Wall clock time and date at job start Wed Apr 1 2020 04:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00138 * 2 1 4 4 H 1.48509 * 109.47105 * 270.00247 * 3 2 1 5 5 H 1.48494 * 109.47333 * 30.00033 * 3 2 1 6 6 H 1.48498 * 109.47289 * 150.00338 * 3 2 1 7 7 C 1.37876 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00316 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00121 * 0.27749 * 7 2 1 10 10 N 1.46498 * 109.47145 * 179.72366 * 9 7 2 11 11 C 1.40006 * 119.99846 * 180.02562 * 10 9 7 12 12 C 1.38974 * 119.94193 * 359.72201 * 11 10 9 13 13 C 1.38098 * 120.25075 * 179.72601 * 12 11 10 14 14 C 1.38744 * 120.11437 * 0.54947 * 13 12 11 15 15 N 1.39776 * 120.06484 * 179.74530 * 14 13 12 16 16 C 1.46845 * 110.99716 * 300.27706 * 15 14 13 17 17 C 1.53040 * 109.51863 * 185.83797 * 16 15 14 18 18 C 1.53121 * 109.27765 * 300.81612 * 17 16 15 19 19 O 1.42904 * 109.52321 * 177.56103 * 18 17 16 20 20 C 1.53117 * 109.15711 * 57.65826 * 18 17 16 21 21 C 1.46846 * 110.99473 * 64.48476 * 15 14 13 22 22 C 1.39883 * 119.87391 * 359.72899 * 14 13 12 23 23 C 1.48374 * 120.12239 * 179.97438 * 22 14 13 24 24 N 1.34082 * 126.67606 * 354.78492 * 23 22 14 25 25 N 1.28986 * 107.26346 * 179.97438 * 24 23 22 26 26 N 1.28730 * 108.95273 * 0.02562 * 25 24 23 27 27 H 0.97002 * 125.33705 * 180.02562 * 26 25 24 28 28 N 1.28869 * 109.32787 * 359.72348 * 26 25 24 29 29 C 1.38609 * 119.93629 * 180.02562 * 11 10 9 30 30 H 0.97005 * 119.99797 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.46632 * 299.72120 * 9 7 2 32 32 H 1.09000 * 109.47345 * 59.72180 * 9 7 2 33 33 H 0.97003 * 120.00312 * 359.97438 * 10 9 7 34 34 H 1.08005 * 119.87290 * 359.97438 * 12 11 10 35 35 H 1.07994 * 119.94670 * 180.27323 * 13 12 11 36 36 H 1.09003 * 109.46464 * 305.84550 * 16 15 14 37 37 H 1.09002 * 109.46424 * 65.82334 * 16 15 14 38 38 H 1.09004 * 109.50432 * 180.88162 * 17 16 15 39 39 H 1.08995 * 109.50813 * 60.76337 * 17 16 15 40 40 H 1.08995 * 109.52517 * 297.75019 * 18 17 16 41 41 H 0.96702 * 113.99730 * 60.31647 * 19 18 17 42 42 H 1.09000 * 109.50390 * 182.40228 * 20 18 17 43 43 H 1.08998 * 109.50652 * 62.28737 * 20 18 17 44 44 H 1.08996 * 109.46314 * 294.17540 * 21 15 14 45 45 H 1.09000 * 109.46585 * 54.14632 * 21 15 14 46 46 H 1.07993 * 120.05825 * 359.97015 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 -0.0052 10 7 2.2029 -3.6127 -0.0101 11 6 1.7362 -4.9326 -0.0164 12 6 0.3696 -5.1852 -0.0122 13 6 -0.0978 -6.4846 -0.0241 14 6 0.7959 -7.5459 -0.0289 15 7 0.3217 -8.8607 -0.0355 16 6 -0.5077 -9.1269 1.1467 17 6 -0.8877 -10.6090 1.1814 18 6 -1.6561 -10.9639 -0.0946 19 8 -1.9643 -12.3593 -0.0940 20 6 -0.7889 -10.6319 -1.3121 21 6 -0.4117 -9.1492 -1.2746 22 6 2.1725 -7.2975 -0.0272 23 6 3.1332 -8.4282 -0.0317 24 7 2.8355 -9.7323 0.0604 25 7 3.9486 -10.3829 0.0185 26 7 4.9189 -9.5445 -0.0943 27 1 5.8589 -9.7781 -0.1472 28 7 4.4453 -8.3466 -0.1324 29 6 2.6381 -5.9852 -0.0205 30 1 -0.4850 0.8401 0.0004 31 1 0.6243 -2.5608 0.8846 32 1 0.6243 -2.5530 -0.8954 33 1 3.1566 -3.4355 -0.0097 34 1 -0.3296 -4.3620 -0.0037 35 1 -1.1608 -6.6752 -0.0253 36 1 0.0520 -8.8744 2.0473 37 1 -1.4125 -8.5210 1.0995 38 1 -1.5163 -10.8032 2.0505 39 1 0.0160 -11.2152 1.2425 40 1 -2.5794 -10.3861 -0.1365 41 1 -2.5124 -12.6407 0.6513 42 1 -1.3468 -10.8425 -2.2245 43 1 0.1165 -11.2384 -1.2903 44 1 -1.3169 -8.5432 -1.3104 45 1 0.2177 -8.9127 -2.1326 46 1 3.6998 -5.7878 -0.0192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592678106.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:03 Heat of formation + Delta-G solvation = 86.697218 kcal Electronic energy + Delta-G solvation = -29864.601380 eV Core-core repulsion = 25791.003870 eV Total energy + Delta-G solvation = -4073.597509 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.22368 -41.19998 -39.56428 -37.66393 -36.27725 -35.14941 -34.65519 -34.14795 -32.65173 -31.78449 -31.47269 -29.86730 -27.63273 -25.69982 -25.41788 -24.50065 -24.25089 -24.07077 -22.75469 -21.56954 -20.61114 -19.96996 -18.97941 -18.23561 -18.02016 -17.91712 -17.45066 -17.01532 -16.21398 -15.90841 -15.74424 -15.56657 -15.35844 -15.01979 -15.01634 -14.70141 -14.53141 -14.23996 -14.01915 -13.76599 -13.58780 -13.44084 -13.08881 -13.04168 -12.78657 -12.72511 -12.50425 -12.37616 -12.15240 -12.10222 -12.07504 -11.98382 -11.89845 -11.82680 -11.41955 -11.25951 -10.88659 -10.67358 -10.45487 -9.64923 -9.19177 -8.29419 -8.12412 -6.42025 -0.15771 0.41116 0.57696 1.42433 1.42770 1.53854 1.57529 1.59112 2.34475 2.72146 2.90013 2.91463 3.03507 3.06604 3.37106 3.45882 3.89766 3.92908 4.03305 4.17607 4.27406 4.33753 4.44516 4.46839 4.50633 4.54593 4.63461 4.74422 4.76435 4.88402 4.94231 4.96447 4.98129 5.02631 5.14311 5.22168 5.27956 5.33896 5.41258 5.47961 5.53357 5.59436 5.76744 5.78341 5.92034 6.19615 6.44303 6.57813 6.75771 6.97193 7.13867 7.31083 7.38497 8.82074 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.002647 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.555260 B =10577.258836 C =12312.466400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.273 3.727 10 N -0.733 5.733 11 C 0.212 3.788 12 C -0.183 4.183 13 C -0.089 4.089 14 C 0.053 3.947 15 N -0.482 5.482 16 C 0.067 3.933 17 C -0.136 4.136 18 C 0.109 3.891 19 O -0.584 6.584 20 C -0.102 4.102 21 C 0.070 3.930 22 C 0.040 3.960 23 C 0.216 3.784 24 N -0.235 5.235 25 N -0.076 5.076 26 N -0.211 5.211 27 H 0.490 0.510 28 N -0.304 5.304 29 C -0.164 4.164 30 H 0.269 0.731 31 H -0.004 1.004 32 H -0.005 1.005 33 H 0.398 0.602 34 H 0.111 0.889 35 H 0.140 0.860 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.393 0.607 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.067 0.933 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.793 -22.437 0.945 22.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.189 4.189 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.594 4.594 8 H 0.088 0.912 9 C 0.150 3.850 10 N -0.358 5.358 11 C 0.105 3.895 12 C -0.207 4.207 13 C -0.110 4.110 14 C -0.046 4.046 15 N -0.203 5.203 16 C -0.060 4.060 17 C -0.174 4.174 18 C 0.050 3.950 19 O -0.392 6.392 20 C -0.140 4.140 21 C -0.057 4.057 22 C 0.035 3.965 23 C -0.064 4.064 24 N -0.107 5.107 25 N -0.071 5.071 26 N -0.060 5.060 27 H 0.347 0.653 28 N -0.157 5.157 29 C -0.190 4.190 30 H 0.077 0.923 31 H 0.013 0.987 32 H 0.013 0.987 33 H 0.233 0.767 34 H 0.129 0.871 35 H 0.158 0.842 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.243 0.757 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.086 0.914 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.426 -23.129 0.448 23.260 hybrid contribution 0.110 2.159 0.401 2.199 sum 2.536 -20.970 0.850 21.139 Atomic orbital electron populations 1.70059 1.07680 1.28404 1.50178 1.25846 0.95779 1.03178 0.94100 0.85325 0.78530 0.77943 0.78476 1.19806 1.20687 1.18765 1.21589 0.93984 0.91353 1.52517 0.91205 1.18587 0.88632 0.83668 0.94153 1.45242 1.09191 1.02064 1.79351 1.18022 0.93052 0.85120 0.93317 1.20781 0.93791 0.97585 1.08579 1.21334 1.00158 0.91225 0.98297 1.18249 0.90970 0.88867 1.06504 1.59384 1.39162 1.19052 1.02687 1.22043 0.95147 0.96352 0.92462 1.22210 1.01197 0.95528 0.98435 1.21798 0.96556 0.81830 0.94815 1.86481 1.74909 1.24753 1.53058 1.21443 0.99725 0.95121 0.97727 1.22016 0.96337 0.95645 0.91663 1.16882 0.89422 0.87762 1.02443 1.23469 0.87958 0.92706 1.02243 1.76435 1.15628 1.02651 1.15943 1.78923 0.91547 1.20904 1.15710 1.47738 1.13330 1.00345 1.44601 0.65251 1.74927 1.11787 1.06707 1.22290 1.20420 0.99391 0.89678 1.09492 0.92254 0.98656 0.98698 0.76709 0.87094 0.84188 0.91485 0.93771 0.89425 0.91570 0.91945 0.75739 0.90567 0.91840 0.93700 0.91447 0.84652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.85 13.29 21.45 0.28 -52.56 16 2 C 0.01 0.59 5.46 84.66 0.46 1.05 16 3 Si 0.97 41.86 29.54 68.60 2.03 43.89 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.56 -29.63 9.28 25.60 0.24 -29.39 16 8 H 0.07 3.52 7.60 -2.91 -0.02 3.50 16 9 C 0.27 13.71 4.66 85.63 0.40 14.11 16 10 N -0.73 -30.18 5.74 -343.03 -1.97 -32.15 16 11 C 0.21 7.74 6.65 38.10 0.25 7.99 16 12 C -0.18 -6.45 9.30 22.41 0.21 -6.24 16 13 C -0.09 -2.58 8.68 22.36 0.19 -2.39 16 14 C 0.05 1.49 4.69 38.39 0.18 1.67 16 15 N -0.48 -11.79 2.83 -694.47 -1.96 -13.75 16 16 C 0.07 1.40 5.11 86.33 0.44 1.84 16 17 C -0.14 -2.38 5.72 30.65 0.18 -2.20 16 18 C 0.11 1.89 3.54 30.67 0.11 2.00 16 19 O -0.58 -10.28 13.32 -148.98 -1.99 -12.27 16 20 C -0.10 -2.08 5.75 30.65 0.18 -1.91 16 21 C 0.07 1.54 5.17 86.33 0.45 1.99 16 22 C 0.04 1.21 5.89 -19.94 -0.12 1.10 16 23 C 0.22 6.20 7.89 137.33 1.08 7.28 16 24 N -0.23 -6.58 10.94 -52.21 -0.57 -7.15 16 25 N -0.08 -1.78 13.47 37.02 0.50 -1.28 16 26 N -0.21 -3.87 7.90 37.02 0.29 -3.58 16 27 H 0.49 3.92 8.96 -347.53 -3.12 0.80 16 28 N -0.30 -7.56 12.10 -52.16 -0.63 -8.19 16 29 C -0.16 -5.26 9.54 22.60 0.22 -5.05 16 30 H 0.27 14.41 8.31 -92.70 -0.77 13.64 16 31 H 0.00 -0.24 7.94 -2.38 -0.02 -0.26 16 32 H 0.00 -0.26 7.95 -2.39 -0.02 -0.28 16 33 H 0.40 15.17 8.33 -92.71 -0.77 14.40 16 34 H 0.11 4.31 6.71 -2.91 -0.02 4.29 16 35 H 0.14 3.39 7.12 -2.91 -0.02 3.37 16 36 H 0.07 1.54 8.11 -2.39 -0.02 1.52 16 37 H 0.04 0.84 7.32 -2.39 -0.02 0.83 16 38 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.39 3.41 9.09 -74.06 -0.67 2.74 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.04 0.91 7.56 -2.39 -0.02 0.89 16 45 H 0.07 1.62 8.11 -2.39 -0.02 1.61 16 46 H 0.14 4.06 7.89 -2.91 -0.02 4.03 16 Total: -1.00 -66.69 379.46 -3.06 -69.75 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: -3.50 Total: 25.43 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 4.46 Total: -8.14 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -4.06 Total: -118.67 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -1.99 Total: -12.27 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -66.69 -3.06 -69.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678106.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.449 kcal (2) G-P(sol) polarization free energy of solvation -66.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds