Wall clock time and date at job start Wed Apr 1 2020 04:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00138 * 2 1 4 4 H 1.48509 * 109.47105 * 270.00247 * 3 2 1 5 5 H 1.48494 * 109.47333 * 30.00033 * 3 2 1 6 6 H 1.48498 * 109.47289 * 150.00338 * 3 2 1 7 7 C 1.37876 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00316 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00121 * 0.27749 * 7 2 1 10 10 N 1.46498 * 109.47145 * 179.72366 * 9 7 2 11 11 C 1.40006 * 119.99846 * 180.02562 * 10 9 7 12 12 C 1.38974 * 119.94193 * 359.72201 * 11 10 9 13 13 C 1.38098 * 120.25075 * 179.72601 * 12 11 10 14 14 C 1.38744 * 120.11437 * 0.54947 * 13 12 11 15 15 N 1.39776 * 120.06484 * 179.74530 * 14 13 12 16 16 C 1.46845 * 110.99716 * 300.27706 * 15 14 13 17 17 C 1.53040 * 109.51863 * 185.83797 * 16 15 14 18 18 C 1.53121 * 109.27765 * 300.81612 * 17 16 15 19 19 O 1.42904 * 109.52321 * 177.56103 * 18 17 16 20 20 C 1.53117 * 109.15711 * 57.65826 * 18 17 16 21 21 C 1.46846 * 110.99473 * 64.48476 * 15 14 13 22 22 C 1.39883 * 119.87391 * 359.72899 * 14 13 12 23 23 C 1.48374 * 120.12239 * 179.97438 * 22 14 13 24 24 N 1.34082 * 126.67606 * 354.78492 * 23 22 14 25 25 N 1.28986 * 107.26346 * 179.97438 * 24 23 22 26 26 N 1.28730 * 108.95273 * 0.02562 * 25 24 23 27 27 H 0.97002 * 125.33705 * 180.02562 * 26 25 24 28 28 N 1.28869 * 109.32787 * 359.72348 * 26 25 24 29 29 C 1.38609 * 119.93629 * 180.02562 * 11 10 9 30 30 H 0.97005 * 119.99797 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.46632 * 299.72120 * 9 7 2 32 32 H 1.09000 * 109.47345 * 59.72180 * 9 7 2 33 33 H 0.97003 * 120.00312 * 359.97438 * 10 9 7 34 34 H 1.08005 * 119.87290 * 359.97438 * 12 11 10 35 35 H 1.07994 * 119.94670 * 180.27323 * 13 12 11 36 36 H 1.09003 * 109.46464 * 305.84550 * 16 15 14 37 37 H 1.09002 * 109.46424 * 65.82334 * 16 15 14 38 38 H 1.09004 * 109.50432 * 180.88162 * 17 16 15 39 39 H 1.08995 * 109.50813 * 60.76337 * 17 16 15 40 40 H 1.08995 * 109.52517 * 297.75019 * 18 17 16 41 41 H 0.96702 * 113.99730 * 60.31647 * 19 18 17 42 42 H 1.09000 * 109.50390 * 182.40228 * 20 18 17 43 43 H 1.08998 * 109.50652 * 62.28737 * 20 18 17 44 44 H 1.08996 * 109.46314 * 294.17540 * 21 15 14 45 45 H 1.09000 * 109.46585 * 54.14632 * 21 15 14 46 46 H 1.07993 * 120.05825 * 359.97015 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 -0.0052 10 7 2.2029 -3.6127 -0.0101 11 6 1.7362 -4.9326 -0.0164 12 6 0.3696 -5.1852 -0.0122 13 6 -0.0978 -6.4846 -0.0241 14 6 0.7959 -7.5459 -0.0289 15 7 0.3217 -8.8607 -0.0355 16 6 -0.5077 -9.1269 1.1467 17 6 -0.8877 -10.6090 1.1814 18 6 -1.6561 -10.9639 -0.0946 19 8 -1.9643 -12.3593 -0.0940 20 6 -0.7889 -10.6319 -1.3121 21 6 -0.4117 -9.1492 -1.2746 22 6 2.1725 -7.2975 -0.0272 23 6 3.1332 -8.4282 -0.0317 24 7 2.8355 -9.7323 0.0604 25 7 3.9486 -10.3829 0.0185 26 7 4.9189 -9.5445 -0.0943 27 1 5.8589 -9.7781 -0.1472 28 7 4.4453 -8.3466 -0.1324 29 6 2.6381 -5.9852 -0.0205 30 1 -0.4850 0.8401 0.0004 31 1 0.6243 -2.5608 0.8846 32 1 0.6243 -2.5530 -0.8954 33 1 3.1566 -3.4355 -0.0097 34 1 -0.3296 -4.3620 -0.0037 35 1 -1.1608 -6.6752 -0.0253 36 1 0.0520 -8.8744 2.0473 37 1 -1.4125 -8.5210 1.0995 38 1 -1.5163 -10.8032 2.0505 39 1 0.0160 -11.2152 1.2425 40 1 -2.5794 -10.3861 -0.1365 41 1 -2.5124 -12.6407 0.6513 42 1 -1.3468 -10.8425 -2.2245 43 1 0.1165 -11.2384 -1.2903 44 1 -1.3169 -8.5432 -1.3104 45 1 0.2177 -8.9127 -2.1326 46 1 3.6998 -5.7878 -0.0192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592678106.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:04 Heat of formation + Delta-G solvation = 108.805860 kcal Electronic energy + Delta-G solvation = -29863.642677 eV Core-core repulsion = 25791.003870 eV Total energy + Delta-G solvation = -4072.638807 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.18596 -40.08885 -38.47488 -36.60168 -34.94663 -34.00694 -33.23412 -32.73594 -31.45958 -30.90458 -30.25191 -28.34050 -26.07799 -24.53158 -24.23867 -23.46758 -23.18419 -22.59652 -21.59943 -20.30886 -19.69222 -18.88436 -17.43470 -17.31520 -16.89306 -16.88163 -16.00988 -15.38252 -14.94109 -14.68890 -14.59174 -14.51047 -14.38638 -13.79245 -13.53146 -13.41467 -13.36901 -13.01361 -12.69653 -12.38617 -12.36111 -12.13566 -11.98562 -11.94958 -11.60202 -11.22577 -11.14301 -11.11011 -11.02622 -10.98313 -10.90711 -10.74362 -10.66805 -10.43007 -10.24198 -9.90301 -9.46821 -9.35120 -8.61771 -8.39250 -8.18119 -6.65100 -6.26973 -4.32260 1.00935 1.49492 1.84274 2.40470 2.77468 3.19098 3.25889 3.28289 3.91375 3.93999 4.08617 4.19301 4.20808 4.40610 4.63841 4.73828 4.75422 5.05310 5.10724 5.21377 5.24004 5.33514 5.41495 5.45658 5.52673 5.69037 5.72721 5.75509 5.76405 5.85716 5.88601 5.92319 6.09543 6.14784 6.23186 6.30500 6.41192 6.51702 6.76072 6.84066 6.94357 7.12909 7.15054 7.33915 7.50169 7.54185 7.69718 7.87206 8.16901 8.43488 8.56261 8.81730 9.34452 10.83568 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.002647 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.555260 B =10577.258836 C =12312.466400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.726 5.726 11 C 0.232 3.768 12 C -0.171 4.171 13 C -0.097 4.097 14 C 0.038 3.962 15 N -0.475 5.475 16 C 0.069 3.931 17 C -0.146 4.146 18 C 0.105 3.895 19 O -0.569 6.569 20 C -0.107 4.107 21 C 0.068 3.932 22 C 0.047 3.953 23 C 0.232 3.768 24 N -0.218 5.218 25 N -0.075 5.075 26 N -0.241 5.241 27 H 0.469 0.531 28 N -0.302 5.302 29 C -0.173 4.173 30 H 0.266 0.734 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.393 0.607 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.033 0.967 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.049 0.951 41 H 0.374 0.626 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.035 0.965 45 H 0.078 0.922 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.234 -21.097 0.741 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.348 5.348 11 C 0.122 3.878 12 C -0.195 4.195 13 C -0.118 4.118 14 C -0.061 4.061 15 N -0.196 5.196 16 C -0.059 4.059 17 C -0.184 4.184 18 C 0.046 3.954 19 O -0.374 6.374 20 C -0.144 4.144 21 C -0.059 4.059 22 C 0.042 3.958 23 C -0.047 4.047 24 N -0.091 5.091 25 N -0.070 5.070 26 N -0.085 5.085 27 H 0.322 0.678 28 N -0.154 5.154 29 C -0.199 4.199 30 H 0.076 0.924 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.227 0.773 34 H 0.148 0.852 35 H 0.137 0.863 36 H 0.095 0.905 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.067 0.933 41 H 0.221 0.779 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.053 0.947 45 H 0.096 0.904 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.852 -21.708 0.234 21.788 hybrid contribution 0.248 1.996 0.464 2.064 sum 2.099 -19.712 0.699 19.836 Atomic orbital electron populations 1.69935 1.06079 1.27424 1.49188 1.24920 0.94941 0.99471 0.94593 0.86411 0.79688 0.82548 0.78289 1.20422 1.20962 1.19738 1.21185 0.93398 0.90361 1.52893 0.91925 1.19143 0.88646 0.82603 0.96676 1.45633 1.09786 1.02163 1.77244 1.17899 0.92429 0.85678 0.91758 1.20792 0.94173 0.96984 1.07572 1.21192 0.98959 0.92354 0.99313 1.18082 0.91158 0.88002 1.08818 1.59331 1.38113 1.20501 1.01626 1.21988 0.95221 0.95009 0.93638 1.22294 1.01578 0.97214 0.97283 1.21869 0.96348 0.81488 0.95681 1.86524 1.74276 1.24883 1.51708 1.21513 1.00180 0.96229 0.96516 1.22030 0.96370 0.94809 0.92669 1.16722 0.88617 0.87681 1.02750 1.23587 0.87548 0.92721 1.00883 1.76446 1.14696 1.02765 1.15222 1.78975 0.91482 1.20952 1.15610 1.47701 1.12473 1.01435 1.46912 0.67801 1.74971 1.12322 1.05629 1.22512 1.20418 0.99294 0.89912 1.10323 0.92412 0.96026 0.96031 0.77298 0.85210 0.86340 0.90547 0.94837 0.91811 0.89723 0.93316 0.77925 0.91345 0.89936 0.94720 0.90384 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.79 13.29 55.43 0.74 -24.06 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -14.09 9.28 -34.44 -0.32 -14.41 16 8 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 9 C 0.25 6.01 4.66 -5.19 -0.02 5.99 16 10 N -0.73 -14.42 5.74 -59.78 -0.34 -14.77 16 11 C 0.23 4.14 6.65 -83.71 -0.56 3.58 16 12 C -0.17 -2.92 9.30 -39.36 -0.37 -3.28 16 13 C -0.10 -1.43 8.68 -39.45 -0.34 -1.77 16 14 C 0.04 0.55 4.69 -83.43 -0.39 0.16 16 15 N -0.47 -6.09 2.83 -170.86 -0.48 -6.57 16 16 C 0.07 0.78 5.11 -3.83 -0.02 0.76 16 17 C -0.15 -1.43 5.72 -26.65 -0.15 -1.58 16 18 C 0.10 1.03 3.54 -26.61 -0.09 0.94 16 19 O -0.57 -5.67 13.32 -35.23 -0.47 -6.14 16 20 C -0.11 -1.16 5.75 -26.65 -0.15 -1.32 16 21 C 0.07 0.80 5.17 -3.83 -0.02 0.78 16 22 C 0.05 0.73 5.89 -104.74 -0.62 0.12 16 23 C 0.23 3.45 7.89 -156.28 -1.23 2.22 16 24 N -0.22 -3.19 10.94 32.15 0.35 -2.84 16 25 N -0.07 -0.94 13.47 60.35 0.81 -0.13 16 26 N -0.24 -2.46 7.90 60.35 0.48 -1.98 16 27 H 0.47 2.46 8.96 -340.36 -3.05 -0.60 16 28 N -0.30 -4.00 12.10 32.16 0.39 -3.61 16 29 C -0.17 -2.78 9.54 -39.07 -0.37 -3.16 16 30 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.02 0.56 7.94 -51.93 -0.41 0.15 16 32 H 0.02 0.56 7.95 -51.93 -0.41 0.15 16 33 H 0.39 7.31 8.33 -40.82 -0.34 6.97 16 34 H 0.13 2.36 6.71 -52.48 -0.35 2.01 16 35 H 0.12 1.52 7.12 -52.49 -0.37 1.14 16 36 H 0.08 0.93 8.11 -51.93 -0.42 0.51 16 37 H 0.03 0.36 7.32 -51.93 -0.38 -0.02 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.37 2.13 9.09 45.56 0.41 2.54 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.03 0.39 7.56 -51.93 -0.39 -0.01 16 45 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 46 H 0.13 1.93 7.89 -52.49 -0.41 1.52 16 LS Contribution 379.46 15.07 5.72 5.72 Total: -1.00 -30.69 379.46 -10.79 -41.48 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -8.20 Total: 6.89 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -4.76 Total: -9.35 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 1.94 Total: -53.95 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.47 Total: -6.14 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.69 -10.79 -41.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678106.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.290 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds