Wall clock time and date at job start Wed Apr 1 2020 03:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47170 * 2 1 4 4 C 1.50701 * 109.46709 * 240.00089 * 2 1 3 5 5 H 1.07996 * 119.99914 * 275.03267 * 4 2 1 6 6 C 1.37872 * 119.99817 * 95.04050 * 4 2 1 7 7 N 1.31516 * 119.99973 * 184.82587 * 6 4 2 8 8 Si 1.86801 * 120.00419 * 4.82268 * 6 4 2 9 9 H 1.48499 * 109.46815 * 84.66238 * 8 6 4 10 10 H 1.48497 * 109.47235 * 204.66506 * 8 6 4 11 11 H 1.48497 * 109.46849 * 324.66971 * 8 6 4 12 12 N 1.46898 * 109.46903 * 120.00161 * 2 1 3 13 13 C 1.46899 * 110.99837 * 176.04157 * 12 2 1 14 14 C 1.38568 * 111.00271 * 299.99603 * 12 2 1 15 15 N 1.31222 * 126.47527 * 359.69198 * 14 12 2 16 16 N 1.28523 * 109.86299 * 179.81665 * 15 14 12 17 17 C 1.30298 * 110.05519 * 0.45843 * 16 15 14 18 18 C 1.50703 * 126.34837 * 179.76343 * 17 16 15 19 19 S 1.81399 * 109.46613 * 269.95128 * 18 17 16 20 20 O 1.42097 * 108.58027 * 294.48330 * 19 18 17 21 21 O 1.42103 * 108.57917 * 65.51335 * 19 18 17 22 22 C 1.81404 * 101.91779 * 179.97438 * 19 18 17 23 23 C 1.53006 * 109.46982 * 60.00302 * 22 19 18 24 24 C 1.52999 * 109.47154 * 179.97438 * 22 19 18 25 25 C 1.53000 * 109.47309 * 300.00039 * 22 19 18 26 26 N 1.36457 * 126.47626 * 179.97438 * 14 12 2 27 27 C 1.46503 * 127.13473 * 359.97438 * 26 14 12 28 28 H 1.09008 * 109.47122 * 295.63015 * 1 2 3 29 29 H 1.09003 * 109.46877 * 55.62082 * 1 2 3 30 30 H 1.08999 * 109.47616 * 175.62875 * 1 2 3 31 31 H 0.97008 * 120.00454 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47127 * 183.95556 * 13 12 2 33 33 H 1.08998 * 109.47623 * 303.95547 * 13 12 2 34 34 H 1.09002 * 109.46925 * 63.95697 * 13 12 2 35 35 H 1.08996 * 109.46754 * 29.94843 * 18 17 16 36 36 H 1.08991 * 109.46640 * 149.95072 * 18 17 16 37 37 H 1.08996 * 109.47441 * 59.99329 * 23 22 19 38 38 H 1.08994 * 109.47086 * 180.02562 * 23 22 19 39 39 H 1.09006 * 109.46708 * 299.99713 * 23 22 19 40 40 H 1.09006 * 109.46646 * 60.00119 * 24 22 19 41 41 H 1.09001 * 109.47516 * 180.02562 * 24 22 19 42 42 H 1.09001 * 109.47788 * 300.00709 * 24 22 19 43 43 H 1.09000 * 109.46851 * 59.99797 * 25 22 19 44 44 H 1.08998 * 109.46793 * 179.97438 * 25 22 19 45 45 H 1.08995 * 109.46686 * 299.99967 * 25 22 19 46 46 H 1.08998 * 109.46641 * 90.02082 * 27 26 14 47 47 H 1.08997 * 109.47060 * 210.02208 * 27 26 14 48 48 H 1.09003 * 109.47057 * 330.02177 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.1348 -1.7855 -1.2293 6 6 2.3609 0.0122 -2.3578 7 7 2.7082 -0.6129 -3.4615 8 14 2.3128 1.8791 -2.3175 9 1 3.5958 2.3957 -1.7771 10 1 2.1102 2.3989 -3.6937 11 1 1.1941 2.3268 -1.4496 12 7 2.0196 -0.6925 1.1994 13 6 3.4850 -0.7947 1.1870 14 6 1.5754 -0.0642 2.3518 15 7 0.8234 1.0093 2.4146 16 7 0.6002 1.3149 3.6429 17 6 1.1996 0.4672 4.4302 18 6 1.1863 0.4846 5.9371 19 16 2.5779 1.4784 6.5425 20 8 3.7890 0.8267 6.1852 21 8 2.3745 2.8288 6.1496 22 6 2.3670 1.3622 8.3405 23 6 2.4452 -0.1044 8.7694 24 6 3.4744 2.1562 9.0362 25 6 1.0039 1.9362 8.7323 26 7 1.8417 -0.4418 3.6358 27 6 2.6481 -1.5843 4.0725 28 1 -0.3634 0.4446 0.9266 29 1 -0.3633 0.5803 -0.8482 30 1 -0.3634 -1.0246 -0.0783 31 1 2.9391 -0.1046 -4.2548 32 1 3.8163 -1.3723 2.0499 33 1 3.8069 -1.2916 0.2718 34 1 3.9192 0.2042 1.2300 35 1 0.2500 0.9191 6.2871 36 1 1.2769 -0.5345 6.3129 37 1 3.4162 -0.5134 8.4902 38 1 2.3180 -0.1743 9.8496 39 1 1.6565 -0.6704 8.2737 40 1 3.4191 3.2011 8.7306 41 1 3.3480 2.0861 10.1166 42 1 4.4453 1.7470 8.7571 43 1 0.2153 1.3702 8.2366 44 1 0.8771 1.8659 9.8126 45 1 0.9483 2.9810 8.4267 46 1 3.6875 -1.2749 4.1812 47 1 2.2749 -1.9475 5.0300 48 1 2.5816 -2.3805 3.3310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646697689.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:13 Heat of formation + Delta-G solvation = 3.013301 kcal Electronic energy + Delta-G solvation = -29936.927247 eV Core-core repulsion = 25962.852131 eV Total energy + Delta-G solvation = -3974.075116 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.19048 -39.12390 -38.21727 -37.57477 -37.16842 -36.29366 -34.87931 -33.34496 -31.91333 -29.77313 -28.69452 -28.29522 -28.04530 -27.16641 -26.09347 -23.65931 -22.93498 -22.00337 -21.24887 -19.64081 -19.30707 -18.20518 -18.16710 -17.46114 -17.38438 -17.08020 -16.76794 -16.46249 -15.81693 -15.70520 -15.26365 -15.10046 -14.83640 -14.61468 -14.52616 -14.38082 -14.22946 -14.05454 -13.78848 -13.32315 -13.27850 -13.26058 -13.21994 -13.09221 -13.05472 -12.80757 -12.65018 -12.63737 -12.45893 -12.30378 -12.27468 -12.15642 -12.14447 -11.92978 -11.70191 -11.33297 -11.17855 -11.08841 -10.84239 -10.59040 -9.21034 -8.38273 -6.41829 -1.29092 0.63304 1.10964 1.25606 1.30697 1.42746 1.56053 1.67437 2.25736 2.39742 2.74220 2.83636 2.98190 3.06550 3.40329 3.44158 3.62235 3.72420 3.90073 3.94332 4.08852 4.24934 4.31646 4.34083 4.48409 4.51639 4.58487 4.59468 4.63728 4.70051 4.72235 4.77146 4.82342 4.83591 4.83892 4.93380 5.02471 5.09038 5.10417 5.24041 5.30986 5.33744 5.48863 5.58123 5.73393 6.09565 6.43051 6.64580 7.23642 7.60000 8.76655 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.023349 B = 0.003008 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.897957 B = 9306.586125 C = 9476.319845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.200 3.800 3 H 0.006 0.994 4 C -0.503 4.503 5 H 0.057 0.943 6 C 0.039 3.961 7 N -0.927 5.927 8 Si 0.913 3.087 9 H -0.272 1.272 10 H -0.275 1.275 11 H -0.261 1.261 12 N -0.448 5.448 13 C 0.031 3.969 14 C 0.374 3.626 15 N -0.360 5.360 16 N -0.299 5.299 17 C 0.156 3.844 18 C -0.515 4.515 19 S 2.387 3.613 20 O -0.963 6.963 21 O -0.975 6.975 22 C -0.495 4.495 23 C -0.154 4.154 24 C -0.151 4.151 25 C -0.156 4.156 26 N -0.475 5.475 27 C 0.049 3.951 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.271 0.729 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.017 0.983 35 H 0.192 0.808 36 H 0.198 0.802 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.062 0.938 41 H 0.115 0.885 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.066 0.934 46 H 0.096 0.904 47 H 0.133 0.867 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.202 -2.236 33.314 33.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.095 3.905 3 H 0.024 0.976 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.161 4.161 7 N -0.566 5.566 8 Si 0.738 3.262 9 H -0.197 1.197 10 H -0.201 1.201 11 H -0.185 1.185 12 N -0.171 5.171 13 C -0.115 4.115 14 C 0.017 3.983 15 N -0.206 5.206 16 N -0.140 5.140 17 C -0.113 4.113 18 C -0.643 4.643 19 S 2.573 3.427 20 O -0.960 6.960 21 O -0.972 6.972 22 C -0.591 4.591 23 C -0.211 4.211 24 C -0.210 4.210 25 C -0.214 4.214 26 N -0.171 5.171 27 C -0.091 4.091 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.036 0.964 35 H 0.210 0.790 36 H 0.215 0.785 37 H 0.096 0.904 38 H 0.126 0.874 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.134 0.866 42 H 0.089 0.911 43 H 0.112 0.888 44 H 0.128 0.872 45 H 0.085 0.915 46 H 0.114 0.886 47 H 0.152 0.848 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.460 -1.112 32.093 32.116 hybrid contribution 0.596 0.241 -0.326 0.721 sum 0.136 -0.871 31.768 31.780 Atomic orbital electron populations 1.21994 0.96015 1.00523 1.00902 1.19598 0.93961 0.91557 0.85408 0.97591 1.20828 1.43598 0.94669 0.95061 0.92449 1.25471 0.94054 1.01594 0.95010 1.69956 1.46812 1.37445 1.02396 0.86247 0.79684 0.82374 0.77880 1.19701 1.20070 1.18492 1.59010 1.12510 1.47350 0.98279 1.22530 0.83099 1.00665 1.05255 1.23223 0.98402 0.91290 0.85386 1.74654 1.21900 1.11944 1.12130 1.73887 1.20536 1.22982 0.96564 1.23658 1.00675 0.91915 0.95062 1.29046 1.23987 1.20375 0.90883 1.09383 0.76829 0.75601 0.80917 1.93514 1.42277 1.76844 1.83348 1.93550 1.86203 1.34887 1.82525 1.29451 1.06183 1.06976 1.16498 1.22097 1.04791 0.87841 1.06419 1.21927 0.95719 0.99163 1.04141 1.22083 0.90901 1.01855 1.06561 1.46204 1.41041 1.25589 1.04304 1.22767 0.95922 0.85804 1.04631 0.91905 0.93841 0.93506 0.92000 0.88414 0.88852 0.96384 0.79024 0.78474 0.90402 0.87389 0.88530 0.91871 0.86628 0.91089 0.88771 0.87163 0.91502 0.88582 0.84833 0.87563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.57 9.03 71.98 0.65 -5.92 16 2 C 0.20 10.10 1.39 44.17 0.06 10.16 16 3 H 0.01 0.34 5.27 -2.39 -0.01 0.33 16 4 C -0.50 -28.11 7.39 25.60 0.19 -27.92 16 5 H 0.06 3.46 8.05 -2.91 -0.02 3.44 16 6 C 0.04 2.25 5.47 84.65 0.46 2.71 16 7 N -0.93 -55.99 13.96 21.45 0.30 -55.69 16 8 Si 0.91 45.88 26.98 68.60 1.85 47.73 16 9 H -0.27 -13.39 7.11 99.48 0.71 -12.68 16 10 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.26 -13.17 6.83 99.48 0.68 -12.49 16 12 N -0.45 -19.45 4.69 -711.01 -3.33 -22.78 16 13 C 0.03 1.19 9.10 127.69 1.16 2.35 16 14 C 0.37 15.47 6.72 260.11 1.75 17.22 16 15 N -0.36 -16.59 9.03 -58.01 -0.52 -17.11 16 16 N -0.30 -12.19 12.18 -49.53 -0.60 -12.79 16 17 C 0.16 4.78 7.33 137.64 1.01 5.78 16 18 C -0.51 -8.19 5.27 71.24 0.38 -7.81 16 19 S 2.39 48.84 3.75 -56.49 -0.21 48.62 16 20 O -0.96 -24.48 17.91 -127.37 -2.28 -26.76 16 21 O -0.97 -30.56 17.91 -127.37 -2.28 -32.85 16 22 C -0.50 -4.23 0.87 -10.79 -0.01 -4.24 16 23 C -0.15 -0.33 8.22 71.98 0.59 0.26 16 24 C -0.15 -1.40 8.48 71.98 0.61 -0.79 16 25 C -0.16 -0.81 8.23 71.98 0.59 -0.22 16 26 N -0.48 -14.82 3.21 -538.18 -1.73 -16.54 16 27 C 0.05 0.95 9.33 127.77 1.19 2.14 16 28 H 0.06 2.99 5.35 -2.38 -0.01 2.98 16 29 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 32 H 0.10 2.83 5.41 -2.39 -0.01 2.82 16 33 H 0.09 3.87 6.82 -2.39 -0.02 3.86 16 34 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.19 1.91 6.87 -2.39 -0.02 1.89 16 36 H 0.20 0.87 6.00 -2.39 -0.01 0.86 16 37 H 0.08 0.27 8.06 -2.39 -0.02 0.25 16 38 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.10 -0.29 6.56 -2.38 -0.02 -0.30 16 40 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.09 0.08 6.55 -2.39 -0.02 0.06 16 44 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 45 H 0.07 0.59 8.05 -2.39 -0.02 0.57 16 46 H 0.10 1.78 7.85 -2.39 -0.02 1.76 16 47 H 0.13 1.22 7.25 -2.39 -0.02 1.20 16 48 H 0.11 1.99 7.57 -2.39 -0.02 1.97 16 Total: -1.00 -90.10 386.59 0.76 -89.33 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: 0.93 Total: 5.10 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 8.64 Total: -6.27 kcal Atomic # 7 Polarization: -119.03 SS G_CDS: -5.89 Total: -124.91 kcal Atomic # 8 Polarization: -55.04 SS G_CDS: -4.56 Total: -59.60 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.85 Total: 47.73 kcal Atomic # 16 Polarization: 48.84 SS G_CDS: -0.21 Total: 48.62 kcal Total: -90.10 0.76 -89.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646697689.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.347 kcal (2) G-P(sol) polarization free energy of solvation -90.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds