Wall clock time and date at job start Wed Apr 1 2020 04:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86790 * 120.00080 * 2 1 4 4 H 1.48504 * 109.47597 * 270.00291 * 3 2 1 5 5 H 1.48505 * 109.47283 * 30.00164 * 3 2 1 6 6 H 1.48501 * 109.47423 * 150.00426 * 3 2 1 7 7 C 1.37877 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00560 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99691 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47314 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47334 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.46990 * 174.74143 * 11 10 9 13 13 C 1.48560 * 110.99844 * 174.68649 * 12 11 10 14 14 C 1.54376 * 104.59406 * 200.95738 * 13 12 11 15 15 C 1.54266 * 105.06184 * 23.85082 * 14 13 12 16 16 H 1.08996 * 110.32971 * 240.99995 * 15 14 13 17 17 O 1.42900 * 110.31900 * 118.89280 * 15 14 13 18 18 C 1.35648 * 116.99873 * 91.46376 * 17 15 14 19 19 C 1.39018 * 119.55979 * 180.02562 * 18 17 15 20 20 C 1.38148 * 119.23309 * 179.69477 * 19 18 17 21 21 C 1.39888 * 118.38439 * 0.53971 * 20 19 18 22 22 C 1.48440 * 120.47272 * 179.73447 * 21 20 19 23 23 N 1.34050 * 126.67420 * 359.74441 * 22 21 20 24 24 N 1.28985 * 107.26657 * 179.97438 * 23 22 21 25 25 N 1.28723 * 108.94725 * 0.02562 * 24 23 22 26 26 H 0.96998 * 125.34319 * 179.97438 * 25 24 23 27 27 N 1.28868 * 109.32099 * 359.97438 * 25 24 23 28 28 C 1.39145 * 119.05681 * 359.46030 * 21 20 19 29 29 N 1.31819 * 120.66908 * 0.27576 * 28 21 20 30 30 C 1.48555 * 111.00293 * 59.26627 * 12 11 10 31 31 H 0.96998 * 119.99691 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.47238 * 60.00405 * 9 7 2 33 33 H 1.09003 * 109.47665 * 299.99985 * 9 7 2 34 34 H 1.09000 * 109.47184 * 59.99930 * 10 9 7 35 35 H 1.09003 * 109.46687 * 300.00517 * 10 9 7 36 36 H 1.09004 * 109.47030 * 54.74469 * 11 10 9 37 37 H 1.08993 * 109.47288 * 294.73800 * 11 10 9 38 38 H 1.09000 * 110.41132 * 82.18406 * 13 12 11 39 39 H 1.08998 * 110.50989 * 319.78699 * 13 12 11 40 40 H 1.08998 * 110.32648 * 264.95770 * 14 13 12 41 41 H 1.09000 * 110.41310 * 142.79260 * 14 13 12 42 42 H 1.07996 * 120.37950 * 359.97438 * 19 18 17 43 43 H 1.08001 * 120.81249 * 180.29224 * 20 19 18 44 44 H 1.07998 * 119.66689 * 180.29679 * 28 21 20 45 45 H 1.09004 * 110.41154 * 40.26143 * 30 12 11 46 46 H 1.09002 * 110.41173 * 277.82351 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0216 -2.6366 -0.0023 11 6 5.5515 -2.6366 -0.0022 12 7 6.0412 -4.0159 0.1236 13 6 7.5206 -4.0690 -0.0005 14 6 7.8262 -5.5317 -0.3886 15 6 6.5300 -6.0517 -1.0439 16 1 6.1313 -6.8939 -0.4784 17 8 6.7782 -6.4367 -2.3975 18 6 7.1194 -7.7311 -2.6168 19 6 7.3731 -8.1631 -3.9136 20 6 7.7263 -9.4812 -4.1286 21 6 7.8038 -10.3374 -3.0250 22 6 8.1733 -11.7640 -3.2035 23 7 8.4563 -12.3790 -4.3605 24 7 8.7262 -13.6096 -4.0839 25 7 8.6232 -13.7846 -2.8128 26 1 8.7748 -14.6221 -2.3475 27 7 8.2871 -12.6725 -2.2552 28 6 7.5353 -9.8314 -1.7570 29 7 7.2068 -8.5653 -1.5939 30 6 5.5504 -4.8594 -0.9965 31 1 -0.4849 0.8401 0.0004 32 1 3.8752 -0.6805 0.8888 33 1 3.8746 -0.6801 -0.8911 34 1 3.6579 -3.1499 -0.8925 35 1 3.6585 -3.1510 0.8875 36 1 5.9148 -2.0441 0.8375 37 1 5.9149 -2.2058 -0.9351 38 1 7.9910 -3.8222 0.9513 39 1 7.8631 -3.3892 -0.7806 40 1 8.0627 -6.1176 0.4995 41 1 8.6520 -5.5719 -1.0989 42 1 7.2994 -7.4751 -4.7428 43 1 7.9336 -9.8430 -5.1249 44 1 7.5969 -10.4826 -0.8976 45 1 5.5827 -4.3034 -1.9335 46 1 4.5374 -5.2075 -0.7948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592674478.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:35 Heat of formation + Delta-G solvation = 101.257943 kcal Electronic energy + Delta-G solvation = -28105.970449 eV Core-core repulsion = 24033.004340 eV Total energy + Delta-G solvation = -4072.966109 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.46310 -41.84085 -40.29166 -38.52154 -36.01841 -35.48510 -34.69032 -34.15347 -33.45041 -31.87761 -31.08016 -29.64365 -28.14347 -26.08836 -25.68367 -24.85325 -24.15396 -23.13794 -22.44699 -22.02180 -21.14883 -20.20599 -19.56142 -18.87488 -18.14612 -17.94919 -17.57753 -17.26342 -16.57338 -16.28486 -16.11747 -15.84196 -15.46038 -15.16622 -15.00401 -14.72675 -14.45086 -14.35814 -14.18329 -14.00262 -13.78084 -13.61964 -13.30675 -13.25234 -12.98003 -12.75580 -12.50602 -12.40076 -12.27805 -12.24557 -12.18972 -11.81271 -11.69234 -11.63496 -11.51516 -11.37511 -11.23403 -10.90633 -10.75187 -10.71601 -9.52193 -9.44694 -8.28286 -6.32718 -0.44400 0.13054 0.17344 1.24253 1.36964 1.39243 1.41950 1.51529 1.83091 2.37673 2.61013 2.69525 2.99912 3.07027 3.10638 3.24688 3.51060 3.61960 3.79317 3.97418 4.02642 4.13953 4.15924 4.21323 4.26784 4.29712 4.42212 4.50084 4.59802 4.66332 4.68969 4.76505 4.80047 4.86047 4.92484 4.94092 5.02511 5.05076 5.06494 5.13936 5.31360 5.50933 5.58649 5.61351 5.66732 5.79998 5.99084 6.18514 6.30627 6.69799 6.75411 7.11175 7.31823 8.88733 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.026104 B = 0.001576 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.355304 B =17762.099557 C =18156.770321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.244 1.244 7 C -0.534 4.534 8 H 0.028 0.972 9 C -0.010 4.010 10 C -0.091 4.091 11 C 0.055 3.945 12 N -0.515 5.515 13 C 0.031 3.969 14 C -0.127 4.127 15 C 0.091 3.909 16 H 0.098 0.902 17 O -0.304 6.304 18 C 0.327 3.673 19 C -0.190 4.190 20 C 0.008 3.992 21 C -0.118 4.118 22 C 0.222 3.778 23 N -0.292 5.292 24 N -0.056 5.056 25 N -0.199 5.199 26 H 0.495 0.505 27 N -0.295 5.295 28 C 0.185 3.815 29 N -0.551 5.551 30 C 0.036 3.964 31 H 0.266 0.734 32 H 0.023 0.977 33 H 0.019 0.981 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.040 0.960 38 H 0.096 0.904 39 H 0.050 0.950 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.167 0.833 43 H 0.171 0.829 44 H 0.183 0.817 45 H 0.053 0.947 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.392 -26.792 -6.197 37.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.167 1.167 7 C -0.572 4.572 8 H 0.046 0.954 9 C -0.047 4.047 10 C -0.129 4.129 11 C -0.073 4.073 12 N -0.240 5.240 13 C -0.096 4.096 14 C -0.165 4.165 15 C 0.034 3.966 16 H 0.116 0.884 17 O -0.210 6.210 18 C 0.148 3.852 19 C -0.210 4.210 20 C -0.019 4.019 21 C -0.124 4.124 22 C -0.058 4.058 23 N -0.165 5.165 24 N -0.051 5.051 25 N -0.050 5.050 26 H 0.354 0.646 27 N -0.148 5.148 28 C 0.026 3.974 29 N -0.274 5.274 30 C -0.093 4.093 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.115 0.885 39 H 0.068 0.932 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.184 0.816 43 H 0.188 0.812 44 H 0.200 0.800 45 H 0.071 0.929 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 25.029 -26.851 -5.375 37.099 hybrid contribution -0.189 0.537 -0.835 1.011 sum 24.840 -26.314 -6.210 36.715 Atomic orbital electron populations 1.70086 1.08399 1.28159 1.52736 1.26078 0.95664 1.03718 0.94052 0.85595 0.79564 0.77887 0.79212 1.19160 1.20975 1.16695 1.21516 0.92317 0.93021 1.50391 0.95374 1.19491 0.93751 0.94896 0.96609 1.21314 0.93777 0.97155 1.00677 1.22284 0.95162 0.88885 1.00953 1.65458 1.07309 1.10176 1.41048 1.23188 0.87911 0.96442 1.02058 1.22684 0.96526 0.95765 1.01493 1.23076 0.96195 0.97416 0.79867 0.88443 1.86305 1.81510 1.22220 1.30997 1.20304 0.89739 0.84391 0.90757 1.21254 1.06806 0.97383 0.95572 1.21612 0.89809 0.90700 0.99794 1.18107 1.10774 0.87557 0.95963 1.23374 1.01472 0.95768 0.85234 1.76064 1.17405 0.98519 1.24475 1.78872 1.15467 1.12238 0.98507 1.47788 1.41106 1.11781 1.04346 0.64607 1.74897 1.20318 0.93582 1.26014 1.22728 0.88887 0.89509 0.96247 1.67391 1.20463 1.05401 1.34096 1.23095 0.98569 0.93679 0.93909 0.92533 0.95865 0.96305 0.93691 0.93143 0.89797 0.94216 0.88530 0.93186 0.89114 0.90014 0.81559 0.81188 0.80042 0.92907 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.97 13.96 21.45 0.30 -60.67 16 2 C 0.00 0.07 5.47 84.65 0.46 0.54 16 3 Si 0.95 44.71 27.47 68.60 1.88 46.59 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.24 -10.48 6.54 99.48 0.65 -9.83 16 7 C -0.53 -31.69 9.66 25.60 0.25 -31.44 16 8 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 9 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 10 C -0.09 -3.65 4.86 30.59 0.15 -3.50 16 11 C 0.06 1.72 4.93 86.30 0.43 2.14 16 12 N -0.52 -14.30 5.45 -881.51 -4.81 -19.10 16 13 C 0.03 0.68 6.49 86.45 0.56 1.24 16 14 C -0.13 -2.49 6.80 31.49 0.21 -2.27 16 15 C 0.09 2.11 3.28 31.49 0.10 2.21 16 16 H 0.10 2.35 7.06 -2.39 -0.02 2.33 16 17 O -0.30 -7.00 9.71 -89.62 -0.87 -7.87 16 18 C 0.33 6.63 7.48 84.81 0.63 7.26 16 19 C -0.19 -2.93 10.03 22.44 0.22 -2.70 16 20 C 0.01 0.10 9.83 22.65 0.22 0.32 16 21 C -0.12 -1.79 5.89 -19.94 -0.12 -1.91 16 22 C 0.22 3.42 7.95 137.37 1.09 4.51 16 23 N -0.29 -4.90 12.30 -52.19 -0.64 -5.54 16 24 N -0.06 -0.74 13.47 37.02 0.50 -0.25 16 25 N -0.20 -1.51 7.90 37.02 0.29 -1.21 16 26 H 0.49 -1.10 8.96 -347.55 -3.12 -4.22 16 27 N -0.30 -3.63 12.10 -52.14 -0.63 -4.26 16 28 C 0.19 2.96 10.86 84.91 0.92 3.88 16 29 N -0.55 -10.95 8.65 -308.09 -2.67 -13.62 16 30 C 0.04 0.97 5.08 86.45 0.44 1.41 16 31 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 32 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 33 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 34 H 0.04 1.83 7.21 -2.39 -0.02 1.82 16 35 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.04 1.19 7.97 -2.39 -0.02 1.17 16 38 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.05 1.05 7.90 -2.39 -0.02 1.03 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.08 1.50 7.98 -2.39 -0.02 1.48 16 42 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 43 H 0.17 1.69 7.96 -2.91 -0.02 1.66 16 44 H 0.18 2.22 7.89 -2.91 -0.02 2.20 16 45 H 0.05 1.49 7.92 -2.38 -0.02 1.48 16 46 H 0.08 2.42 7.78 -2.39 -0.02 2.40 16 Total: -1.00 -74.84 384.74 -3.10 -77.94 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -2.16 Total: 6.63 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 5.70 Total: -18.64 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -7.66 Total: -104.65 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.87 Total: -7.87 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.88 Total: 46.59 kcal Total: -74.84 -3.10 -77.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592674478.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.196 kcal (2) G-P(sol) polarization free energy of solvation -74.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds