Wall clock time and date at job start Wed Apr 1 2020 04:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99942 * 2 1 4 4 H 1.48502 * 109.47144 * 240.00110 * 3 2 1 5 5 H 1.48495 * 109.47424 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47606 * 120.00303 * 3 2 1 7 7 C 1.37875 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00071 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00209 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47458 * 179.97438 * 9 7 2 11 11 C 1.46894 * 111.00430 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47515 * 205.00020 * 11 10 9 13 13 C 1.53000 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47328 * 60.00126 * 13 12 11 15 15 O 1.42903 * 109.47126 * 180.02562 * 14 13 12 16 16 C 1.35645 * 116.99900 * 210.00010 * 15 14 13 17 17 C 1.39007 * 119.55932 * 179.97438 * 16 15 14 18 18 C 1.38152 * 119.23455 * 179.97438 * 17 16 15 19 19 C 1.39882 * 118.38469 * 359.97438 * 18 17 16 20 20 C 1.48442 * 120.47353 * 179.97438 * 19 18 17 21 21 N 1.34059 * 126.67394 * 359.69442 * 20 19 18 22 22 N 1.28984 * 107.26726 * 179.89034 * 21 20 19 23 23 N 1.28733 * 108.94655 * 0.36948 * 22 21 20 24 24 H 0.96996 * 125.34223 * 179.72064 * 23 22 21 25 25 N 1.28873 * 109.31995 * 359.76587 * 23 22 21 26 26 C 1.39140 * 119.05656 * 0.02562 * 19 18 17 27 27 N 1.31821 * 120.67027 * 359.74059 * 26 19 18 28 28 C 1.53002 * 109.46891 * 299.99597 * 14 13 12 29 29 C 1.52997 * 109.46978 * 60.00410 * 28 14 13 30 30 H 0.97001 * 119.99568 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46811 * 59.99338 * 9 7 2 32 32 H 1.09001 * 109.46991 * 299.99624 * 9 7 2 33 33 H 1.00902 * 110.99811 * 303.95209 * 10 9 7 34 34 H 1.08998 * 109.46828 * 325.00585 * 11 10 9 35 35 H 1.09002 * 109.47153 * 59.99762 * 12 11 10 36 36 H 1.09001 * 109.46832 * 299.99953 * 12 11 10 37 37 H 1.09004 * 109.46724 * 180.02562 * 13 12 11 38 38 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 39 39 H 1.08992 * 109.47554 * 59.99639 * 14 13 12 40 40 H 1.08009 * 120.38369 * 359.95228 * 17 16 15 41 41 H 1.08006 * 120.80995 * 179.97438 * 18 17 16 42 42 H 1.08002 * 119.66651 * 179.97438 * 26 19 18 43 43 H 1.09002 * 109.47097 * 180.02562 * 28 14 13 44 44 H 1.09001 * 109.47142 * 300.00176 * 28 14 13 45 45 H 1.09001 * 109.47375 * 59.99908 * 29 28 14 46 46 H 1.09000 * 109.47140 * 179.97438 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5055 -4.9070 0.0011 12 6 2.4117 -5.9784 0.6108 13 6 1.6826 -7.3235 0.6108 14 6 1.3290 -7.7120 -0.8262 15 8 0.6474 -8.9680 -0.8261 16 6 0.8028 -9.7530 -1.9213 17 6 0.1640 -10.9863 -1.9773 18 6 0.3265 -11.7802 -3.0962 19 6 1.1333 -11.3066 -4.1361 20 6 1.3402 -12.1217 -5.3594 21 7 0.8250 -13.3335 -5.6107 22 7 1.2426 -13.6927 -6.7770 23 7 1.9967 -12.7652 -7.2549 24 1 2.4402 -12.7913 -8.1172 25 7 2.0708 -11.7971 -6.4075 26 6 1.7400 -10.0611 -4.0071 27 7 1.5557 -9.3323 -2.9243 28 6 0.4226 -6.6406 -1.4358 29 6 1.1518 -5.2956 -1.4359 30 1 -0.4849 0.8401 0.0004 31 1 0.6247 -2.5570 -0.8896 32 1 0.6241 -2.5567 0.8903 33 1 2.8405 -3.5487 -0.7809 34 1 0.5924 -4.8249 0.5908 35 1 2.6641 -5.7014 1.6344 36 1 3.3247 -6.0604 0.0210 37 1 2.3281 -8.0867 1.0455 38 1 0.7694 -7.2418 1.2003 39 1 2.2421 -7.7937 -1.4157 40 1 -0.4520 -11.3203 -1.1553 41 1 -0.1577 -12.7431 -3.1664 42 1 2.3654 -9.6861 -4.8038 43 1 0.1703 -6.9176 -2.4594 44 1 -0.4906 -6.5589 -0.8463 45 1 2.0650 -5.3773 -2.0254 46 1 0.5062 -4.5324 -1.8706 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592678397.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:27 Heat of formation + Delta-G solvation = 109.517389 kcal Electronic energy + Delta-G solvation = -28483.225172 eV Core-core repulsion = 24410.617220 eV Total energy + Delta-G solvation = -4072.607952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.86932 -41.04011 -39.15778 -37.37067 -34.89927 -34.25210 -33.90056 -32.77024 -32.19078 -30.63399 -30.53439 -28.49318 -25.80813 -25.44972 -24.81335 -23.78253 -22.60070 -22.43017 -21.88123 -20.91670 -19.82011 -19.62100 -18.61640 -17.56159 -17.13858 -16.89530 -16.45353 -15.79250 -15.22895 -15.03593 -14.69831 -14.38457 -14.20110 -14.05806 -13.87282 -13.73867 -13.42018 -13.04252 -12.90324 -12.71048 -12.56889 -12.38248 -12.07176 -11.86410 -11.73007 -11.57138 -11.48405 -11.29759 -11.22605 -10.97264 -10.81216 -10.65354 -10.62105 -10.24497 -10.16208 -9.99452 -9.92791 -9.75343 -9.15446 -8.67318 -8.46912 -7.24359 -6.01917 -4.03813 0.25106 0.74765 0.83622 1.81218 1.93197 2.76359 3.24171 3.34256 3.38116 3.41245 3.42632 3.72730 3.92803 4.43632 4.44426 4.64233 4.74896 4.80127 4.81461 4.84854 5.04317 5.06833 5.31139 5.33663 5.34604 5.37453 5.43505 5.51545 5.61147 5.63484 5.69981 5.71758 5.92865 5.93995 6.02771 6.10825 6.17127 6.21047 6.31173 6.36745 6.63464 6.68095 7.05042 7.28530 7.46039 7.46998 7.71330 7.80156 8.14985 8.41979 8.64099 9.05483 9.61002 11.08995 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.020005 B = 0.001724 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.295376 B =16239.325988 C =17106.900589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.061 0.939 9 C 0.195 3.805 10 N -0.685 5.685 11 C 0.084 3.916 12 C -0.101 4.101 13 C -0.114 4.114 14 C 0.090 3.910 15 O -0.296 6.296 16 C 0.350 3.650 17 C -0.196 4.196 18 C 0.002 3.998 19 C -0.123 4.123 20 C 0.234 3.766 21 N -0.272 5.272 22 N -0.048 5.048 23 N -0.226 5.226 24 H 0.476 0.524 25 N -0.296 5.296 26 C 0.191 3.809 27 N -0.535 5.535 28 C -0.127 4.127 29 C -0.142 4.142 30 H 0.261 0.739 31 H -0.013 1.013 32 H 0.027 0.973 33 H 0.329 0.671 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.168 0.832 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.511 -28.673 -11.198 30.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.079 0.921 9 C 0.068 3.932 10 N -0.314 5.314 11 C -0.027 4.027 12 C -0.139 4.139 13 C -0.152 4.152 14 C 0.035 3.965 15 O -0.202 6.202 16 C 0.171 3.829 17 C -0.216 4.216 18 C -0.024 4.024 19 C -0.129 4.129 20 C -0.046 4.046 21 N -0.145 5.145 22 N -0.043 5.043 23 N -0.072 5.072 24 H 0.331 0.669 25 N -0.147 5.147 26 C 0.031 3.969 27 N -0.258 5.258 28 C -0.166 4.166 29 C -0.181 4.181 30 H 0.071 0.929 31 H 0.005 0.995 32 H 0.045 0.955 33 H 0.146 0.854 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.169 0.831 41 H 0.170 0.830 42 H 0.185 0.815 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.591 -28.236 -10.519 30.243 hybrid contribution 0.036 0.600 -1.542 1.655 sum 2.627 -27.636 -12.061 30.267 Atomic orbital electron populations 1.69953 1.06062 1.26851 1.50866 1.24988 0.94874 0.99338 0.95379 0.86549 0.79418 0.82716 0.78626 1.20311 1.21381 1.20164 1.21168 0.93484 0.90343 1.50381 0.92053 1.19568 0.90617 0.87324 0.95703 1.60733 1.20834 1.01021 1.48773 1.21584 0.96648 0.90761 0.93701 1.21472 0.98185 0.91917 1.02320 1.21656 1.01509 0.98064 0.94001 1.22613 0.95980 0.79322 0.98608 1.86313 1.67971 1.30971 1.34922 1.20113 0.88500 0.88495 0.85801 1.21052 1.05692 0.93719 1.01171 1.21394 0.92212 0.99009 0.89828 1.18004 1.06812 0.96182 0.91913 1.23361 0.95127 0.91728 0.94433 1.76079 1.21132 1.11123 1.06148 1.78914 1.05486 1.14905 1.05035 1.47720 1.32344 1.09116 1.18063 0.66929 1.74941 1.23225 1.15045 1.01533 1.22534 0.92940 0.87974 0.93445 1.67459 1.20173 1.36040 1.02159 1.21885 0.98984 0.94829 1.00868 1.22242 1.00591 0.95794 0.99513 0.92894 0.99517 0.95524 0.85445 0.90987 0.90500 0.92040 0.91409 0.90935 0.89069 0.83149 0.82962 0.81472 0.91925 0.91351 0.91903 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.59 9.32 -34.44 -0.32 -14.91 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.19 5.05 5.24 -4.98 -0.03 5.03 16 10 N -0.68 -14.34 6.24 -108.00 -0.67 -15.01 16 11 C 0.08 1.43 2.47 -67.71 -0.17 1.26 16 12 C -0.10 -1.40 5.53 -26.73 -0.15 -1.55 16 13 C -0.11 -1.38 5.57 -26.73 -0.15 -1.52 16 14 C 0.09 1.12 2.37 -26.73 -0.06 1.06 16 15 O -0.30 -3.59 9.76 -18.64 -0.18 -3.77 16 16 C 0.35 3.89 7.45 -17.07 -0.13 3.76 16 17 C -0.20 -1.69 10.03 -39.33 -0.39 -2.08 16 18 C 0.00 0.02 9.83 -39.00 -0.38 -0.36 16 19 C -0.12 -1.09 5.89 -104.74 -0.62 -1.70 16 20 C 0.23 2.10 7.95 -156.29 -1.24 0.86 16 21 N -0.27 -2.57 12.30 32.15 0.40 -2.18 16 22 N -0.05 -0.38 13.47 60.35 0.81 0.43 16 23 N -0.23 -1.20 7.90 60.35 0.48 -0.72 16 24 H 0.48 0.26 8.96 -340.37 -3.05 -2.79 16 25 N -0.30 -2.27 12.10 32.17 0.39 -1.88 16 26 C 0.19 1.79 10.86 -17.22 -0.19 1.61 16 27 N -0.54 -6.03 8.62 -13.06 -0.11 -6.15 16 28 C -0.13 -1.72 5.54 -26.73 -0.15 -1.86 16 29 C -0.14 -2.19 5.17 -26.73 -0.14 -2.33 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H -0.01 -0.36 7.44 -51.93 -0.39 -0.74 16 32 H 0.03 0.75 8.05 -51.93 -0.42 0.33 16 33 H 0.33 6.62 8.46 -39.29 -0.33 6.29 16 34 H 0.07 1.32 7.80 -51.93 -0.40 0.92 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.17 6.98 -51.93 -0.36 0.80 16 40 H 0.15 1.01 8.06 -52.48 -0.42 0.58 16 41 H 0.15 0.93 7.96 -52.48 -0.42 0.51 16 42 H 0.17 1.30 7.89 -52.49 -0.41 0.89 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 46 H 0.07 1.22 7.45 -51.93 -0.39 0.83 16 LS Contribution 385.38 15.07 5.81 5.81 Total: -1.00 -33.01 385.38 -10.68 -43.70 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -9.10 Total: 0.44 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -4.21 Total: -11.27 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 2.02 Total: -51.62 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -0.18 Total: -3.77 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.01 -10.68 -43.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678397.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.213 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds