Wall clock time and date at job start Wed Apr 1 2020 04:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86790 * 120.00080 * 2 1 4 4 H 1.48504 * 109.47597 * 270.00291 * 3 2 1 5 5 H 1.48505 * 109.47283 * 30.00164 * 3 2 1 6 6 H 1.48501 * 109.47423 * 150.00426 * 3 2 1 7 7 C 1.37877 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00560 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99691 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47314 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47334 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.46990 * 174.74143 * 11 10 9 13 13 C 1.48560 * 110.99844 * 174.68649 * 12 11 10 14 14 C 1.54376 * 104.59406 * 200.95738 * 13 12 11 15 15 C 1.54266 * 105.06184 * 23.85082 * 14 13 12 16 16 H 1.08996 * 110.32971 * 240.99995 * 15 14 13 17 17 O 1.42900 * 110.31900 * 118.89280 * 15 14 13 18 18 C 1.35648 * 116.99873 * 91.46376 * 17 15 14 19 19 C 1.39018 * 119.55979 * 180.02562 * 18 17 15 20 20 C 1.38148 * 119.23309 * 179.69477 * 19 18 17 21 21 C 1.39888 * 118.38439 * 0.53971 * 20 19 18 22 22 C 1.48440 * 120.47272 * 179.73447 * 21 20 19 23 23 N 1.34050 * 126.67420 * 359.74441 * 22 21 20 24 24 N 1.28985 * 107.26657 * 179.97438 * 23 22 21 25 25 N 1.28723 * 108.94725 * 0.02562 * 24 23 22 26 26 H 0.96998 * 125.34319 * 179.97438 * 25 24 23 27 27 N 1.28868 * 109.32099 * 359.97438 * 25 24 23 28 28 C 1.39145 * 119.05681 * 359.46030 * 21 20 19 29 29 N 1.31819 * 120.66908 * 0.27576 * 28 21 20 30 30 C 1.48555 * 111.00293 * 59.26627 * 12 11 10 31 31 H 0.96998 * 119.99691 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.47238 * 60.00405 * 9 7 2 33 33 H 1.09003 * 109.47665 * 299.99985 * 9 7 2 34 34 H 1.09000 * 109.47184 * 59.99930 * 10 9 7 35 35 H 1.09003 * 109.46687 * 300.00517 * 10 9 7 36 36 H 1.09004 * 109.47030 * 54.74469 * 11 10 9 37 37 H 1.08993 * 109.47288 * 294.73800 * 11 10 9 38 38 H 1.09000 * 110.41132 * 82.18406 * 13 12 11 39 39 H 1.08998 * 110.50989 * 319.78699 * 13 12 11 40 40 H 1.08998 * 110.32648 * 264.95770 * 14 13 12 41 41 H 1.09000 * 110.41310 * 142.79260 * 14 13 12 42 42 H 1.07996 * 120.37950 * 359.97438 * 19 18 17 43 43 H 1.08001 * 120.81249 * 180.29224 * 20 19 18 44 44 H 1.07998 * 119.66689 * 180.29679 * 28 21 20 45 45 H 1.09004 * 110.41154 * 40.26143 * 30 12 11 46 46 H 1.09002 * 110.41173 * 277.82351 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0216 -2.6366 -0.0023 11 6 5.5515 -2.6366 -0.0022 12 7 6.0412 -4.0159 0.1236 13 6 7.5206 -4.0690 -0.0005 14 6 7.8262 -5.5317 -0.3886 15 6 6.5300 -6.0517 -1.0439 16 1 6.1313 -6.8939 -0.4784 17 8 6.7782 -6.4367 -2.3975 18 6 7.1194 -7.7311 -2.6168 19 6 7.3731 -8.1631 -3.9136 20 6 7.7263 -9.4812 -4.1286 21 6 7.8038 -10.3374 -3.0250 22 6 8.1733 -11.7640 -3.2035 23 7 8.4563 -12.3790 -4.3605 24 7 8.7262 -13.6096 -4.0839 25 7 8.6232 -13.7846 -2.8128 26 1 8.7748 -14.6221 -2.3475 27 7 8.2871 -12.6725 -2.2552 28 6 7.5353 -9.8314 -1.7570 29 7 7.2068 -8.5653 -1.5939 30 6 5.5504 -4.8594 -0.9965 31 1 -0.4849 0.8401 0.0004 32 1 3.8752 -0.6805 0.8888 33 1 3.8746 -0.6801 -0.8911 34 1 3.6579 -3.1499 -0.8925 35 1 3.6585 -3.1510 0.8875 36 1 5.9148 -2.0441 0.8375 37 1 5.9149 -2.2058 -0.9351 38 1 7.9910 -3.8222 0.9513 39 1 7.8631 -3.3892 -0.7806 40 1 8.0627 -6.1176 0.4995 41 1 8.6520 -5.5719 -1.0989 42 1 7.2994 -7.4751 -4.7428 43 1 7.9336 -9.8430 -5.1249 44 1 7.5969 -10.4826 -0.8976 45 1 5.5827 -4.3034 -1.9335 46 1 4.5374 -5.2075 -0.7948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592674478.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:36 Heat of formation + Delta-G solvation = 127.098299 kcal Electronic energy + Delta-G solvation = -28104.849927 eV Core-core repulsion = 24033.004340 eV Total energy + Delta-G solvation = -4071.845587 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.91675 -41.10611 -39.38054 -37.57610 -34.93904 -34.32613 -34.02157 -32.84796 -32.26505 -30.78586 -29.99593 -28.69123 -26.46999 -25.50135 -25.00420 -23.98385 -22.83319 -22.49835 -21.13652 -20.96995 -19.76873 -19.61490 -18.76337 -17.60696 -17.20168 -16.97923 -16.67110 -16.30671 -15.52195 -15.29650 -15.05425 -14.47180 -14.28632 -14.15713 -13.97858 -13.74088 -13.43861 -13.40236 -13.02214 -12.83163 -12.71116 -12.63921 -12.30900 -11.89541 -11.64781 -11.64188 -11.62082 -11.58776 -11.43574 -10.96372 -10.84456 -10.76249 -10.61893 -10.28817 -10.01473 -9.94856 -9.68947 -9.56600 -9.15048 -8.76509 -8.51166 -8.39902 -6.01581 -3.99284 0.18838 0.70104 0.77622 1.76778 1.87797 2.62906 3.18700 3.32245 3.35612 3.39641 3.43406 3.67701 3.81596 4.18735 4.38556 4.46468 4.47518 4.55827 4.64061 4.72421 4.80512 4.94914 4.99920 5.23000 5.26965 5.32333 5.38308 5.42610 5.55432 5.60958 5.66179 5.67794 5.71017 5.75463 5.89420 5.93955 5.98280 6.02880 6.14488 6.47887 6.57400 6.78154 6.93893 7.03643 7.15911 7.35013 7.38886 7.47348 7.66991 7.82606 8.57447 9.03855 9.61040 11.11981 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.026104 B = 0.001576 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.355304 B =17762.099557 C =18156.770321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.043 3.957 12 N -0.505 5.505 13 C 0.030 3.970 14 C -0.136 4.136 15 C 0.084 3.916 16 H 0.103 0.897 17 O -0.293 6.293 18 C 0.349 3.651 19 C -0.193 4.193 20 C 0.003 3.997 21 C -0.120 4.120 22 C 0.233 3.767 23 N -0.271 5.271 24 N -0.047 5.047 25 N -0.226 5.226 26 H 0.476 0.524 27 N -0.296 5.296 28 C 0.190 3.810 29 N -0.536 5.536 30 C 0.037 3.963 31 H 0.262 0.738 32 H 0.016 0.984 33 H 0.009 0.991 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.032 0.968 38 H 0.083 0.917 39 H 0.045 0.955 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.152 0.848 43 H 0.154 0.846 44 H 0.169 0.831 45 H 0.059 0.941 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.532 -26.580 -6.030 35.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.138 4.138 11 C -0.084 4.084 12 N -0.230 5.230 13 C -0.098 4.098 14 C -0.174 4.174 15 C 0.027 3.973 16 H 0.121 0.879 17 O -0.198 6.198 18 C 0.170 3.830 19 C -0.214 4.214 20 C -0.024 4.024 21 C -0.127 4.127 22 C -0.047 4.047 23 N -0.144 5.144 24 N -0.043 5.043 25 N -0.072 5.072 26 H 0.331 0.669 27 N -0.148 5.148 28 C 0.030 3.970 29 N -0.259 5.259 30 C -0.091 4.091 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.051 0.949 38 H 0.101 0.899 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.169 0.831 43 H 0.171 0.829 44 H 0.186 0.814 45 H 0.078 0.922 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 22.142 -26.586 -5.207 34.989 hybrid contribution 0.756 0.710 -0.887 1.365 sum 22.898 -25.877 -6.094 35.086 Atomic orbital electron populations 1.69923 1.06292 1.26813 1.51327 1.25040 0.94733 0.99162 0.94638 0.86768 0.80370 0.83646 0.78422 1.20391 1.21410 1.19025 1.21144 0.89506 0.94459 1.50560 0.91035 1.19549 0.97191 0.92213 0.96130 1.21505 0.90766 0.99895 1.01671 1.22522 0.98274 0.87412 1.00218 1.65515 1.05364 1.11397 1.40677 1.23107 0.89921 0.95637 1.01106 1.22739 0.97037 0.96503 1.01152 1.23278 0.96094 0.98476 0.79416 0.87870 1.86345 1.80868 1.21209 1.31389 1.20080 0.88342 0.84750 0.89860 1.21068 1.07501 0.96836 0.95954 1.21411 0.90649 0.91187 0.99150 1.18013 1.11464 0.87363 0.95832 1.23347 1.00765 0.95542 0.85061 1.76087 1.16513 0.97923 1.23885 1.78923 1.15057 1.12657 0.97625 1.47718 1.43111 1.11467 1.04923 0.66914 1.74926 1.20491 0.93228 1.26126 1.22519 0.89006 0.89910 0.95518 1.67437 1.19975 1.04718 1.33721 1.23151 0.98536 0.92957 0.94464 0.92796 0.96555 0.97291 0.92896 0.91764 0.90619 0.94942 0.89870 0.93655 0.89929 0.90806 0.83056 0.82868 0.81413 0.92246 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.21 13.96 55.43 0.77 -27.43 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.52 -14.99 9.66 -34.44 -0.33 -15.33 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.10 -2.00 4.86 -26.73 -0.13 -2.13 16 11 C 0.04 0.71 4.93 -3.82 -0.02 0.69 16 12 N -0.50 -7.28 5.45 -229.98 -1.25 -8.53 16 13 C 0.03 0.36 6.49 -2.18 -0.01 0.34 16 14 C -0.14 -1.45 6.80 -25.35 -0.17 -1.62 16 15 C 0.08 0.99 3.28 -25.35 -0.08 0.91 16 16 H 0.10 1.24 7.06 -51.93 -0.37 0.88 16 17 O -0.29 -3.43 9.71 -18.64 -0.18 -3.61 16 18 C 0.35 3.65 7.48 -17.07 -0.13 3.52 16 19 C -0.19 -1.59 10.03 -39.33 -0.39 -1.99 16 20 C 0.00 0.02 9.83 -39.00 -0.38 -0.36 16 21 C -0.12 -0.98 5.89 -104.74 -0.62 -1.60 16 22 C 0.23 1.95 7.95 -156.30 -1.24 0.71 16 23 N -0.27 -2.44 12.30 32.15 0.40 -2.05 16 24 N -0.05 -0.35 13.47 60.35 0.81 0.46 16 25 N -0.23 -1.06 7.90 60.35 0.48 -0.58 16 26 H 0.48 -0.04 8.96 -340.38 -3.05 -3.09 16 27 N -0.30 -2.06 12.10 32.17 0.39 -1.67 16 28 C 0.19 1.60 10.86 -17.22 -0.19 1.42 16 29 N -0.54 -5.49 8.65 -13.06 -0.11 -5.61 16 30 C 0.04 0.50 5.08 -2.19 -0.01 0.49 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 33 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 34 H 0.05 1.05 7.21 -51.93 -0.37 0.68 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.03 0.52 7.97 -51.93 -0.41 0.10 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.53 7.90 -51.93 -0.41 0.12 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.75 7.98 -51.93 -0.41 0.34 16 42 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 43 H 0.15 0.88 7.96 -52.49 -0.42 0.47 16 44 H 0.17 1.12 7.89 -52.49 -0.41 0.70 16 45 H 0.06 0.84 7.92 -51.93 -0.41 0.43 16 46 H 0.10 1.36 7.78 -51.93 -0.40 0.95 16 LS Contribution 384.74 15.07 5.80 5.80 Total: -1.00 -34.27 384.74 -10.64 -44.91 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -9.14 Total: -5.39 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -3.92 Total: -13.55 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 1.48 Total: -45.41 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: -0.18 Total: -3.61 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.27 -10.64 -44.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592674478.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.006 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds