Wall clock time and date at job start Wed Apr 1 2020 04:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00196 * 2 1 4 4 H 1.48500 * 109.46908 * 240.00096 * 3 2 1 5 5 H 1.48505 * 109.46949 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47258 * 119.99866 * 3 2 1 7 7 C 1.38819 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99960 * 163.07471 * 7 2 1 9 9 N 1.36942 * 119.99910 * 343.07277 * 7 2 1 10 10 C 1.46921 * 120.63192 * 331.83707 * 9 7 2 11 11 C 1.53193 * 108.77484 * 233.63256 * 10 9 7 12 12 C 1.53041 * 109.30827 * 305.36337 * 11 10 9 13 13 N 1.46500 * 109.45862 * 181.39067 * 12 11 10 14 14 C 1.39561 * 120.00039 * 155.00441 * 13 12 11 15 15 C 1.39031 * 119.95660 * 359.97029 * 14 13 12 16 16 C 1.37849 * 120.04085 * 180.02562 * 15 14 13 17 17 C 1.39392 * 119.95639 * 0.02562 * 16 15 14 18 18 C 1.48414 * 120.04248 * 180.02562 * 17 16 15 19 19 N 1.34062 * 126.67685 * 179.66056 * 18 17 16 20 20 N 1.28989 * 107.26482 * 179.83657 * 19 18 17 21 21 N 1.28727 * 108.94704 * 0.43939 * 20 19 18 22 22 H 0.97002 * 125.33599 * 179.75843 * 21 20 19 23 23 N 1.28872 * 109.32760 * 359.71861 * 21 20 19 24 24 C 1.39346 * 119.91461 * 359.97438 * 17 16 15 25 25 C 1.37885 * 119.96235 * 0.02562 * 24 17 16 26 26 C 1.50693 * 119.98303 * 179.72281 * 25 24 17 27 27 O 1.42902 * 109.47203 * 359.97438 * 26 25 24 28 28 C 1.53034 * 109.54157 * 61.36802 * 12 11 10 29 29 C 1.46921 * 120.62604 * 151.86022 * 9 7 2 30 30 H 0.97000 * 120.00096 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.58390 * 113.84079 * 10 9 7 32 32 H 1.09001 * 109.70511 * 353.48744 * 10 9 7 33 33 H 1.08997 * 109.49601 * 185.41803 * 11 10 9 34 34 H 1.08993 * 109.52624 * 65.32959 * 11 10 9 35 35 H 1.08999 * 109.46188 * 301.35920 * 12 11 10 36 36 H 0.97006 * 119.99761 * 334.99280 * 13 12 11 37 37 H 1.07994 * 119.98204 * 0.02800 * 15 14 13 38 38 H 1.08000 * 120.02276 * 180.02562 * 16 15 14 39 39 H 1.08007 * 120.02178 * 179.97438 * 24 17 16 40 40 H 1.09006 * 109.47297 * 119.99724 * 26 25 24 41 41 H 1.08995 * 109.47408 * 239.99806 * 26 25 24 42 42 H 0.96703 * 114.00272 * 179.97438 * 27 26 25 43 43 H 1.08999 * 109.49660 * 58.58025 * 28 12 11 44 44 H 1.09002 * 109.50526 * 178.68464 * 28 12 11 45 45 H 1.09005 * 109.58469 * 246.15863 * 29 9 7 46 46 H 1.08997 * 109.59192 * 6.43250 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2226 -0.2717 9 7 1.3700 -2.3623 0.3464 10 6 0.2262 -2.3399 1.2682 11 6 0.4982 -3.3182 2.4153 12 6 0.8132 -4.7001 1.8379 13 7 1.0413 -5.6461 2.9329 14 6 0.8313 -7.0110 2.7311 15 6 0.4050 -7.4718 1.4905 16 6 0.1965 -8.8195 1.2894 17 6 0.4128 -9.7204 2.3309 18 6 0.1895 -11.1718 2.1162 19 7 0.3614 -12.1502 3.0165 20 7 0.0584 -13.2617 2.4365 21 7 -0.2832 -13.0186 1.2195 22 1 -0.5534 -13.6852 0.5687 23 7 -0.2109 -11.7505 1.0014 24 6 0.8401 -9.2565 3.5735 25 6 1.0475 -7.9077 3.7709 26 6 1.5035 -7.4049 5.1163 27 8 1.6483 -8.5081 6.0130 28 6 2.0684 -4.6167 0.9664 29 6 1.8143 -3.6530 -0.1971 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6769 -2.6412 0.7373 32 1 0.0964 -1.3344 1.6685 33 1 -0.3823 -3.3831 3.0545 34 1 1.3476 -2.9662 3.0006 35 1 -0.0269 -5.0409 1.2327 36 1 1.3384 -5.3239 3.7983 37 1 0.2371 -6.7735 0.6840 38 1 -0.1342 -9.1772 0.3255 39 1 1.0078 -9.9529 4.3818 40 1 2.4614 -6.8958 5.0084 41 1 0.7649 -6.7088 5.5135 42 1 1.9404 -8.2580 6.9003 43 1 2.9032 -4.2522 1.5649 44 1 2.3056 -5.6057 0.5743 45 1 1.0407 -4.0613 -0.8475 46 1 2.7334 -3.5131 -0.7660 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606349467.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:11 Heat of formation + Delta-G solvation = 99.128742 kcal Electronic energy + Delta-G solvation = -29407.897558 eV Core-core repulsion = 25334.839120 eV Total energy + Delta-G solvation = -4073.058438 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.34306 -40.97704 -39.28427 -37.51636 -36.72148 -35.23309 -34.61153 -33.66680 -32.51596 -31.95730 -31.23209 -29.66488 -27.08129 -26.81648 -25.45704 -24.91052 -23.90856 -23.69450 -22.31721 -21.71168 -20.76962 -20.05617 -18.89940 -18.43076 -18.03903 -17.92374 -17.12940 -16.92405 -16.46094 -15.93327 -15.60413 -15.45057 -15.31139 -14.98284 -14.85518 -14.80077 -14.71085 -14.51441 -13.85334 -13.80767 -13.71496 -13.16973 -13.13500 -12.96031 -12.63119 -12.55460 -12.51940 -12.33355 -12.25383 -12.17984 -12.01478 -11.99394 -11.79096 -11.66870 -11.45871 -11.25373 -11.10475 -10.59951 -10.49171 -9.69168 -8.67539 -8.26890 -7.86826 -5.31291 -0.07325 0.30065 0.49275 1.45583 1.48777 1.50242 1.52812 1.57042 2.39804 2.52669 2.83924 2.91512 3.28942 3.29304 3.35874 3.70624 3.87752 4.00205 4.09821 4.13133 4.27864 4.37578 4.41880 4.42690 4.51290 4.57788 4.60815 4.61321 4.70449 4.79749 4.87207 4.96229 5.04274 5.14260 5.16014 5.21656 5.34760 5.37349 5.47249 5.52351 5.59491 5.66658 5.70519 5.74672 5.84988 6.32131 6.41260 6.80230 6.99429 7.16868 7.22501 7.87918 8.38539 9.19615 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.020114 B = 0.002201 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.746364 B =12717.014220 C =13683.080583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.049 4.049 3 Si 0.964 3.036 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.278 1.278 7 C -0.262 4.262 8 H 0.065 0.935 9 N -0.610 5.610 10 C 0.179 3.821 11 C -0.131 4.131 12 C 0.167 3.833 13 N -0.723 5.723 14 C 0.251 3.749 15 C -0.208 4.208 16 C -0.025 4.025 17 C -0.108 4.108 18 C 0.227 3.773 19 N -0.302 5.302 20 N -0.061 5.061 21 N -0.204 5.204 22 H 0.493 0.507 23 N -0.307 5.307 24 C -0.010 4.010 25 C -0.185 4.185 26 C 0.129 3.871 27 O -0.583 6.583 28 C -0.130 4.130 29 C 0.143 3.857 30 H 0.250 0.750 31 H 0.001 0.999 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.405 0.595 37 H 0.135 0.865 38 H 0.140 0.860 39 H 0.134 0.866 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.401 0.599 43 H 0.056 0.944 44 H 0.074 0.926 45 H 0.018 0.982 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.533 -21.716 7.697 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.244 4.244 3 Si 0.792 3.208 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.204 1.204 7 C -0.392 4.392 8 H 0.082 0.918 9 N -0.334 5.334 10 C 0.053 3.947 11 C -0.170 4.170 12 C 0.062 3.938 13 N -0.349 5.349 14 C 0.144 3.856 15 C -0.231 4.231 16 C -0.046 4.046 17 C -0.114 4.114 18 C -0.052 4.052 19 N -0.175 5.175 20 N -0.056 5.056 21 N -0.055 5.055 22 H 0.351 0.649 23 N -0.160 5.160 24 C -0.031 4.031 25 C -0.190 4.190 26 C 0.052 3.948 27 O -0.391 6.391 28 C -0.170 4.170 29 C 0.017 3.983 30 H 0.059 0.941 31 H 0.019 0.981 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.242 0.758 37 H 0.153 0.847 38 H 0.158 0.842 39 H 0.152 0.848 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.251 0.749 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.036 0.964 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.195 -22.427 7.187 23.551 hybrid contribution 0.295 1.569 -0.080 1.599 sum 0.491 -20.858 7.107 22.041 Atomic orbital electron populations 1.70154 1.06526 1.25909 1.55344 1.25755 0.96019 1.01349 1.01318 0.85397 0.77605 0.79486 0.78287 1.20326 1.22152 1.20416 1.19444 0.92776 0.86050 1.40944 0.91761 1.44328 1.35936 1.02305 1.50800 1.20542 0.87887 0.97578 0.88722 1.22242 1.01469 0.94450 0.98880 1.20739 0.97095 0.88082 0.87902 1.44968 1.72824 1.02408 1.14734 1.17789 0.90960 0.83877 0.92992 1.20704 1.09583 0.95862 0.96945 1.20960 0.93986 0.91708 0.97963 1.17073 1.13018 0.84965 0.96316 1.23799 0.99140 0.96653 0.85624 1.76079 1.19912 0.94842 1.26629 1.78798 1.12721 1.20541 0.93502 1.47737 1.41332 1.05841 1.10562 0.64884 1.74909 1.22868 0.92809 1.25369 1.20661 0.92353 0.94932 0.95129 1.19219 1.11232 0.92819 0.95699 1.20640 0.99731 0.88081 0.86391 1.86415 1.91447 1.34505 1.26777 1.22297 0.97896 0.99207 0.97585 1.21016 0.97486 0.85795 0.94024 0.94087 0.98137 0.92471 0.90832 0.92147 0.90706 0.75812 0.84687 0.84234 0.84823 0.91632 0.91535 0.74869 0.92532 0.90728 0.96391 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.59 11.19 21.65 0.24 -53.35 16 2 C -0.05 -2.65 4.92 84.86 0.42 -2.23 16 3 Si 0.96 43.69 29.59 68.60 2.03 45.72 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.26 -13.91 9.58 84.03 0.81 -13.10 16 8 H 0.06 3.35 7.89 -2.91 -0.02 3.32 16 9 N -0.61 -28.97 2.99 -699.10 -2.09 -31.07 16 10 C 0.18 8.02 5.30 86.36 0.46 8.47 16 11 C -0.13 -4.27 5.55 30.67 0.17 -4.10 16 12 C 0.17 4.67 2.11 45.02 0.09 4.77 16 13 N -0.72 -16.34 5.17 -318.76 -1.65 -17.99 16 14 C 0.25 5.88 6.62 38.28 0.25 6.13 16 15 C -0.21 -4.95 8.82 22.37 0.20 -4.75 16 16 C -0.03 -0.59 9.69 22.46 0.22 -0.37 16 17 C -0.11 -2.70 5.88 -20.02 -0.12 -2.82 16 18 C 0.23 5.68 7.93 137.35 1.09 6.76 16 19 N -0.30 -7.88 12.23 -52.20 -0.64 -8.51 16 20 N -0.06 -1.27 13.47 37.02 0.50 -0.77 16 21 N -0.20 -3.06 7.90 37.02 0.29 -2.77 16 22 H 0.49 2.18 8.96 -347.53 -3.12 -0.94 16 23 N -0.31 -6.38 12.08 -52.15 -0.63 -7.01 16 24 C -0.01 -0.25 9.02 22.45 0.20 -0.04 16 25 C -0.18 -4.20 5.89 -19.77 -0.12 -4.31 16 26 C 0.13 2.22 6.17 71.23 0.44 2.66 16 27 O -0.58 -10.06 12.13 -148.98 -1.81 -11.87 16 28 C -0.13 -3.92 5.58 30.67 0.17 -3.75 16 29 C 0.14 5.51 6.52 86.36 0.56 6.08 16 30 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 31 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.06 2.95 6.06 -2.39 -0.01 2.93 16 33 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 2.18 6.47 -2.39 -0.02 2.16 16 36 H 0.41 7.82 7.27 -92.70 -0.67 7.14 16 37 H 0.14 3.17 6.11 -2.91 -0.02 3.15 16 38 H 0.14 2.85 7.88 -2.91 -0.02 2.83 16 39 H 0.13 3.53 6.82 -2.91 -0.02 3.51 16 40 H 0.07 0.98 8.05 -2.38 -0.02 0.96 16 41 H 0.07 0.98 8.05 -2.39 -0.02 0.96 16 42 H 0.40 2.95 9.12 -74.05 -0.68 2.27 16 43 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.07 2.00 7.71 -2.39 -0.02 1.98 16 45 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 46 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 Total: -1.00 -69.69 374.99 -2.31 -72.00 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -3.40 Total: 16.22 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 4.85 Total: -0.61 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -3.98 Total: -121.47 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -1.81 Total: -11.87 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -69.69 -2.31 -72.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606349467.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.132 kcal (2) G-P(sol) polarization free energy of solvation -69.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds