Wall clock time and date at job start Wed Apr 1 2020 04:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00311 * 2 1 4 4 H 1.48501 * 109.46982 * 270.00444 * 3 2 1 5 5 H 1.48504 * 109.46915 * 30.00036 * 3 2 1 6 6 H 1.48497 * 109.47172 * 149.99989 * 3 2 1 7 7 C 1.37880 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00458 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99897 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46451 * 300.00048 * 9 7 2 11 11 O 1.42899 * 109.47002 * 59.99639 * 9 7 2 12 12 C 1.52993 * 109.47294 * 179.97438 * 9 7 2 13 13 N 1.46895 * 109.47474 * 179.97438 * 12 9 7 14 14 C 1.46954 * 111.00639 * 189.99920 * 13 12 9 15 15 C 1.53042 * 109.36811 * 183.19107 * 14 13 12 16 16 N 1.46960 * 109.36668 * 301.59859 * 15 14 13 17 17 C 1.39562 * 111.00257 * 183.19039 * 16 15 14 18 18 C 1.39009 * 119.95345 * 180.02562 * 17 16 15 19 19 C 1.37868 * 120.03710 * 180.02562 * 18 17 16 20 20 C 1.39365 * 119.96173 * 359.97438 * 19 18 17 21 21 C 1.48413 * 120.04537 * 180.02562 * 20 19 18 22 22 N 1.34064 * 126.67745 * 0.02562 * 21 20 19 23 23 N 1.28980 * 107.26617 * 179.73585 * 22 21 20 24 24 N 1.28728 * 108.95189 * 359.97438 * 23 22 21 25 25 H 0.97004 * 125.33693 * 179.97438 * 24 23 22 26 26 N 1.28869 * 109.32206 * 0.02562 * 24 23 22 27 27 C 1.39373 * 119.90978 * 0.27423 * 20 19 18 28 28 C 1.37858 * 119.95910 * 359.45304 * 27 20 19 29 29 C 1.46961 * 110.87613 * 59.31895 * 16 15 14 30 30 C 1.46960 * 111.00272 * 313.80540 * 13 12 9 31 31 H 0.97004 * 119.99641 * 359.97438 * 1 2 3 32 32 H 0.96697 * 114.00133 * 60.00942 * 11 9 7 33 33 H 1.09002 * 109.46882 * 59.99474 * 12 9 7 34 34 H 1.08998 * 109.47234 * 299.99966 * 12 9 7 35 35 H 1.08999 * 109.48553 * 63.22390 * 14 13 12 36 36 H 1.09002 * 109.48964 * 303.16163 * 14 13 12 37 37 H 1.09006 * 109.49169 * 181.63592 * 15 14 13 38 38 H 1.08996 * 109.51300 * 61.57875 * 15 14 13 39 39 H 1.08000 * 119.98710 * 0.04017 * 18 17 16 40 40 H 1.08005 * 120.02008 * 179.97438 * 19 18 17 41 41 H 1.08003 * 120.01921 * 179.72772 * 27 20 19 42 42 H 1.08001 * 119.98023 * 180.27551 * 28 27 20 43 43 H 1.08999 * 109.48800 * 60.64885 * 29 16 15 44 44 H 1.09003 * 109.48412 * 180.71504 * 29 16 15 45 45 H 1.09004 * 109.48108 * 296.77400 * 30 13 12 46 46 H 1.08998 * 109.48631 * 56.81335 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6240 -2.5574 0.8880 11 8 0.4298 -2.5741 -1.1688 12 6 2.2451 -3.6621 -0.0027 13 7 1.5106 -4.9343 -0.0033 14 6 2.4174 -6.0661 0.2340 15 6 1.6290 -7.3750 0.1468 16 7 0.5435 -7.3569 1.1374 17 6 -0.1543 -8.5656 1.1369 18 6 -1.2233 -8.7502 2.0060 19 6 -1.9135 -9.9436 2.0073 20 6 -1.5393 -10.9651 1.1362 21 6 -2.2813 -12.2504 1.1357 22 7 -3.3266 -12.5719 1.9112 23 7 -3.6813 -13.7716 1.5975 24 7 -2.9066 -14.2065 0.6659 25 1 -2.9624 -15.0827 0.2533 26 7 -2.0448 -13.2959 0.3682 27 6 -0.4639 -10.7798 0.2693 28 6 0.2203 -9.5830 0.2669 29 6 -0.3633 -6.2250 0.9001 30 6 0.4251 -4.9162 0.9873 31 1 -0.4850 0.8401 0.0004 32 1 0.9222 -2.5283 -1.9998 33 1 2.8718 -3.6051 0.8873 34 1 2.8717 -3.6036 -0.8926 35 1 2.8617 -5.9746 1.2251 36 1 3.2050 -6.0652 -0.5195 37 1 2.2937 -8.2143 0.3512 38 1 1.2073 -7.4801 -0.8527 39 1 -1.5136 -7.9582 2.6805 40 1 -2.7438 -10.0869 2.6831 41 1 -0.1695 -11.5719 -0.4035 42 1 1.0509 -9.4375 -0.4079 43 1 -0.8076 -6.3166 -0.0910 44 1 -1.1509 -6.2260 1.6537 45 1 0.8469 -4.8116 1.9869 46 1 -0.2394 -4.0767 0.7832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592682484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:15 Heat of formation + Delta-G solvation = 101.467249 kcal Electronic energy + Delta-G solvation = -29036.129527 eV Core-core repulsion = 24963.172494 eV Total energy + Delta-G solvation = -4072.957033 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.41379 -41.42523 -39.59022 -37.86118 -36.06758 -35.22479 -34.22378 -34.11263 -32.66593 -31.49188 -31.36968 -29.78344 -27.77022 -25.90149 -25.67470 -25.05778 -24.42491 -23.10225 -22.30124 -21.80103 -20.71158 -20.07720 -19.17578 -18.49334 -18.10026 -17.25469 -16.70679 -16.59567 -16.43963 -16.15767 -15.95932 -15.67276 -15.52805 -15.24299 -14.98971 -14.81359 -14.58620 -14.37149 -14.24297 -13.76703 -13.52463 -13.17671 -13.00879 -12.95996 -12.83917 -12.73549 -12.59228 -12.37291 -12.36158 -12.20906 -12.15708 -12.07255 -11.95361 -11.73695 -11.66260 -10.88912 -10.66143 -10.48945 -10.04325 -9.94683 -9.18018 -8.77079 -8.12113 -6.37216 -0.25489 0.20772 0.44913 1.31899 1.41520 1.42182 1.46881 1.52538 2.39497 2.58573 2.74396 2.93205 3.03450 3.14733 3.21321 3.78395 3.91438 4.01681 4.04858 4.20790 4.22970 4.27840 4.30076 4.38520 4.42055 4.46406 4.53071 4.57242 4.61646 4.66191 4.68677 4.79345 4.91360 4.93582 5.06328 5.08502 5.12019 5.26928 5.28771 5.48490 5.62625 5.64856 5.69075 5.78009 5.93585 5.99090 6.18185 6.27293 6.30307 6.75469 7.15706 7.36646 7.62508 8.92045 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.033456 B = 0.001792 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.711481 B =15623.264952 C =16046.032849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.028 3.972 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.589 4.589 8 H 0.058 0.942 9 C 0.232 3.768 10 H 0.028 0.972 11 O -0.570 6.570 12 C 0.048 3.952 13 N -0.535 5.535 14 C 0.052 3.948 15 C 0.059 3.941 16 N -0.497 5.497 17 C 0.130 3.870 18 C -0.150 4.150 19 C -0.050 4.050 20 C -0.066 4.066 21 C 0.217 3.783 22 N -0.298 5.298 23 N -0.059 5.059 24 N -0.202 5.202 25 H 0.494 0.506 26 N -0.299 5.299 27 C -0.047 4.047 28 C -0.175 4.175 29 C 0.075 3.925 30 C 0.059 3.941 31 H 0.261 0.739 32 H 0.354 0.646 33 H 0.024 0.976 34 H 0.073 0.927 35 H 0.032 0.968 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.059 0.941 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.146 0.854 42 H 0.151 0.849 43 H 0.048 0.952 44 H 0.096 0.904 45 H 0.027 0.973 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.839 -28.029 0.083 28.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.175 4.175 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.627 4.627 8 H 0.076 0.924 9 C 0.174 3.826 10 H 0.045 0.955 11 O -0.373 6.373 12 C -0.080 4.080 13 N -0.260 5.260 14 C -0.077 4.077 15 C -0.068 4.068 16 N -0.211 5.211 17 C 0.031 3.969 18 C -0.170 4.170 19 C -0.071 4.071 20 C -0.071 4.071 21 C -0.062 4.062 22 N -0.170 5.170 23 N -0.054 5.054 24 N -0.053 5.053 25 H 0.353 0.647 26 N -0.151 5.151 27 C -0.067 4.067 28 C -0.196 4.196 29 C -0.050 4.050 30 C -0.070 4.070 31 H 0.070 0.930 32 H 0.198 0.802 33 H 0.042 0.958 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.113 0.887 37 H 0.127 0.873 38 H 0.077 0.923 39 H 0.156 0.844 40 H 0.159 0.841 41 H 0.164 0.836 42 H 0.169 0.831 43 H 0.066 0.934 44 H 0.114 0.886 45 H 0.045 0.955 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.920 -28.327 0.748 28.402 hybrid contribution 1.070 1.055 -0.415 1.559 sum -0.850 -27.272 0.333 27.287 Atomic orbital electron populations 1.70204 1.07545 1.27290 1.48405 1.25851 0.95465 1.02749 0.93445 0.85594 0.78714 0.79045 0.78418 1.19820 1.21013 1.19051 1.22061 0.93536 0.92890 1.54233 0.92390 1.19275 0.87856 0.90107 0.85381 0.95460 1.86485 1.38645 1.96420 1.15740 1.22683 0.96271 0.89260 0.99786 1.62188 1.11896 1.03052 1.48887 1.22297 0.95102 0.89849 1.00408 1.22417 0.92761 0.97996 0.93623 1.59146 1.11807 1.01837 1.48310 1.19315 0.92569 0.91043 0.93995 1.20855 0.96840 0.98590 1.00765 1.21063 0.98485 0.91170 0.96372 1.17264 0.98280 0.88898 1.02625 1.23826 0.94568 0.95411 0.92402 1.76073 1.12873 1.04979 1.23115 1.78839 1.16112 1.05982 1.04497 1.47775 1.17042 1.16560 1.23892 0.64736 1.74894 1.16366 0.99346 1.24543 1.21107 0.92322 0.97175 0.96126 1.21416 1.03853 0.93985 1.00303 1.22202 0.93944 0.87627 1.01217 1.22123 0.94406 0.97408 0.93052 0.93033 0.80176 0.95786 0.90884 0.94953 0.88698 0.87331 0.92268 0.84416 0.84141 0.83597 0.83134 0.93414 0.88616 0.95483 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.03 12.84 21.45 0.28 -52.75 16 2 C 0.03 1.52 5.40 84.66 0.46 1.98 16 3 Si 0.96 42.89 29.54 68.60 2.03 44.92 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 7 C -0.59 -31.81 8.76 25.60 0.22 -31.59 16 8 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.23 11.51 2.12 29.85 0.06 11.58 16 10 H 0.03 1.53 6.26 -2.39 -0.01 1.51 16 11 O -0.57 -29.05 12.40 -148.98 -1.85 -30.90 16 12 C 0.05 1.90 4.88 86.30 0.42 2.32 16 13 N -0.54 -18.29 4.73 -895.77 -4.23 -22.52 16 14 C 0.05 1.35 5.58 86.31 0.48 1.84 16 15 C 0.06 1.27 4.29 86.31 0.37 1.64 16 16 N -0.50 -11.99 4.75 -694.71 -3.30 -15.29 16 17 C 0.13 2.82 5.64 38.28 0.22 3.03 16 18 C -0.15 -3.11 9.17 22.37 0.21 -2.91 16 19 C -0.05 -1.00 9.69 22.45 0.22 -0.78 16 20 C -0.07 -1.32 5.88 -20.02 -0.12 -1.44 16 21 C 0.22 4.42 7.93 137.35 1.09 5.51 16 22 N -0.30 -6.51 12.23 -52.20 -0.64 -7.15 16 23 N -0.06 -1.03 13.47 37.02 0.50 -0.54 16 24 N -0.20 -2.27 7.90 37.02 0.29 -1.98 16 25 H 0.49 0.46 8.96 -347.53 -3.12 -2.66 16 26 N -0.30 -4.88 12.08 -52.15 -0.63 -5.51 16 27 C -0.05 -0.82 9.69 22.45 0.22 -0.60 16 28 C -0.17 -3.19 8.80 22.37 0.20 -2.99 16 29 C 0.08 2.09 5.38 86.31 0.46 2.55 16 30 C 0.06 2.04 4.93 86.31 0.43 2.46 16 31 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 32 H 0.35 16.23 9.04 -74.06 -0.67 15.56 16 33 H 0.02 0.96 8.08 -2.39 -0.02 0.94 16 34 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.03 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.11 1.80 7.16 -2.38 -0.02 1.79 16 38 H 0.06 1.28 7.57 -2.39 -0.02 1.26 16 39 H 0.14 2.66 7.17 -2.91 -0.02 2.64 16 40 H 0.14 2.58 7.88 -2.91 -0.02 2.56 16 41 H 0.15 2.06 7.88 -2.91 -0.02 2.04 16 42 H 0.15 2.21 5.79 -2.91 -0.02 2.19 16 43 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.10 2.38 6.81 -2.39 -0.02 2.37 16 45 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.07 2.94 5.84 -2.39 -0.01 2.93 16 Total: -1.00 -69.47 374.58 -5.36 -74.83 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: -2.74 Total: 24.29 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 4.93 Total: -7.40 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -7.73 Total: -105.74 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -1.85 Total: -30.90 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -69.47 -5.36 -74.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592682484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.300 kcal (2) G-P(sol) polarization free energy of solvation -69.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds