 24 23 27 27 N 1.28874 * 109.31895 * 359.75594 * 25 24 23 28 28 C 1.39144 * 119.05913 * 0.02562 * 21 20 19 29 29 N 1.31823 * 120.67057 * 359.74026 * 28 21 20 30 30 C 1.48531 * 111.00234 * 301.68759 * 12 11 10 31 31 H 0.96998 * 120.00000 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.46806 * 60.00326 * 9 7 2 33 33 H 1.09005 * 109.46900 * 300.00528 * 9 7 2 34 34 H 1.08992 * 109.47312 * 59.99900 * 10 9 7 35 35 H 1.09001 * 109.46830 * 299.99932 * 10 9 7 36 36 H 1.09003 * 109.47159 * 65.14660 * 11 10 9 37 37 H 1.08998 * 109.47270 * 305.13956 * 11 10 9 38 38 H 1.08991 * 109.91801 * 26.49115 * 13 12 11 39 39 H 1.09008 * 110.08048 * 265.28581 * 13 12 11 40 40 H 1.09005 * 110.30593 * 239.86192 * 14 13 12 41 41 H 1.08997 * 110.39750 * 117.73321 * 14 13 12 42 42 H 1.07995 * 120.38508 * 359.95519 * 19 18 17 43 43 H 1.08001 * 120.81152 * 179.97438 * 20 19 18 44 44 H 1.07998 * 119.66559 * 179.97438 * 28 21 20 45 45 H 1.09006 * 110.66983 * 81.84222 * 30 12 11 46 46 H 1.09001 * 110.66753 * 318.71407 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5516 -2.6365 0.0001 12 7 6.0412 -4.0160 -0.1238 13 6 7.5161 -4.0658 -0.0245 14 6 7.8769 -5.3850 0.6834 15 6 6.5211 -6.0557 1.0030 16 1 6.2623 -6.7867 0.2369 17 8 6.5515 -6.6678 2.2938 18 6 6.9276 -7.9700 2.3492 19 6 6.9762 -8.6180 3.5780 20 6 7.3596 -9.9444 3.6265 21 6 7.6864 -10.5864 2.4274 22 6 8.1048 -12.0107 2.4259 23 7 8.2231 -12.8116 3.4943 24 7 8.6067 -13.9664 3.0665 25 7 8.7387 -13.9154 1.7871 26 1 9.0199 -14.6522 1.2222 27 7 8.4380 -12.7322 1.3742 28 6 7.6147 -9.8708 1.2363 29 7 7.2396 -8.6071 1.2326 30 6 5.5319 -4.8633 0.9848 31 1 -0.4850 0.8400 -0.0004 32 1 3.8752 -0.6797 0.8895 33 1 3.8745 -0.6808 -0.8905 34 1 3.6579 -3.1506 -0.8896 35 1 3.6585 -3.1502 0.8903 36 1 5.9149 -2.2045 0.9326 37 1 5.9149 -2.0451 -0.8403 38 1 7.8776 -3.2198 0.5599 39 1 7.9591 -4.0456 -1.0202 40 1 8.4251 -5.1828 1.6036 41 1 8.4674 -6.0208 0.0238 42 1 6.7177 -8.0907 4.4843 43 1 7.4067 -10.4726 4.5674 44 1 7.8652 -10.3567 0.3049 45 1 4.5194 -5.2067 0.7727 46 1 5.5653 -4.3212 1.9299 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592674477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:31 Heat of formation + Delta-G solvation = 101.537186 kcal Electronic energy + Delta-G solvation = -28094.131004 eV Core-core repulsion = 24021.177004 eV Total energy + Delta-G solvation = -4072.954000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.46214 -41.82788 -40.28985 -38.56144 -36.02257 -35.48647 -34.69165 -34.15593 -33.45132 -31.88103 -31.09102 -29.65667 -28.13840 -26.08842 -25.68719 -24.84295 -24.14568 -23.13014 -22.47313 -21.89742 -21.27210 -20.21122 -19.59343 -18.86754 -18.14539 -17.95161 -17.56756 -17.21350 -16.50965 -16.32727 -16.07790 -15.93597 -15.46835 -15.09752 -14.99861 -14.73590 -14.46976 -14.34510 -14.19323 -14.11243 -13.83637 -13.62737 -13.33282 -13.25310 -12.91375 -12.76540 -12.49072 -12.40908 -12.36188 -12.27005 -12.18867 -11.76019 -11.67653 -11.61384 -11.47329 -11.40836 -11.23430 -10.90704 -10.74949 -10.73082 -9.45223 -9.44874 -8.28068 -6.32519 -0.44578 0.13006 0.17293 1.24155 1.37298 1.39354 1.41915 1.51443 1.80397 2.37804 2.60884 2.69254 2.98725 3.07239 3.10484 3.23759 3.51517 3.62573 3.79205 3.95882 4.02607 4.13268 4.14290 4.20586 4.25391 4.29151 4.42115 4.47983 4.60534 4.66816 4.69191 4.75309 4.80752 4.86899 4.91951 4.92995 5.02109 5.05332 5.06528 5.15538 5.31840 5.51171 5.59318 5.61373 5.66963 5.84555 6.00126 6.17813 6.30906 6.69485 6.75628 7.11181 7.32021 8.88958 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.026744 B = 0.001572 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.697336 B =17803.245822 C =18212.251725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.245 1.245 7 C -0.534 4.534 8 H 0.028 0.972 9 C -0.010 4.010 10 C -0.092 4.092 11 C 0.058 3.942 12 N -0.522 5.522 13 C 0.037 3.963 14 C -0.135 4.135 15 C 0.092 3.908 16 H 0.099 0.901 17 O -0.302 6.302 18 C 0.327 3.673 19 C -0.189 4.189 20 C 0.008 3.992 21 C -0.118 4.118 22 C 0.222 3.778 23 N -0.292 5.292 24 N -0.056 5.056 25 N -0.199 5.199 26 H 0.495 0.505 27 N -0.295 5.295 28 C 0.185 3.815 29 N -0.551 5.551 30 C 0.040 3.960 31 H 0.266 0.734 32 H 0.020 0.980 33 H 0.022 0.978 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.040 0.960 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.167 0.833 43 H 0.171 0.829 44 H 0.183 0.817 45 H 0.080 0.920 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.493 -26.965 4.856 37.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.572 4.572 8 H 0.046 0.954 9 C -0.047 4.047 10 C -0.130 4.130 11 C -0.070 4.070 12 N -0.247 5.247 13 C -0.091 4.091 14 C -0.173 4.173 15 C 0.035 3.965 16 H 0.117 0.883 17 O -0.208 6.208 18 C 0.148 3.852 19 C -0.210 4.210 20 C -0.019 4.019 21 C -0.124 4.124 22 C -0.059 4.059 23 N -0.165 5.165 24 N -0.051 5.051 25 N -0.050 5.050 26 H 0.354 0.646 27 N -0.148 5.148 28 C 0.026 3.974 29 N -0.273 5.273 30 C -0.088 4.088 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.185 0.815 43 H 0.188 0.812 44 H 0.200 0.800 45 H 0.099 0.901 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 25.194 -26.969 4.061 37.129 hybrid contribution -0.140 0.538 0.701 0.895 sum 25.054 -26.431 4.762 36.729 Atomic orbital electron populations 1.70083 1.08404 1.28160 1.52741 1.26077 0.95662 1.03719 0.94055 0.85590 0.79484 0.77876 0.79273 1.19039 1.21026 1.16795 1.21519 0.92323 0.93016 1.50387 0.95385 1.19492 0.93748 0.94891 0.96615 1.21320 0.93803 0.97151 1.00690 1.22301 0.95129 0.88648 1.00922 1.64765 1.07476 1.10266 1.42203 1.22893 0.87586 0.96892 1.01693 1.22773 0.96562 0.96472 1.01543 1.23217 0.96162 0.94062 0.83015 0.88286 1.86273 1.80876 1.20659 1.32982 1.20309 0.89608 0.84633 0.90667 1.21252 1.07209 0.95135 0.97369 1.21615 0.89327 0.92401 0.98565 1.18107 1.10178 0.87969 0.96112 1.23373 1.01201 0.96428 0.84853 1.76065 1.17542 0.96734 1.26110 1.78872 1.14175 1.16963 0.95065 1.47793 1.40969 1.10290 1.05978 0.64602 1.74898 1.19693 0.93839 1.26368 1.22729 0.89523 0.87212 0.97925 1.67401 1.18510 1.11671 1.29766 1.23154 0.98529 0.93214 0.93885 0.92534 0.96150 0.95999 0.93158 0.93665 0.94224 0.89761 0.92736 0.88830 0.90288 0.89209 0.81511 0.81157 0.80035 0.90115 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 2 C 0.00 0.07 5.47 84.65 0.46 0.54 16 3 Si 0.95 44.68 27.47 68.60 1.88 46.57 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.24 -10.52 6.54 99.48 0.65 -9.87 16 7 C -0.53 -31.67 9.66 25.60 0.25 -31.42 16 8 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 9 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 10 C -0.09 -3.66 4.83 30.59 0.15 -3.51 16 11 C 0.06 1.80 4.84 86.30 0.42 2.21 16 12 N -0.52 -14.47 5.35 -883.00 -4.73 -19.20 16 13 C 0.04 0.79 6.70 86.45 0.58 1.37 16 14 C -0.14 -2.66 6.69 31.47 0.21 -2.45 16 15 C 0.09 2.15 3.25 31.80 0.10 2.26 16 16 H 0.10 2.43 7.12 -2.39 -0.02 2.42 16 17 O -0.30 -7.01 9.85 -89.73 -0.88 -7.89 16 18 C 0.33 6.67 7.49 84.81 0.63 7.30 16 19 C -0.19 -2.93 10.03 22.43 0.22 -2.71 16 20 C 0.01 0.10 9.83 22.65 0.22 0.33 16 21 C -0.12 -1.79 5.89 -19.94 -0.12 -1.91 16 22 C 0.22 3.42 7.95 137.37 1.09 4.51 16 23 N -0.29 -4.90 12.30 -52.19 -0.64 -5.54 16 24 N -0.06 -0.74 13.47 37.02 0.50 -0.24 16 25 N -0.20 -1.51 7.90 37.02 0.29 -1.21 16 26 H 0.49 -1.11 8.96 -347.53 -3.12 -4.22 16 27 N -0.30 -3.63 12.10 -52.14 -0.63 -4.26 16 28 C 0.19 2.97 10.86 84.91 0.92 3.89 16 29 N -0.55 -11.02 8.68 -308.08 -2.67 -13.70 16 30 C 0.04 1.10 5.09 86.65 0.44 1.54 16 31 H 0.27 15.81 8.31 -92.71 -0.77 15.03 16 32 H 0.02 0.93 7.20 -2.39 -0.02 0.92 16 33 H 0.02 0.99 7.57 -2.38 -0.02 0.97 16 34 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.04 1.84 7.18 -2.39 -0.02 1.83 16 36 H 0.04 1.18 7.97 -2.39 -0.02 1.16 16 37 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.05 1.11 7.66 -2.39 -0.02 1.09 16 39 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.08 1.49 8.07 -2.38 -0.02 1.47 16 41 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 42 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.17 1.69 7.96 -2.91 -0.02 1.67 16 44 H 0.18 2.23 7.89 -2.91 -0.02 2.21 16 45 H 0.08 2.40 7.77 -2.38 -0.02 2.38 16 46 H 0.05 1.50 8.02 -2.39 -0.02 1.48 16 Total: -1.00 -74.83 384.75 -3.03 -77.86 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -2.16 Total: 6.67 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 5.71 Total: -18.39 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -7.58 Total: -104.82 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.88 Total: -7.89 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.57 kcal Total: -74.83 -3.03 -77.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592674477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.396 kcal (2) G-P(sol) polarization free energy of solvation -74.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds