Wall clock time and date at job start Wed Apr 1 2020 04:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00196 * 2 1 4 4 H 1.48500 * 109.46908 * 240.00096 * 3 2 1 5 5 H 1.48505 * 109.46949 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47258 * 119.99866 * 3 2 1 7 7 C 1.38819 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99960 * 163.07471 * 7 2 1 9 9 N 1.36942 * 119.99910 * 343.07277 * 7 2 1 10 10 C 1.46921 * 120.63192 * 331.83707 * 9 7 2 11 11 C 1.53193 * 108.77484 * 233.63256 * 10 9 7 12 12 C 1.53041 * 109.30827 * 305.36337 * 11 10 9 13 13 N 1.46500 * 109.45862 * 181.39067 * 12 11 10 14 14 C 1.39561 * 120.00039 * 155.00441 * 13 12 11 15 15 C 1.39031 * 119.95660 * 359.97029 * 14 13 12 16 16 C 1.37849 * 120.04085 * 180.02562 * 15 14 13 17 17 C 1.39392 * 119.95639 * 0.02562 * 16 15 14 18 18 C 1.48414 * 120.04248 * 180.02562 * 17 16 15 19 19 N 1.34062 * 126.67685 * 179.66056 * 18 17 16 20 20 N 1.28989 * 107.26482 * 179.83657 * 19 18 17 21 21 N 1.28727 * 108.94704 * 0.43939 * 20 19 18 22 22 H 0.97002 * 125.33599 * 179.75843 * 21 20 19 23 23 N 1.28872 * 109.32760 * 359.71861 * 21 20 19 24 24 C 1.39346 * 119.91461 * 359.97438 * 17 16 15 25 25 C 1.37885 * 119.96235 * 0.02562 * 24 17 16 26 26 C 1.50693 * 119.98303 * 179.72281 * 25 24 17 27 27 O 1.42902 * 109.47203 * 359.97438 * 26 25 24 28 28 C 1.53034 * 109.54157 * 61.36802 * 12 11 10 29 29 C 1.46921 * 120.62604 * 151.86022 * 9 7 2 30 30 H 0.97000 * 120.00096 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.58390 * 113.84079 * 10 9 7 32 32 H 1.09001 * 109.70511 * 353.48744 * 10 9 7 33 33 H 1.08997 * 109.49601 * 185.41803 * 11 10 9 34 34 H 1.08993 * 109.52624 * 65.32959 * 11 10 9 35 35 H 1.08999 * 109.46188 * 301.35920 * 12 11 10 36 36 H 0.97006 * 119.99761 * 334.99280 * 13 12 11 37 37 H 1.07994 * 119.98204 * 0.02800 * 15 14 13 38 38 H 1.08000 * 120.02276 * 180.02562 * 16 15 14 39 39 H 1.08007 * 120.02178 * 179.97438 * 24 17 16 40 40 H 1.09006 * 109.47297 * 119.99724 * 26 25 24 41 41 H 1.08995 * 109.47408 * 239.99806 * 26 25 24 42 42 H 0.96703 * 114.00272 * 179.97438 * 27 26 25 43 43 H 1.08999 * 109.49660 * 58.58025 * 28 12 11 44 44 H 1.09002 * 109.50526 * 178.68464 * 28 12 11 45 45 H 1.09005 * 109.58469 * 246.15863 * 29 9 7 46 46 H 1.08997 * 109.59192 * 6.43250 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2226 -0.2717 9 7 1.3700 -2.3623 0.3464 10 6 0.2262 -2.3399 1.2682 11 6 0.4982 -3.3182 2.4153 12 6 0.8132 -4.7001 1.8379 13 7 1.0413 -5.6461 2.9329 14 6 0.8313 -7.0110 2.7311 15 6 0.4050 -7.4718 1.4905 16 6 0.1965 -8.8195 1.2894 17 6 0.4128 -9.7204 2.3309 18 6 0.1895 -11.1718 2.1162 19 7 0.3614 -12.1502 3.0165 20 7 0.0584 -13.2617 2.4365 21 7 -0.2832 -13.0186 1.2195 22 1 -0.5534 -13.6852 0.5687 23 7 -0.2109 -11.7505 1.0014 24 6 0.8401 -9.2565 3.5735 25 6 1.0475 -7.9077 3.7709 26 6 1.5035 -7.4049 5.1163 27 8 1.6483 -8.5081 6.0130 28 6 2.0684 -4.6167 0.9664 29 6 1.8143 -3.6530 -0.1971 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6769 -2.6412 0.7373 32 1 0.0964 -1.3344 1.6685 33 1 -0.3823 -3.3831 3.0545 34 1 1.3476 -2.9662 3.0006 35 1 -0.0269 -5.0409 1.2327 36 1 1.3384 -5.3239 3.7983 37 1 0.2371 -6.7735 0.6840 38 1 -0.1342 -9.1772 0.3255 39 1 1.0078 -9.9529 4.3818 40 1 2.4614 -6.8958 5.0084 41 1 0.7649 -6.7088 5.5135 42 1 1.9404 -8.2580 6.9003 43 1 2.9032 -4.2522 1.5649 44 1 2.3056 -5.6057 0.5743 45 1 1.0407 -4.0613 -0.8475 46 1 2.7334 -3.5131 -0.7660 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606349467.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:12 Heat of formation + Delta-G solvation = 122.235833 kcal Electronic energy + Delta-G solvation = -29406.895560 eV Core-core repulsion = 25334.839120 eV Total energy + Delta-G solvation = -4072.056439 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.47171 -39.98011 -37.92041 -36.77130 -35.42169 -34.29326 -33.40520 -32.27775 -31.50634 -30.52124 -29.70845 -28.48515 -26.24108 -25.14246 -24.59553 -23.80932 -22.57064 -22.24141 -21.06645 -20.77437 -19.42178 -19.12612 -17.79932 -17.17642 -17.05853 -16.82934 -16.19050 -15.50231 -15.18205 -14.83126 -14.48341 -14.13505 -14.05010 -13.78339 -13.75826 -13.60975 -13.41516 -13.01259 -12.78660 -12.67121 -12.35190 -12.25915 -11.63739 -11.54699 -11.45366 -11.33773 -11.29969 -11.12646 -10.99941 -10.77153 -10.66545 -10.56305 -10.42058 -10.33258 -10.13113 -9.89003 -9.65559 -9.43067 -8.77096 -8.53727 -7.27904 -6.76020 -5.86115 -3.28626 0.83053 1.20917 1.44240 2.17013 2.41787 3.33809 3.40222 3.41163 3.46524 3.73743 3.86801 4.02898 4.19635 4.44029 4.81420 5.03169 5.09672 5.21739 5.23161 5.29955 5.30999 5.36141 5.42028 5.46841 5.48297 5.55111 5.68449 5.76405 5.96785 6.10164 6.18089 6.21442 6.26402 6.34429 6.41387 6.43480 6.45880 6.52448 6.57978 6.70792 6.82064 6.88910 7.22239 7.37753 7.45200 7.54204 7.72506 7.76320 8.11043 8.37987 9.14085 9.77091 10.33289 11.22796 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.020114 B = 0.002201 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.746364 B =12717.014220 C =13683.080583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.174 3.826 11 C -0.147 4.147 12 C 0.153 3.847 13 N -0.731 5.731 14 C 0.258 3.742 15 C -0.203 4.203 16 C -0.024 4.024 17 C -0.103 4.103 18 C 0.242 3.758 19 N -0.275 5.275 20 N -0.057 5.057 21 N -0.234 5.234 22 H 0.472 0.528 23 N -0.307 5.307 24 C 0.001 3.999 25 C -0.186 4.186 26 C 0.129 3.871 27 O -0.566 6.566 28 C -0.145 4.145 29 C 0.147 3.853 30 H 0.255 0.745 31 H 0.021 0.979 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.396 0.604 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.141 0.859 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.381 0.619 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.019 0.981 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.144 -20.388 7.079 21.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.049 3.951 13 N -0.355 5.355 14 C 0.150 3.850 15 C -0.226 4.226 16 C -0.045 4.045 17 C -0.109 4.109 18 C -0.037 4.037 19 N -0.148 5.148 20 N -0.052 5.052 21 N -0.079 5.079 22 H 0.326 0.674 23 N -0.159 5.159 24 C -0.020 4.020 25 C -0.191 4.191 26 C 0.052 3.948 27 O -0.371 6.371 28 C -0.185 4.185 29 C 0.020 3.980 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.231 0.769 37 H 0.153 0.847 38 H 0.147 0.853 39 H 0.159 0.841 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.228 0.772 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.037 0.963 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.502 -21.038 6.540 22.037 hybrid contribution 0.531 1.326 0.178 1.439 sum 0.029 -19.712 6.718 20.825 Atomic orbital electron populations 1.70004 1.05255 1.25740 1.53715 1.25054 0.95300 0.98466 1.00745 0.86365 0.78927 0.83283 0.78167 1.20837 1.21611 1.21033 1.19136 0.92568 0.84767 1.41932 0.91701 1.44067 1.35815 1.01638 1.49947 1.20740 0.88857 0.98013 0.87616 1.22521 1.00598 0.94663 1.00866 1.21100 0.97745 0.88730 0.87555 1.45328 1.72304 1.02868 1.15039 1.17779 0.90435 0.84011 0.92782 1.20613 1.09536 0.95650 0.96775 1.20877 0.94081 0.91932 0.97642 1.16920 1.13262 0.84627 0.96086 1.23726 0.98288 0.96493 0.85177 1.76096 1.18723 0.94307 1.25715 1.78860 1.12456 1.21133 0.92774 1.47677 1.43411 1.06044 1.10795 0.67405 1.74950 1.23107 0.91962 1.25872 1.20652 0.91585 0.94597 0.95196 1.18965 1.12315 0.93251 0.94602 1.20604 0.98835 0.88002 0.87408 1.86459 1.91210 1.34095 1.25339 1.22494 0.97580 0.99510 0.98951 1.20884 0.97902 0.86675 0.92581 0.93493 0.96094 0.89049 0.92691 0.92227 0.90538 0.76941 0.84748 0.85291 0.84099 0.92862 0.92869 0.77201 0.92104 0.92659 0.96325 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.28 11.19 55.49 0.62 -24.66 16 2 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 21.05 29.59 -169.99 -5.03 16.02 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.25 -6.70 9.58 -15.05 -0.14 -6.85 16 8 H 0.07 1.69 7.89 -52.49 -0.41 1.27 16 9 N -0.59 -13.97 2.99 -172.32 -0.52 -14.48 16 10 C 0.17 3.85 5.30 -3.71 -0.02 3.83 16 11 C -0.15 -2.48 5.55 -26.61 -0.15 -2.63 16 12 C 0.15 2.28 2.11 -67.89 -0.14 2.14 16 13 N -0.73 -9.17 5.17 -52.10 -0.27 -9.44 16 14 C 0.26 3.29 6.62 -83.76 -0.55 2.74 16 15 C -0.20 -2.59 8.82 -39.43 -0.35 -2.94 16 16 C -0.02 -0.30 9.69 -39.29 -0.38 -0.68 16 17 C -0.10 -1.34 5.88 -104.86 -0.62 -1.96 16 18 C 0.24 3.15 7.93 -156.29 -1.24 1.91 16 19 N -0.28 -3.70 12.23 32.15 0.39 -3.30 16 20 N -0.06 -0.63 13.47 60.35 0.81 0.18 16 21 N -0.23 -1.97 7.90 60.35 0.48 -1.50 16 22 H 0.47 1.59 8.96 -340.36 -3.05 -1.47 16 23 N -0.31 -3.45 12.08 32.17 0.39 -3.06 16 24 C 0.00 0.01 9.02 -39.30 -0.35 -0.35 16 25 C -0.19 -2.29 5.89 -104.47 -0.62 -2.90 16 26 C 0.13 1.26 6.17 36.00 0.22 1.49 16 27 O -0.57 -5.42 12.13 -35.23 -0.43 -5.85 16 28 C -0.14 -2.32 5.58 -26.61 -0.15 -2.47 16 29 C 0.15 2.87 6.52 -3.71 -0.02 2.85 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.09 2.29 6.06 -51.93 -0.31 1.98 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.18 6.47 -51.93 -0.34 0.85 16 36 H 0.40 4.40 7.27 -40.82 -0.30 4.11 16 37 H 0.13 1.70 6.11 -52.49 -0.32 1.38 16 38 H 0.13 1.42 7.88 -52.49 -0.41 1.00 16 39 H 0.14 1.90 6.82 -52.48 -0.36 1.54 16 40 H 0.05 0.47 8.05 -51.93 -0.42 0.06 16 41 H 0.05 0.47 8.05 -51.93 -0.42 0.05 16 42 H 0.38 1.81 9.12 45.56 0.42 2.22 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.05 0.81 7.71 -51.93 -0.40 0.41 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 LS Contribution 374.99 15.07 5.65 5.65 Total: -1.00 -32.16 374.99 -10.48 -42.64 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.99 Total: 3.63 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -4.60 Total: -5.83 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 1.91 Total: -56.26 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.43 Total: -5.85 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.16 -10.48 -42.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606349467.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.878 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds