Wall clock time and date at job start Wed Apr 1 2020 03:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46860 * 2 1 4 4 C 1.53004 * 109.46990 * 119.99582 * 2 1 3 5 5 N 1.46500 * 109.46883 * 62.93287 * 4 2 1 6 6 C 1.36735 * 127.13486 * 70.00954 * 5 4 2 7 7 C 1.50704 * 126.34875 * 0.21834 * 6 5 4 8 8 S 1.81394 * 109.47182 * 88.21370 * 7 6 5 9 9 C 1.81398 * 101.92174 * 184.74192 * 8 7 6 10 10 O 1.42100 * 108.57837 * 299.23156 * 8 7 6 11 11 O 1.42101 * 108.58076 * 70.25567 * 8 7 6 12 12 N 1.30294 * 107.30419 * 180.25794 * 6 5 4 13 13 N 1.28526 * 110.05696 * 359.97438 * 12 6 5 14 14 C 1.31217 * 109.85692 * 0.02562 * 13 12 6 15 15 N 1.38578 * 126.47532 * 179.97438 * 14 13 12 16 16 C 1.46905 * 111.00066 * 239.75382 * 15 14 13 17 17 C 1.46905 * 111.00078 * 3.70599 * 15 14 13 18 18 H 1.08998 * 109.46736 * 54.99681 * 17 15 14 19 19 C 1.53001 * 109.46748 * 295.00752 * 17 15 14 20 20 C 1.50694 * 109.47381 * 175.00104 * 17 15 14 21 21 H 1.08002 * 119.99994 * 0.02562 * 20 17 15 22 22 C 1.37875 * 119.99833 * 179.97438 * 20 17 15 23 23 N 1.31513 * 120.00376 * 0.02562 * 22 20 17 24 24 Si 1.86804 * 119.99919 * 180.02562 * 22 20 17 25 25 H 1.48501 * 109.47083 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47259 * 120.00097 * 24 22 20 27 27 H 1.48506 * 109.47107 * 240.00099 * 24 22 20 28 28 H 1.09004 * 109.47230 * 189.49829 * 1 2 3 29 29 H 1.09002 * 109.47431 * 309.49846 * 1 2 3 30 30 H 1.09003 * 109.47004 * 69.49819 * 1 2 3 31 31 H 1.08994 * 109.47629 * 239.99826 * 2 1 3 32 32 H 1.09004 * 109.47328 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46968 * 299.99530 * 3 2 1 34 34 H 1.08999 * 109.47435 * 60.00211 * 3 2 1 35 35 H 1.08997 * 109.46973 * 302.93423 * 4 2 1 36 36 H 1.09002 * 109.46733 * 182.93246 * 4 2 1 37 37 H 1.09005 * 109.46764 * 208.21219 * 7 6 5 38 38 H 1.09004 * 109.47208 * 328.21030 * 7 6 5 39 39 H 1.08998 * 109.47211 * 60.00205 * 9 8 7 40 40 H 1.08999 * 109.47002 * 179.97438 * 9 8 7 41 41 H 1.09001 * 109.47167 * 299.99656 * 9 8 7 42 42 H 1.08998 * 109.46919 * 49.43530 * 16 15 14 43 43 H 1.09006 * 109.46856 * 169.42869 * 16 15 14 44 44 H 1.08994 * 109.47095 * 289.43608 * 16 15 14 45 45 H 1.08993 * 109.47417 * 59.99612 * 19 17 15 46 46 H 1.09002 * 109.46828 * 180.02562 * 19 17 15 47 47 H 1.09004 * 109.46902 * 299.99308 * 19 17 15 48 48 H 0.96996 * 120.00522 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6102 -2.1213 1.2146 6 6 2.0576 -3.1015 0.3727 7 6 3.1007 -2.9467 -0.7039 8 16 4.7458 -3.2413 0.0012 9 6 5.8289 -2.8652 -1.4045 10 8 4.9793 -2.2811 1.0223 11 8 4.8660 -4.6236 0.3081 12 7 1.4144 -4.1939 0.6734 13 7 0.5976 -3.9725 1.6408 14 6 0.6763 -2.7164 2.0119 15 7 -0.0517 -2.1088 3.0224 16 6 -0.8543 -0.9961 2.4972 17 6 -0.8985 -3.0849 3.7212 18 1 -0.2817 -3.9072 4.0838 19 6 -1.9548 -3.6268 2.7561 20 6 -1.5794 -2.4156 4.8871 21 1 -1.4013 -1.3696 5.0886 22 6 -2.4306 -3.1383 5.6959 23 7 -2.6479 -4.4119 5.4502 24 14 -3.2752 -2.3085 7.1407 25 1 -2.8659 -0.8822 7.2008 26 1 -4.7478 -2.3946 6.9694 27 1 -2.8828 -2.9890 8.4010 28 1 -0.3634 -1.0136 0.1696 29 1 -0.3634 0.6537 0.7930 30 1 -0.3633 0.3599 -0.9626 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6343 -0.2385 2.1385 36 1 3.1287 -0.6758 1.2760 37 1 2.9118 -3.6678 -1.4992 38 1 3.0555 -1.9366 -1.1111 39 1 5.6755 -1.8317 -1.7150 40 1 6.8688 -3.0050 -1.1095 41 1 5.5932 -3.5325 -2.2335 42 1 -1.4099 -1.3308 1.6212 43 1 -1.5526 -0.6586 3.2632 44 1 -0.1961 -0.1736 2.2176 45 1 -1.4623 -4.1109 1.9129 46 1 -2.5834 -4.3507 3.2747 47 1 -2.5716 -2.8045 2.3934 48 1 -3.2470 -4.9202 6.0190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646855442.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:52 Heat of formation + Delta-G solvation = 38.317744 kcal Electronic energy + Delta-G solvation = -30490.431876 eV Core-core repulsion = 26517.887675 eV Total energy + Delta-G solvation = -3972.544201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.73483 -37.64421 -37.23333 -36.98949 -36.19194 -33.31426 -33.03596 -31.88245 -29.99494 -28.97544 -28.11278 -27.30833 -26.71059 -25.15119 -24.99425 -21.93222 -21.29332 -20.25901 -19.59877 -19.08278 -17.25495 -16.82732 -16.42128 -16.30800 -16.05437 -15.85266 -15.54276 -15.36922 -14.75371 -14.21575 -14.01760 -13.80430 -13.63873 -13.58083 -13.45467 -13.24154 -13.08497 -12.66400 -12.48694 -12.30435 -12.21173 -12.10806 -11.82314 -11.66633 -11.49871 -11.41431 -11.21762 -11.18894 -11.13915 -10.97741 -10.78356 -10.58896 -10.45148 -10.20735 -10.07480 -9.79281 -9.73892 -9.03945 -8.88511 -8.41479 -7.44278 -6.03988 -4.11458 -0.42072 2.08277 2.42939 2.50200 3.25946 3.28386 3.36210 3.38730 3.40498 3.65306 4.03736 4.24849 4.27927 4.36521 4.40319 4.50741 4.54220 4.66911 4.80929 5.02271 5.08337 5.20696 5.23251 5.27499 5.38174 5.45401 5.50311 5.57167 5.62010 5.73175 5.78756 5.91080 5.96861 6.07052 6.15913 6.26204 6.47245 6.74880 6.88386 7.08302 7.21077 7.41556 7.61460 7.72654 7.95564 8.26997 8.41499 8.89634 9.21679 9.53056 11.02366 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.003571 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.972537 B = 7839.921862 C = 8794.828270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.114 4.114 3 C -0.146 4.146 4 C 0.096 3.904 5 N -0.474 5.474 6 C 0.131 3.869 7 C -0.510 4.510 8 S 2.415 3.585 9 C -0.659 4.659 10 O -0.930 6.930 11 O -0.918 6.918 12 N -0.252 5.252 13 N -0.310 5.310 14 C 0.402 3.598 15 N -0.450 5.450 16 C 0.020 3.980 17 C 0.226 3.774 18 H 0.055 0.945 19 C -0.173 4.173 20 C -0.515 4.515 21 H 0.065 0.935 22 C 0.064 3.936 23 N -0.882 5.882 24 Si 0.900 3.100 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.283 1.283 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.162 0.838 38 H 0.141 0.859 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.035 0.965 43 H 0.098 0.902 44 H 0.062 0.938 45 H 0.041 0.959 46 H 0.091 0.909 47 H 0.020 0.980 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.414 11.425 -17.775 25.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.133 4.133 3 C -0.204 4.204 4 C -0.027 4.027 5 N -0.171 5.171 6 C -0.135 4.135 7 C -0.639 4.639 8 S 2.594 3.406 9 C -0.808 4.808 10 O -0.927 6.927 11 O -0.914 6.914 12 N -0.094 5.094 13 N -0.156 5.156 14 C 0.047 3.953 15 N -0.174 5.174 16 C -0.127 4.127 17 C 0.122 3.878 18 H 0.073 0.927 19 C -0.232 4.232 20 C -0.554 4.554 21 H 0.083 0.917 22 C -0.139 4.139 23 N -0.520 5.520 24 Si 0.728 3.272 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.209 1.209 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.179 0.821 38 H 0.159 0.841 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.054 0.946 43 H 0.116 0.884 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.110 0.890 47 H 0.039 0.961 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.405 9.783 -16.511 23.410 hybrid contribution -0.755 1.728 -0.508 1.953 sum 12.650 11.511 -17.019 24.128 Atomic orbital electron populations 1.22320 0.94271 1.02929 1.02308 1.21563 0.97437 0.96881 0.97433 1.21798 1.01246 0.94567 1.02755 1.22277 1.02003 0.77659 1.00750 1.46051 1.31841 1.10521 1.28643 1.22535 1.05223 0.87130 0.98659 1.28723 1.16568 1.12733 1.05848 1.08437 0.78007 0.76228 0.77978 1.30329 1.17091 1.12162 1.21191 1.93592 1.83709 1.63325 1.52103 1.93647 1.84559 1.31387 1.81841 1.74016 1.04941 1.21002 1.09487 1.74963 1.18352 1.12108 1.10176 1.23342 0.92021 0.89594 0.90345 1.59293 1.28066 1.12893 1.17099 1.23013 0.97186 0.92044 1.00451 1.19444 0.88896 0.88876 0.90583 0.92695 1.22441 1.00638 1.01059 0.99059 1.21042 1.26313 0.96987 1.11027 0.91697 1.24893 0.96466 0.94846 0.97657 1.69927 1.36536 1.07118 1.38440 0.86422 0.79037 0.79516 0.82270 1.19750 1.21069 1.20929 0.91961 0.91127 0.92492 0.90846 0.92121 0.91904 0.91811 0.87207 0.87858 0.82053 0.84053 0.85306 0.85004 0.85052 0.94612 0.88384 0.92011 0.94022 0.89037 0.96086 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 7.39 37.16 0.27 -1.44 16 2 C -0.11 -1.04 2.99 -90.62 -0.27 -1.32 16 3 C -0.15 -0.98 9.18 37.16 0.34 -0.64 16 4 C 0.10 1.19 4.91 -4.04 -0.02 1.17 16 5 N -0.47 -7.85 2.22 -114.08 -0.25 -8.11 16 6 C 0.13 2.13 7.16 -154.02 -1.10 1.02 16 7 C -0.51 -4.72 6.15 36.01 0.22 -4.50 16 8 S 2.41 23.91 5.35 -107.50 -0.57 23.33 16 9 C -0.66 -2.66 10.62 101.05 1.07 -1.59 16 10 O -0.93 -12.12 17.01 -57.83 -0.98 -13.10 16 11 O -0.92 -13.60 18.10 -57.83 -1.05 -14.65 16 12 N -0.25 -5.22 12.18 32.99 0.40 -4.82 16 13 N -0.31 -7.22 9.20 30.31 0.28 -6.94 16 14 C 0.40 8.44 6.21 -318.88 -1.98 6.46 16 15 N -0.45 -9.78 4.68 -176.08 -0.82 -10.60 16 16 C 0.02 0.35 6.46 60.07 0.39 0.74 16 17 C 0.23 5.81 2.04 -68.86 -0.14 5.67 16 18 H 0.06 1.63 8.00 -51.93 -0.42 1.21 16 19 C -0.17 -4.36 8.29 37.16 0.31 -4.06 16 20 C -0.52 -13.75 7.73 -34.44 -0.27 -14.02 16 21 H 0.06 1.68 6.88 -52.49 -0.36 1.32 16 22 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 23 N -0.88 -25.22 11.32 55.43 0.63 -24.60 16 24 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H 0.06 0.86 4.97 -51.93 -0.26 0.60 16 29 H 0.07 0.72 6.16 -51.93 -0.32 0.40 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.58 6.06 -51.93 -0.31 0.26 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.11 1.41 6.23 -51.93 -0.32 1.09 16 36 H 0.10 1.16 7.05 -51.93 -0.37 0.80 16 37 H 0.16 1.05 8.14 -51.92 -0.42 0.63 16 38 H 0.14 0.73 5.96 -51.92 -0.31 0.42 16 39 H 0.13 0.20 8.14 -51.92 -0.42 -0.22 16 40 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 42 H 0.04 0.64 5.51 -51.93 -0.29 0.35 16 43 H 0.10 1.86 6.21 -51.93 -0.32 1.54 16 44 H 0.06 0.89 3.32 -51.93 -0.17 0.72 16 45 H 0.04 1.04 5.74 -51.93 -0.30 0.74 16 46 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 47 H 0.02 0.49 6.73 -51.93 -0.35 0.14 16 48 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 373.67 15.07 5.63 5.63 Total: -1.00 -38.12 373.67 -9.96 -48.08 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.93 Total: 0.70 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -1.27 Total: -10.85 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.23 Total: -55.05 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -2.03 Total: -27.75 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 23.91 SS G_CDS: -0.57 Total: 23.33 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.12 -9.96 -48.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646855442.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.398 kcal (2) G-P(sol) polarization free energy of solvation -38.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds