Wall clock time and date at job start Wed Apr 1 2020 03:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47170 * 2 1 4 4 C 1.50701 * 109.46709 * 240.00089 * 2 1 3 5 5 H 1.07996 * 119.99914 * 275.03267 * 4 2 1 6 6 C 1.37872 * 119.99817 * 95.04050 * 4 2 1 7 7 N 1.31516 * 119.99973 * 184.82587 * 6 4 2 8 8 Si 1.86801 * 120.00419 * 4.82268 * 6 4 2 9 9 H 1.48499 * 109.46815 * 84.66238 * 8 6 4 10 10 H 1.48497 * 109.47235 * 204.66506 * 8 6 4 11 11 H 1.48497 * 109.46849 * 324.66971 * 8 6 4 12 12 N 1.46898 * 109.46903 * 120.00161 * 2 1 3 13 13 C 1.46899 * 110.99837 * 176.04157 * 12 2 1 14 14 C 1.38568 * 111.00271 * 299.99603 * 12 2 1 15 15 N 1.31222 * 126.47527 * 359.69198 * 14 12 2 16 16 N 1.28523 * 109.86299 * 179.81665 * 15 14 12 17 17 C 1.30298 * 110.05519 * 0.45843 * 16 15 14 18 18 C 1.50703 * 126.34837 * 179.76343 * 17 16 15 19 19 S 1.81399 * 109.46613 * 269.95128 * 18 17 16 20 20 O 1.42097 * 108.58027 * 294.48330 * 19 18 17 21 21 O 1.42103 * 108.57917 * 65.51335 * 19 18 17 22 22 C 1.81404 * 101.91779 * 179.97438 * 19 18 17 23 23 C 1.53006 * 109.46982 * 60.00302 * 22 19 18 24 24 C 1.52999 * 109.47154 * 179.97438 * 22 19 18 25 25 C 1.53000 * 109.47309 * 300.00039 * 22 19 18 26 26 N 1.36457 * 126.47626 * 179.97438 * 14 12 2 27 27 C 1.46503 * 127.13473 * 359.97438 * 26 14 12 28 28 H 1.09008 * 109.47122 * 295.63015 * 1 2 3 29 29 H 1.09003 * 109.46877 * 55.62082 * 1 2 3 30 30 H 1.08999 * 109.47616 * 175.62875 * 1 2 3 31 31 H 0.97008 * 120.00454 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47127 * 183.95556 * 13 12 2 33 33 H 1.08998 * 109.47623 * 303.95547 * 13 12 2 34 34 H 1.09002 * 109.46925 * 63.95697 * 13 12 2 35 35 H 1.08996 * 109.46754 * 29.94843 * 18 17 16 36 36 H 1.08991 * 109.46640 * 149.95072 * 18 17 16 37 37 H 1.08996 * 109.47441 * 59.99329 * 23 22 19 38 38 H 1.08994 * 109.47086 * 180.02562 * 23 22 19 39 39 H 1.09006 * 109.46708 * 299.99713 * 23 22 19 40 40 H 1.09006 * 109.46646 * 60.00119 * 24 22 19 41 41 H 1.09001 * 109.47516 * 180.02562 * 24 22 19 42 42 H 1.09001 * 109.47788 * 300.00709 * 24 22 19 43 43 H 1.09000 * 109.46851 * 59.99797 * 25 22 19 44 44 H 1.08998 * 109.46793 * 179.97438 * 25 22 19 45 45 H 1.08995 * 109.46686 * 299.99967 * 25 22 19 46 46 H 1.08998 * 109.46641 * 90.02082 * 27 26 14 47 47 H 1.08997 * 109.47060 * 210.02208 * 27 26 14 48 48 H 1.09003 * 109.47057 * 330.02177 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.1348 -1.7855 -1.2293 6 6 2.3609 0.0122 -2.3578 7 7 2.7082 -0.6129 -3.4615 8 14 2.3128 1.8791 -2.3175 9 1 3.5958 2.3957 -1.7771 10 1 2.1102 2.3989 -3.6937 11 1 1.1941 2.3268 -1.4496 12 7 2.0196 -0.6925 1.1994 13 6 3.4850 -0.7947 1.1870 14 6 1.5754 -0.0642 2.3518 15 7 0.8234 1.0093 2.4146 16 7 0.6002 1.3149 3.6429 17 6 1.1996 0.4672 4.4302 18 6 1.1863 0.4846 5.9371 19 16 2.5779 1.4784 6.5425 20 8 3.7890 0.8267 6.1852 21 8 2.3745 2.8288 6.1496 22 6 2.3670 1.3622 8.3405 23 6 2.4452 -0.1044 8.7694 24 6 3.4744 2.1562 9.0362 25 6 1.0039 1.9362 8.7323 26 7 1.8417 -0.4418 3.6358 27 6 2.6481 -1.5843 4.0725 28 1 -0.3634 0.4446 0.9266 29 1 -0.3633 0.5803 -0.8482 30 1 -0.3634 -1.0246 -0.0783 31 1 2.9391 -0.1046 -4.2548 32 1 3.8163 -1.3723 2.0499 33 1 3.8069 -1.2916 0.2718 34 1 3.9192 0.2042 1.2300 35 1 0.2500 0.9191 6.2871 36 1 1.2769 -0.5345 6.3129 37 1 3.4162 -0.5134 8.4902 38 1 2.3180 -0.1743 9.8496 39 1 1.6565 -0.6704 8.2737 40 1 3.4191 3.2011 8.7306 41 1 3.3480 2.0861 10.1166 42 1 4.4453 1.7470 8.7571 43 1 0.2153 1.3702 8.2366 44 1 0.8771 1.8659 9.8126 45 1 0.9483 2.9810 8.4267 46 1 3.6875 -1.2749 4.1812 47 1 2.2749 -1.9475 5.0300 48 1 2.5816 -2.3805 3.3310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646697689.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:14 Heat of formation + Delta-G solvation = 30.963525 kcal Electronic energy + Delta-G solvation = -29935.715234 eV Core-core repulsion = 25962.852131 eV Total energy + Delta-G solvation = -3972.863103 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.78455 -37.41680 -37.30010 -37.11850 -36.26054 -34.99777 -32.97166 -32.01528 -30.07834 -28.58709 -28.01485 -27.83430 -27.16338 -25.29752 -24.44030 -22.32174 -21.92655 -20.82110 -19.53534 -18.82077 -17.47329 -17.28014 -16.97634 -16.39400 -16.15635 -15.94935 -15.35638 -14.97922 -14.78116 -14.66532 -14.31972 -13.98387 -13.81833 -13.64336 -13.35857 -13.19906 -12.94758 -12.88699 -12.75353 -12.49889 -12.41638 -12.31331 -12.29494 -12.16586 -11.85463 -11.75630 -11.63253 -11.50573 -11.16304 -10.96137 -10.75630 -10.57428 -10.55666 -10.45128 -10.17972 -9.96012 -9.71393 -9.54128 -8.87561 -8.64740 -7.59839 -6.19163 -4.20811 -0.49253 1.96314 2.32547 2.39606 3.08043 3.28127 3.29427 3.36879 3.46415 3.53148 3.85372 3.92010 3.97801 4.29952 4.32087 4.36128 4.43497 4.61066 4.84569 4.85610 4.94329 5.04621 5.08975 5.10458 5.14572 5.15796 5.17578 5.36938 5.43510 5.45816 5.52124 5.55495 5.57774 5.89974 5.96195 6.12672 6.43540 6.47778 6.68409 6.76139 6.92624 7.01451 7.26356 7.45949 7.61040 7.86884 8.46705 8.86083 9.04556 9.42752 10.92195 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.023349 B = 0.003008 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.897957 B = 9306.586125 C = 9476.319845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.193 3.807 3 H 0.025 0.975 4 C -0.512 4.512 5 H 0.084 0.916 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.864 3.136 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.256 1.256 12 N -0.446 5.446 13 C 0.030 3.970 14 C 0.399 3.601 15 N -0.318 5.318 16 N -0.249 5.249 17 C 0.131 3.869 18 C -0.511 4.511 19 S 2.415 3.585 20 O -0.929 6.929 21 O -0.914 6.914 22 C -0.541 4.541 23 C -0.143 4.143 24 C -0.138 4.138 25 C -0.144 4.144 26 N -0.483 5.483 27 C 0.069 3.931 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.267 0.733 32 H 0.055 0.945 33 H 0.110 0.890 34 H 0.031 0.969 35 H 0.162 0.838 36 H 0.144 0.856 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.339 -0.964 28.634 28.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.089 3.911 3 H 0.043 0.957 4 C -0.551 4.551 5 H 0.102 0.898 6 C -0.123 4.123 7 N -0.526 5.526 8 Si 0.690 3.310 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.181 1.181 12 N -0.170 5.170 13 C -0.117 4.117 14 C 0.043 3.957 15 N -0.165 5.165 16 N -0.091 5.091 17 C -0.136 4.136 18 C -0.639 4.639 19 S 2.594 3.406 20 O -0.926 6.926 21 O -0.910 6.910 22 C -0.631 4.631 23 C -0.201 4.201 24 C -0.196 4.196 25 C -0.202 4.202 26 N -0.180 5.180 27 C -0.074 4.074 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.049 0.951 35 H 0.180 0.820 36 H 0.162 0.838 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.102 0.898 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.062 0.159 27.452 27.453 hybrid contribution 0.397 -0.094 0.794 0.893 sum 0.459 0.065 28.246 28.250 Atomic orbital electron populations 1.22100 0.96567 1.00633 1.00957 1.19876 0.93599 0.92747 0.84854 0.95703 1.20790 1.44497 0.95847 0.93953 0.89816 1.24917 0.93925 0.98257 0.95216 1.69872 1.44982 1.36028 1.01685 0.87027 0.79856 0.86359 0.77710 1.20029 1.21064 1.18066 1.59198 1.11531 1.47537 0.98734 1.22476 0.84122 1.00961 1.04162 1.23447 0.97250 0.90707 0.84257 1.74837 1.20759 1.10633 1.10293 1.73987 1.17518 1.20877 0.96768 1.22606 1.04061 0.94220 0.92683 1.28716 1.22910 1.16940 0.95341 1.08865 0.77045 0.76769 0.77921 1.93562 1.40737 1.76936 1.81320 1.93616 1.85603 1.31883 1.79942 1.29800 1.05047 1.04500 1.23748 1.21853 1.03652 0.90117 1.04474 1.21722 0.95791 0.99781 1.02286 1.21859 0.91532 1.02310 1.04492 1.45957 1.41387 1.24746 1.05913 1.22242 0.95836 0.87323 1.02037 0.92415 0.93100 0.93606 0.92277 0.92625 0.87170 0.95056 0.82020 0.83795 0.90251 0.89924 0.91232 0.90691 0.89809 0.90771 0.91027 0.89977 0.90054 0.89276 0.89789 0.88070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.03 37.16 0.34 -3.07 16 2 C 0.19 4.74 1.39 -68.87 -0.10 4.65 16 3 H 0.03 0.66 5.27 -51.93 -0.27 0.38 16 4 C -0.51 -13.87 7.39 -34.44 -0.25 -14.12 16 5 H 0.08 2.43 8.05 -52.49 -0.42 2.01 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 7 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 8 Si 0.86 21.68 26.98 -169.99 -4.59 17.10 16 9 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.26 -6.44 6.83 56.52 0.39 -6.06 16 12 N -0.45 -9.57 4.69 -176.09 -0.83 -10.39 16 13 C 0.03 0.56 9.10 60.06 0.55 1.11 16 14 C 0.40 8.24 6.72 -318.88 -2.14 6.09 16 15 N -0.32 -7.20 9.03 30.31 0.27 -6.92 16 16 N -0.25 -5.07 12.18 32.99 0.40 -4.67 16 17 C 0.13 2.14 7.33 -154.01 -1.13 1.01 16 18 C -0.51 -5.05 5.27 36.01 0.19 -4.86 16 19 S 2.42 26.97 3.75 -107.50 -0.40 26.56 16 20 O -0.93 -12.44 17.91 -57.83 -1.04 -13.47 16 21 O -0.91 -14.07 17.91 -57.83 -1.04 -15.11 16 22 C -0.54 -3.38 0.87 -90.62 -0.08 -3.46 16 23 C -0.14 -0.58 8.22 37.16 0.31 -0.27 16 24 C -0.14 -0.83 8.48 37.16 0.32 -0.52 16 25 C -0.14 -0.70 8.23 37.16 0.31 -0.39 16 26 N -0.48 -7.97 3.21 -121.46 -0.39 -8.36 16 27 C 0.07 0.78 9.33 59.85 0.56 1.34 16 28 H 0.06 1.34 5.35 -51.92 -0.28 1.06 16 29 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.06 0.83 5.41 -51.93 -0.28 0.55 16 33 H 0.11 2.22 6.82 -51.93 -0.35 1.86 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.16 1.16 6.87 -51.93 -0.36 0.80 16 36 H 0.14 0.79 6.00 -51.93 -0.31 0.48 16 37 H 0.08 0.34 8.06 -51.93 -0.42 -0.08 16 38 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.07 0.15 6.56 -51.93 -0.34 -0.19 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.23 6.55 -51.93 -0.34 -0.11 16 44 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.08 0.46 8.05 -51.93 -0.42 0.04 16 46 H 0.09 0.96 7.85 -51.93 -0.41 0.55 16 47 H 0.08 0.63 7.25 -51.93 -0.38 0.25 16 48 H 0.10 1.10 7.57 -51.93 -0.39 0.71 16 LS Contribution 386.59 15.07 5.83 5.83 Total: -1.00 -37.89 386.59 -9.75 -47.64 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -7.50 Total: -2.48 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -1.24 Total: -10.33 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.23 Total: -55.74 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -2.07 Total: -28.58 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.59 Total: 17.10 kcal Atomic # 16 Polarization: 26.97 SS G_CDS: -0.40 Total: 26.56 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.89 -9.75 -47.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646697689.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.605 kcal (2) G-P(sol) polarization free energy of solvation -37.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds