Wall clock time and date at job start Wed Apr 1 2020 03:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81404 * 109.46984 * 2 1 4 4 O 1.42099 * 108.57906 * 65.50997 * 3 2 1 5 5 O 1.42100 * 108.57498 * 294.48512 * 3 2 1 6 6 C 1.81396 * 101.92087 * 179.97438 * 3 2 1 7 7 C 1.53006 * 109.46949 * 179.97438 * 6 3 2 8 8 N 1.46896 * 109.46995 * 179.97438 * 7 6 3 9 9 C 1.46898 * 111.00207 * 66.04551 * 8 7 6 10 10 C 1.38586 * 110.99970 * 190.00066 * 8 7 6 11 11 N 1.31221 * 126.47210 * 302.90464 * 10 8 7 12 12 N 1.28526 * 109.85671 * 179.69364 * 11 10 8 13 13 C 1.30291 * 110.05643 * 0.45067 * 12 11 10 14 14 C 1.50696 * 126.34676 * 179.82283 * 13 12 11 15 15 H 1.08997 * 109.47408 * 179.69102 * 14 13 12 16 16 C 1.52999 * 109.47306 * 59.68923 * 14 13 12 17 17 C 1.53001 * 109.47334 * 299.68795 * 14 13 12 18 18 C 1.50702 * 109.47583 * 185.00133 * 17 14 13 19 19 H 1.07996 * 119.99255 * 359.97438 * 18 17 14 20 20 C 1.37875 * 120.00193 * 179.97438 * 18 17 14 21 21 N 1.31512 * 120.00052 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99851 * 0.02562 * 20 18 17 23 23 H 1.48507 * 109.47118 * 90.00298 * 22 20 18 24 24 H 1.48498 * 109.47034 * 209.99775 * 22 20 18 25 25 H 1.48498 * 109.47470 * 329.99721 * 22 20 18 26 26 N 1.36450 * 126.47577 * 122.86336 * 10 8 7 27 27 C 1.46498 * 127.13492 * 0.02562 * 26 10 8 28 28 H 1.08997 * 109.47452 * 299.99992 * 1 2 3 29 29 H 1.09000 * 109.47076 * 60.00411 * 1 2 3 30 30 H 1.09002 * 109.46784 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47452 * 240.00008 * 2 1 3 32 32 H 1.09000 * 109.47076 * 119.99589 * 2 1 3 33 33 H 1.09000 * 109.47315 * 60.00268 * 6 3 2 34 34 H 1.08995 * 109.47252 * 299.99723 * 6 3 2 35 35 H 1.09000 * 109.46795 * 60.00070 * 7 6 3 36 36 H 1.08995 * 109.47016 * 299.99988 * 7 6 3 37 37 H 1.09000 * 109.47511 * 177.59302 * 9 8 7 38 38 H 1.08997 * 109.47209 * 297.59385 * 9 8 7 39 39 H 1.09001 * 109.47080 * 57.59334 * 9 8 7 40 40 H 1.09004 * 109.47454 * 180.02562 * 16 14 13 41 41 H 1.08999 * 109.47024 * 299.99859 * 16 14 13 42 42 H 1.08991 * 109.47217 * 59.99688 * 16 14 13 43 43 H 1.09002 * 109.47264 * 64.99642 * 17 14 13 44 44 H 1.09009 * 109.47334 * 305.00240 * 17 14 13 45 45 H 0.97000 * 120.00022 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.47697 * 263.83478 * 27 26 10 47 47 H 1.09005 * 109.47324 * 23.83668 * 27 26 10 48 48 H 1.09002 * 109.46970 * 143.83563 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.7591 2.3233 1.2258 5 8 1.7592 2.3232 -1.2258 6 6 3.9329 1.4720 0.0008 7 6 4.6279 2.8351 0.0002 8 7 6.0842 2.6421 0.0015 9 6 6.5339 2.0200 -1.2509 10 6 6.7437 3.8401 0.2257 11 7 6.6318 4.9372 -0.4856 12 7 7.3814 5.8566 0.0092 13 6 8.0179 5.4017 1.0510 14 6 8.9941 6.1678 1.9061 15 1 9.3588 5.5243 2.7067 16 6 8.2951 7.3873 2.5103 17 6 10.1724 6.6294 1.0461 18 6 11.2065 7.2879 1.9226 19 1 11.0396 7.3695 2.9864 20 6 12.3653 7.7863 1.3662 21 7 13.2675 8.3615 2.1310 22 14 12.6534 7.6458 -0.4741 23 1 12.1050 8.8468 -1.1541 24 1 14.1110 7.5483 -0.7409 25 1 11.9733 6.4308 -0.9903 26 7 7.6315 4.1021 1.2283 27 6 8.0779 3.1819 2.2772 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.2260 0.9148 -0.8890 34 1 4.2252 0.9151 0.8910 35 1 4.3349 3.3926 0.8898 36 1 4.3356 3.3916 -0.8901 37 1 7.6199 1.9276 -1.2413 38 1 6.0860 1.0309 -1.3466 39 1 6.2295 2.6398 -2.0943 40 1 9.0014 7.9417 3.1284 41 1 7.9305 8.0308 1.7097 42 1 7.4558 7.0585 3.1229 43 1 9.8207 7.3424 0.3005 44 1 10.6157 5.7688 0.5450 45 1 14.0830 8.7118 1.7396 46 1 7.4856 3.3428 3.1779 47 1 7.9503 2.1541 1.9373 48 1 9.1299 3.3641 2.4967 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646685969.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:58 Heat of formation + Delta-G solvation = 13.819860 kcal Electronic energy + Delta-G solvation = -28352.867376 eV Core-core repulsion = 24379.260867 eV Total energy + Delta-G solvation = -3973.606509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.79061 -38.18402 -37.41540 -36.46624 -35.48761 -34.60597 -33.72628 -32.36880 -31.80851 -28.99962 -27.68234 -27.38217 -26.64372 -24.84594 -24.04918 -23.07215 -21.65707 -20.67806 -19.33593 -19.15889 -17.86570 -17.13552 -16.89056 -16.81023 -16.41219 -16.20295 -15.91003 -15.28000 -14.96393 -14.79822 -14.35944 -14.08875 -13.76484 -13.65204 -13.47948 -13.28605 -13.11611 -12.89914 -12.79508 -12.63169 -12.51051 -12.41859 -12.28003 -12.13168 -11.97320 -11.80543 -11.44187 -11.39635 -11.21748 -11.12478 -10.90851 -10.87804 -10.52274 -10.09905 -10.03887 -9.90696 -9.82075 -9.21101 -9.08564 -8.64406 -8.56220 -6.08005 -4.06755 -0.57787 1.87967 2.23503 2.29639 3.05839 3.11271 3.32757 3.39740 3.45601 3.48490 3.59343 3.99107 4.04876 4.06825 4.33696 4.44361 4.62224 4.67826 4.78848 4.83942 4.86159 4.96433 5.04136 5.07629 5.12969 5.15360 5.22506 5.26038 5.34584 5.38391 5.44445 5.51136 5.61446 5.90693 5.95753 6.11304 6.15039 6.24851 6.59601 6.65436 6.68834 6.97594 7.15917 7.23402 7.34876 7.71890 8.45881 8.94295 8.98498 9.54350 11.04507 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.027189 B = 0.002149 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.572132 B =13023.859696 C =13267.312073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.612 4.612 3 S 2.418 3.582 4 O -0.932 6.932 5 O -0.932 6.932 6 C -0.615 4.615 7 C 0.079 3.921 8 N -0.454 5.454 9 C 0.027 3.973 10 C 0.310 3.690 11 N -0.307 5.307 12 N -0.286 5.286 13 C 0.217 3.783 14 C 0.007 3.993 15 H 0.080 0.920 16 C -0.128 4.128 17 C 0.001 3.999 18 C -0.519 4.519 19 H 0.077 0.923 20 C 0.071 3.929 21 N -0.900 5.900 22 Si 0.876 3.124 23 H -0.274 1.274 24 H -0.288 1.288 25 H -0.267 1.267 26 N -0.468 5.468 27 C 0.078 3.922 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.035 0.965 43 H 0.027 0.973 44 H 0.013 0.987 45 H 0.264 0.736 46 H 0.079 0.921 47 H 0.092 0.908 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.760 -23.051 -2.197 31.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.741 4.741 3 S 2.598 3.402 4 O -0.929 6.929 5 O -0.929 6.929 6 C -0.743 4.743 7 C -0.050 4.050 8 N -0.180 5.180 9 C -0.120 4.120 10 C -0.046 4.046 11 N -0.151 5.151 12 N -0.126 5.126 13 C -0.050 4.050 14 C -0.015 4.015 15 H 0.099 0.901 16 C -0.186 4.186 17 C -0.037 4.037 18 C -0.557 4.557 19 H 0.095 0.905 20 C -0.131 4.131 21 N -0.539 5.539 22 Si 0.703 3.297 23 H -0.200 1.200 24 H -0.214 1.214 25 H -0.192 1.192 26 N -0.160 5.160 27 C -0.065 4.065 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.161 0.839 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.054 0.946 43 H 0.046 0.954 44 H 0.032 0.968 45 H 0.073 0.927 46 H 0.098 0.902 47 H 0.111 0.889 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -22.406 -21.583 -2.882 31.244 hybrid contribution 1.151 -1.546 -0.562 2.008 sum -21.255 -23.129 -3.444 31.601 Atomic orbital electron populations 1.21530 0.90209 1.04977 1.03949 1.30199 1.07677 1.24597 1.11636 1.08185 0.77962 0.78383 0.75655 1.93613 1.80824 1.72967 1.45517 1.93617 1.80799 1.72952 1.45491 1.30507 1.24532 1.06840 1.12441 1.21734 0.85902 0.92988 1.04340 1.58532 1.04400 1.17908 1.37145 1.22539 1.01837 0.99172 0.88480 1.22066 0.97645 0.93402 0.91521 1.74545 1.19478 0.97647 1.23472 1.74058 1.08149 1.22185 1.08215 1.25742 0.99802 0.81501 0.97917 1.19810 0.91683 0.94839 0.95128 0.90146 1.21694 0.99182 0.96902 1.00804 1.19600 0.91881 0.96592 0.95662 1.21009 1.01339 1.37646 0.95699 0.90497 1.24941 0.95845 0.94517 0.97756 1.69895 1.09276 1.39253 1.35464 0.86837 0.77060 0.79420 0.86363 1.19977 1.21439 1.19198 1.46264 1.33617 1.12392 1.23761 1.22040 1.01959 0.93251 0.89243 0.90694 0.90695 0.89959 0.84904 0.84854 0.84526 0.83854 0.88867 0.90875 0.90730 0.90044 0.93091 0.90025 0.92046 0.94625 0.95430 0.96838 0.92656 0.90239 0.88923 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.92 37.16 0.37 -0.23 16 2 C -0.61 -1.79 6.53 37.16 0.24 -1.55 16 3 S 2.42 16.26 4.72 -107.50 -0.51 15.75 16 4 O -0.93 -9.89 18.10 -57.83 -1.05 -10.94 16 5 O -0.93 -9.86 18.10 -57.83 -1.05 -10.90 16 6 C -0.61 -3.23 5.73 37.16 0.21 -3.02 16 7 C 0.08 0.80 4.84 -3.82 -0.02 0.79 16 8 N -0.45 -5.19 4.73 -182.38 -0.86 -6.05 16 9 C 0.03 0.26 9.22 60.06 0.55 0.81 16 10 C 0.31 4.87 6.41 -318.87 -2.04 2.82 16 11 N -0.31 -5.88 12.14 30.32 0.37 -5.51 16 12 N -0.29 -6.02 12.18 32.99 0.40 -5.62 16 13 C 0.22 4.12 6.58 -154.02 -1.01 3.10 16 14 C 0.01 0.13 2.71 -91.77 -0.25 -0.12 16 15 H 0.08 1.43 7.10 -51.93 -0.37 1.06 16 16 C -0.13 -2.37 8.99 37.16 0.33 -2.03 16 17 C 0.00 0.02 3.50 -27.88 -0.10 -0.07 16 18 C -0.52 -14.09 8.96 -34.44 -0.31 -14.40 16 19 H 0.08 2.18 7.30 -52.49 -0.38 1.80 16 20 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 21 N -0.90 -27.06 13.96 55.43 0.77 -26.28 16 22 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 23 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 26 N -0.47 -7.30 3.21 -121.46 -0.39 -7.69 16 27 C 0.08 0.84 10.80 59.85 0.65 1.49 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.13 0.09 8.14 -51.93 -0.42 -0.33 16 32 H 0.13 0.10 8.14 -51.92 -0.42 -0.32 16 33 H 0.14 0.36 6.61 -51.92 -0.34 0.02 16 34 H 0.14 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 1.03 8.05 -51.93 -0.42 0.61 16 36 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 37 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 38 H 0.08 0.47 6.58 -51.93 -0.34 0.12 16 39 H 0.05 0.53 8.12 -51.93 -0.42 0.11 16 40 H 0.08 1.58 6.95 -51.93 -0.36 1.22 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.03 0.69 7.57 -51.93 -0.39 0.29 16 44 H 0.01 0.33 7.20 -51.92 -0.37 -0.05 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 48 H 0.09 0.98 7.51 -51.93 -0.39 0.59 16 LS Contribution 403.87 15.07 6.09 6.09 Total: -1.00 -39.23 403.87 -10.39 -49.62 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -8.03 Total: -5.24 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -1.47 Total: -10.49 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.29 Total: -51.16 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -2.09 Total: -21.84 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Atomic # 16 Polarization: 16.26 SS G_CDS: -0.51 Total: 15.75 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -39.23 -10.39 -49.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646685969.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.437 kcal (2) G-P(sol) polarization free energy of solvation -39.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds