Wall clock time and date at job start Wed Apr 1 2020 04:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00311 * 2 1 4 4 H 1.48501 * 109.46982 * 270.00444 * 3 2 1 5 5 H 1.48504 * 109.46915 * 30.00036 * 3 2 1 6 6 H 1.48497 * 109.47172 * 149.99989 * 3 2 1 7 7 C 1.37880 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00458 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99897 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46451 * 300.00048 * 9 7 2 11 11 O 1.42899 * 109.47002 * 59.99639 * 9 7 2 12 12 C 1.52993 * 109.47294 * 179.97438 * 9 7 2 13 13 N 1.46895 * 109.47474 * 179.97438 * 12 9 7 14 14 C 1.46954 * 111.00639 * 189.99920 * 13 12 9 15 15 C 1.53042 * 109.36811 * 183.19107 * 14 13 12 16 16 N 1.46960 * 109.36668 * 301.59859 * 15 14 13 17 17 C 1.39562 * 111.00257 * 183.19039 * 16 15 14 18 18 C 1.39009 * 119.95345 * 180.02562 * 17 16 15 19 19 C 1.37868 * 120.03710 * 180.02562 * 18 17 16 20 20 C 1.39365 * 119.96173 * 359.97438 * 19 18 17 21 21 C 1.48413 * 120.04537 * 180.02562 * 20 19 18 22 22 N 1.34064 * 126.67745 * 0.02562 * 21 20 19 23 23 N 1.28980 * 107.26617 * 179.73585 * 22 21 20 24 24 N 1.28728 * 108.95189 * 359.97438 * 23 22 21 25 25 H 0.97004 * 125.33693 * 179.97438 * 24 23 22 26 26 N 1.28869 * 109.32206 * 0.02562 * 24 23 22 27 27 C 1.39373 * 119.90978 * 0.27423 * 20 19 18 28 28 C 1.37858 * 119.95910 * 359.45304 * 27 20 19 29 29 C 1.46961 * 110.87613 * 59.31895 * 16 15 14 30 30 C 1.46960 * 111.00272 * 313.80540 * 13 12 9 31 31 H 0.97004 * 119.99641 * 359.97438 * 1 2 3 32 32 H 0.96697 * 114.00133 * 60.00942 * 11 9 7 33 33 H 1.09002 * 109.46882 * 59.99474 * 12 9 7 34 34 H 1.08998 * 109.47234 * 299.99966 * 12 9 7 35 35 H 1.08999 * 109.48553 * 63.22390 * 14 13 12 36 36 H 1.09002 * 109.48964 * 303.16163 * 14 13 12 37 37 H 1.09006 * 109.49169 * 181.63592 * 15 14 13 38 38 H 1.08996 * 109.51300 * 61.57875 * 15 14 13 39 39 H 1.08000 * 119.98710 * 0.04017 * 18 17 16 40 40 H 1.08005 * 120.02008 * 179.97438 * 19 18 17 41 41 H 1.08003 * 120.01921 * 179.72772 * 27 20 19 42 42 H 1.08001 * 119.98023 * 180.27551 * 28 27 20 43 43 H 1.08999 * 109.48800 * 60.64885 * 29 16 15 44 44 H 1.09003 * 109.48412 * 180.71504 * 29 16 15 45 45 H 1.09004 * 109.48108 * 296.77400 * 30 13 12 46 46 H 1.08998 * 109.48631 * 56.81335 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6240 -2.5574 0.8880 11 8 0.4298 -2.5741 -1.1688 12 6 2.2451 -3.6621 -0.0027 13 7 1.5106 -4.9343 -0.0033 14 6 2.4174 -6.0661 0.2340 15 6 1.6290 -7.3750 0.1468 16 7 0.5435 -7.3569 1.1374 17 6 -0.1543 -8.5656 1.1369 18 6 -1.2233 -8.7502 2.0060 19 6 -1.9135 -9.9436 2.0073 20 6 -1.5393 -10.9651 1.1362 21 6 -2.2813 -12.2504 1.1357 22 7 -3.3266 -12.5719 1.9112 23 7 -3.6813 -13.7716 1.5975 24 7 -2.9066 -14.2065 0.6659 25 1 -2.9624 -15.0827 0.2533 26 7 -2.0448 -13.2959 0.3682 27 6 -0.4639 -10.7798 0.2693 28 6 0.2203 -9.5830 0.2669 29 6 -0.3633 -6.2250 0.9001 30 6 0.4251 -4.9162 0.9873 31 1 -0.4850 0.8401 0.0004 32 1 0.9222 -2.5283 -1.9998 33 1 2.8718 -3.6051 0.8873 34 1 2.8717 -3.6036 -0.8926 35 1 2.8617 -5.9746 1.2251 36 1 3.2050 -6.0652 -0.5195 37 1 2.2937 -8.2143 0.3512 38 1 1.2073 -7.4801 -0.8527 39 1 -1.5136 -7.9582 2.6805 40 1 -2.7438 -10.0869 2.6831 41 1 -0.1695 -11.5719 -0.4035 42 1 1.0509 -9.4375 -0.4079 43 1 -0.8076 -6.3166 -0.0910 44 1 -1.1509 -6.2260 1.6537 45 1 0.8469 -4.8116 1.9869 46 1 -0.2394 -4.0767 0.7832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592682484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:16 Heat of formation + Delta-G solvation = 126.738915 kcal Electronic energy + Delta-G solvation = -29035.033665 eV Core-core repulsion = 24963.172494 eV Total energy + Delta-G solvation = -4071.861171 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.69925 -40.47047 -38.45036 -36.40476 -34.75769 -34.36304 -33.29471 -32.10806 -31.72876 -30.48409 -30.22082 -28.33448 -26.32385 -25.07650 -24.29453 -24.06295 -23.30344 -22.05292 -21.38489 -20.41106 -19.53203 -19.29295 -17.79270 -17.39407 -17.03234 -16.34567 -15.62056 -15.15075 -14.84337 -14.76163 -14.63958 -14.40009 -14.24257 -14.06094 -13.92438 -13.68426 -13.56149 -13.25367 -12.77903 -12.73446 -12.57996 -12.12704 -11.87430 -11.64077 -11.56066 -11.34568 -11.25428 -11.15815 -11.09555 -10.97414 -10.90070 -10.83727 -10.59712 -10.46740 -10.08280 -9.60981 -9.16681 -8.94076 -8.58673 -8.10432 -7.89013 -7.76970 -6.03606 -4.21619 0.51947 0.94425 1.23051 1.96357 2.12786 3.25974 3.33314 3.35568 3.44650 3.51656 3.79605 3.95770 4.27856 4.44620 4.66776 4.77724 4.91047 5.01965 5.13718 5.17621 5.20733 5.23772 5.25301 5.38249 5.45356 5.48421 5.58267 5.68035 5.79480 5.84703 5.95715 6.02311 6.06051 6.10371 6.14232 6.19544 6.27160 6.28005 6.42624 6.46958 6.52826 6.79225 6.91580 7.14695 7.48719 7.57498 7.72586 7.81704 7.88529 8.16619 8.81544 9.41471 9.57616 11.00573 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.033456 B = 0.001792 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.711481 B =15623.264952 C =16046.032849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.575 4.575 8 H 0.055 0.945 9 C 0.230 3.770 10 H 0.058 0.942 11 O -0.557 6.557 12 C 0.031 3.969 13 N -0.530 5.530 14 C 0.052 3.948 15 C 0.054 3.946 16 N -0.491 5.491 17 C 0.147 3.853 18 C -0.147 4.147 19 C -0.046 4.046 20 C -0.062 4.062 21 C 0.232 3.768 22 N -0.272 5.272 23 N -0.052 5.052 24 N -0.231 5.231 25 H 0.474 0.526 26 N -0.301 5.301 27 C -0.048 4.048 28 C -0.179 4.179 29 C 0.064 3.936 30 C 0.052 3.948 31 H 0.261 0.739 32 H 0.345 0.655 33 H 0.028 0.972 34 H 0.065 0.935 35 H 0.037 0.963 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.057 0.943 44 H 0.084 0.916 45 H 0.035 0.965 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.052 -26.143 0.763 26.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.613 4.613 8 H 0.073 0.927 9 C 0.172 3.828 10 H 0.076 0.924 11 O -0.359 6.359 12 C -0.097 4.097 13 N -0.255 5.255 14 C -0.077 4.077 15 C -0.072 4.072 16 N -0.205 5.205 17 C 0.047 3.953 18 C -0.167 4.167 19 C -0.067 4.067 20 C -0.067 4.067 21 C -0.048 4.048 22 N -0.145 5.145 23 N -0.047 5.047 24 N -0.076 5.076 25 H 0.328 0.672 26 N -0.153 5.153 27 C -0.069 4.069 28 C -0.200 4.200 29 C -0.061 4.061 30 C -0.076 4.076 31 H 0.070 0.930 32 H 0.189 0.811 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.148 0.852 42 H 0.153 0.847 43 H 0.075 0.925 44 H 0.102 0.898 45 H 0.054 0.946 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.138 -26.393 1.432 26.618 hybrid contribution 1.496 0.636 -0.601 1.733 sum -1.642 -25.757 0.831 25.822 Atomic orbital electron populations 1.70066 1.05897 1.26469 1.46979 1.25012 0.94696 0.99089 0.93803 0.86673 0.79948 0.83521 0.78222 1.20513 1.21114 1.19893 1.21639 0.93177 0.91569 1.54935 0.92708 1.19439 0.87863 0.88903 0.86606 0.92428 1.86529 1.37898 1.96297 1.15136 1.23060 0.97576 0.89315 0.99702 1.62214 1.11422 1.03240 1.48633 1.22181 0.95029 0.90331 1.00141 1.22385 0.92772 0.98467 0.93617 1.59155 1.11788 1.01859 1.47720 1.19250 0.91853 0.91258 0.92943 1.20757 0.96891 0.98304 1.00770 1.20992 0.98318 0.91270 0.96145 1.17092 0.98121 0.88843 1.02620 1.23750 0.94255 0.94902 0.91852 1.76090 1.12163 1.04111 1.22154 1.78893 1.15700 1.06327 1.03824 1.47707 1.18567 1.16193 1.25177 0.67189 1.74936 1.16088 0.99383 1.24885 1.20948 0.92817 0.96899 0.96227 1.21248 1.03661 0.94409 1.00699 1.22408 0.93981 0.88434 1.01290 1.22304 0.94780 0.96833 0.93672 0.92961 0.81126 0.95378 0.91615 0.94491 0.90343 0.90014 0.92461 0.84767 0.84630 0.85179 0.84729 0.92515 0.89776 0.94632 0.87568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.80 12.84 55.43 0.71 -24.09 16 2 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 3 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.57 -15.35 8.76 -34.44 -0.30 -15.65 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.23 5.55 2.12 -27.88 -0.06 5.49 16 10 H 0.06 1.52 6.26 -51.93 -0.33 1.19 16 11 O -0.56 -13.82 12.40 -35.23 -0.44 -14.25 16 12 C 0.03 0.61 4.88 -3.83 -0.02 0.59 16 13 N -0.53 -9.09 4.73 -234.48 -1.11 -10.20 16 14 C 0.05 0.72 5.58 -3.77 -0.02 0.70 16 15 C 0.05 0.65 4.29 -3.77 -0.02 0.63 16 16 N -0.49 -6.25 4.75 -170.93 -0.81 -7.06 16 17 C 0.15 1.71 5.64 -83.77 -0.47 1.23 16 18 C -0.15 -1.58 9.17 -39.43 -0.36 -1.95 16 19 C -0.05 -0.48 9.69 -39.30 -0.38 -0.86 16 20 C -0.06 -0.66 5.88 -104.86 -0.62 -1.28 16 21 C 0.23 2.52 7.93 -156.29 -1.24 1.28 16 22 N -0.27 -3.11 12.23 32.15 0.39 -2.71 16 23 N -0.05 -0.49 13.47 60.35 0.81 0.32 16 24 N -0.23 -1.54 7.90 60.35 0.48 -1.06 16 25 H 0.47 0.80 8.96 -340.36 -3.05 -2.25 16 26 N -0.30 -2.77 12.08 32.17 0.39 -2.38 16 27 C -0.05 -0.47 9.69 -39.30 -0.38 -0.85 16 28 C -0.18 -1.84 8.80 -39.43 -0.35 -2.19 16 29 C 0.06 0.88 5.38 -3.77 -0.02 0.86 16 30 C 0.05 0.88 4.93 -3.77 -0.02 0.86 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.35 7.79 9.04 45.56 0.41 8.21 16 33 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 0.82 7.16 -51.93 -0.37 0.45 16 38 H 0.06 0.69 7.57 -51.93 -0.39 0.30 16 39 H 0.13 1.33 7.17 -52.49 -0.38 0.95 16 40 H 0.14 1.27 7.88 -52.48 -0.41 0.86 16 41 H 0.13 1.10 7.88 -52.48 -0.41 0.69 16 42 H 0.13 1.21 5.79 -52.49 -0.30 0.90 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.08 1.04 6.81 -51.93 -0.35 0.68 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.11 2.09 5.84 -51.93 -0.30 1.79 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -32.13 374.58 -11.27 -43.40 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -7.97 Total: 5.64 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -4.35 Total: -9.03 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.86 Total: -47.19 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.44 Total: -14.25 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.13 -11.27 -43.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592682484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.138 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds