Wall clock time and date at job start Wed Apr 1 2020 03:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46860 * 2 1 4 4 C 1.53004 * 109.46990 * 119.99582 * 2 1 3 5 5 N 1.46500 * 109.46883 * 62.93287 * 4 2 1 6 6 C 1.36735 * 127.13486 * 70.00954 * 5 4 2 7 7 C 1.50704 * 126.34875 * 0.21834 * 6 5 4 8 8 S 1.81394 * 109.47182 * 88.21370 * 7 6 5 9 9 C 1.81398 * 101.92174 * 184.74192 * 8 7 6 10 10 O 1.42100 * 108.57837 * 299.23156 * 8 7 6 11 11 O 1.42101 * 108.58076 * 70.25567 * 8 7 6 12 12 N 1.30294 * 107.30419 * 180.25794 * 6 5 4 13 13 N 1.28526 * 110.05696 * 359.97438 * 12 6 5 14 14 C 1.31217 * 109.85692 * 0.02562 * 13 12 6 15 15 N 1.38578 * 126.47532 * 179.97438 * 14 13 12 16 16 C 1.46905 * 111.00066 * 239.75382 * 15 14 13 17 17 C 1.46905 * 111.00078 * 3.70599 * 15 14 13 18 18 H 1.08998 * 109.46736 * 54.99681 * 17 15 14 19 19 C 1.53001 * 109.46748 * 295.00752 * 17 15 14 20 20 C 1.50694 * 109.47381 * 175.00104 * 17 15 14 21 21 H 1.08002 * 119.99994 * 0.02562 * 20 17 15 22 22 C 1.37875 * 119.99833 * 179.97438 * 20 17 15 23 23 N 1.31513 * 120.00376 * 0.02562 * 22 20 17 24 24 Si 1.86804 * 119.99919 * 180.02562 * 22 20 17 25 25 H 1.48501 * 109.47083 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47259 * 120.00097 * 24 22 20 27 27 H 1.48506 * 109.47107 * 240.00099 * 24 22 20 28 28 H 1.09004 * 109.47230 * 189.49829 * 1 2 3 29 29 H 1.09002 * 109.47431 * 309.49846 * 1 2 3 30 30 H 1.09003 * 109.47004 * 69.49819 * 1 2 3 31 31 H 1.08994 * 109.47629 * 239.99826 * 2 1 3 32 32 H 1.09004 * 109.47328 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46968 * 299.99530 * 3 2 1 34 34 H 1.08999 * 109.47435 * 60.00211 * 3 2 1 35 35 H 1.08997 * 109.46973 * 302.93423 * 4 2 1 36 36 H 1.09002 * 109.46733 * 182.93246 * 4 2 1 37 37 H 1.09005 * 109.46764 * 208.21219 * 7 6 5 38 38 H 1.09004 * 109.47208 * 328.21030 * 7 6 5 39 39 H 1.08998 * 109.47211 * 60.00205 * 9 8 7 40 40 H 1.08999 * 109.47002 * 179.97438 * 9 8 7 41 41 H 1.09001 * 109.47167 * 299.99656 * 9 8 7 42 42 H 1.08998 * 109.46919 * 49.43530 * 16 15 14 43 43 H 1.09006 * 109.46856 * 169.42869 * 16 15 14 44 44 H 1.08994 * 109.47095 * 289.43608 * 16 15 14 45 45 H 1.08993 * 109.47417 * 59.99612 * 19 17 15 46 46 H 1.09002 * 109.46828 * 180.02562 * 19 17 15 47 47 H 1.09004 * 109.46902 * 299.99308 * 19 17 15 48 48 H 0.96996 * 120.00522 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6102 -2.1213 1.2146 6 6 2.0576 -3.1015 0.3727 7 6 3.1007 -2.9467 -0.7039 8 16 4.7458 -3.2413 0.0012 9 6 5.8289 -2.8652 -1.4045 10 8 4.9793 -2.2811 1.0223 11 8 4.8660 -4.6236 0.3081 12 7 1.4144 -4.1939 0.6734 13 7 0.5976 -3.9725 1.6408 14 6 0.6763 -2.7164 2.0119 15 7 -0.0517 -2.1088 3.0224 16 6 -0.8543 -0.9961 2.4972 17 6 -0.8985 -3.0849 3.7212 18 1 -0.2817 -3.9072 4.0838 19 6 -1.9548 -3.6268 2.7561 20 6 -1.5794 -2.4156 4.8871 21 1 -1.4013 -1.3696 5.0886 22 6 -2.4306 -3.1383 5.6959 23 7 -2.6479 -4.4119 5.4502 24 14 -3.2752 -2.3085 7.1407 25 1 -2.8659 -0.8822 7.2008 26 1 -4.7478 -2.3946 6.9694 27 1 -2.8828 -2.9890 8.4010 28 1 -0.3634 -1.0136 0.1696 29 1 -0.3634 0.6537 0.7930 30 1 -0.3633 0.3599 -0.9626 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6343 -0.2385 2.1385 36 1 3.1287 -0.6758 1.2760 37 1 2.9118 -3.6678 -1.4992 38 1 3.0555 -1.9366 -1.1111 39 1 5.6755 -1.8317 -1.7150 40 1 6.8688 -3.0050 -1.1095 41 1 5.5932 -3.5325 -2.2335 42 1 -1.4099 -1.3308 1.6212 43 1 -1.5526 -0.6586 3.2632 44 1 -0.1961 -0.1736 2.2176 45 1 -1.4623 -4.1109 1.9129 46 1 -2.5834 -4.3507 3.2747 47 1 -2.5716 -2.8045 2.3934 48 1 -3.2470 -4.9202 6.0190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646855442.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:51 Heat of formation + Delta-G solvation = 9.569289 kcal Electronic energy + Delta-G solvation = -30491.678502 eV Core-core repulsion = 26517.887675 eV Total energy + Delta-G solvation = -3973.790827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.15555 -39.24649 -38.23583 -37.97609 -37.06640 -34.96373 -34.41538 -33.13484 -30.84215 -30.46463 -29.30313 -28.28267 -27.71766 -27.22608 -26.42847 -23.59160 -22.48182 -21.38493 -21.11978 -19.89918 -18.40757 -18.18083 -17.81829 -17.43885 -17.18501 -16.98800 -16.89810 -16.53800 -16.28174 -15.51888 -15.32314 -14.95760 -14.76686 -14.42257 -14.20641 -13.98449 -13.93714 -13.87025 -13.60474 -13.50322 -13.20516 -13.11324 -13.05578 -12.92124 -12.89534 -12.75640 -12.58651 -12.46341 -12.40918 -12.28332 -12.12182 -11.99859 -11.88461 -11.82271 -11.54810 -11.29667 -11.05552 -10.88467 -10.55378 -10.51697 -9.08503 -8.13640 -6.29166 -1.13340 0.75499 1.21100 1.43363 1.44956 1.57088 1.71567 1.83263 2.40212 2.56046 2.94620 2.98138 3.15723 3.17401 3.47357 3.65895 3.72770 3.91927 4.03885 4.14896 4.17791 4.27024 4.29474 4.42174 4.43985 4.45454 4.62914 4.65418 4.70692 4.79664 4.85036 4.92905 4.97520 5.01088 5.05071 5.07633 5.14544 5.16489 5.32900 5.38662 5.44446 5.56955 5.58185 5.81298 6.01056 6.19077 6.52766 6.79985 7.39589 7.73504 8.93389 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.003571 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.972537 B = 7839.921862 C = 8794.828270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.105 4.105 3 C -0.142 4.142 4 C 0.083 3.917 5 N -0.465 5.465 6 C 0.158 3.842 7 C -0.516 4.516 8 S 2.397 3.603 9 C -0.614 4.614 10 O -0.973 6.973 11 O -0.985 6.985 12 N -0.308 5.308 13 N -0.364 5.364 14 C 0.379 3.621 15 N -0.457 5.457 16 C 0.026 3.974 17 C 0.238 3.762 18 H 0.000 1.000 19 C -0.152 4.152 20 C -0.524 4.524 21 H 0.073 0.927 22 C 0.012 3.988 23 N -0.919 5.919 24 Si 0.971 3.029 25 H -0.259 1.259 26 H -0.279 1.279 27 H -0.285 1.285 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.193 0.807 38 H 0.193 0.807 39 H 0.171 0.829 40 H 0.144 0.856 41 H 0.163 0.837 42 H 0.032 0.968 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.037 0.963 46 H 0.062 0.938 47 H 0.030 0.970 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.494 15.242 -20.892 30.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.125 4.125 3 C -0.199 4.199 4 C -0.038 4.038 5 N -0.160 5.160 6 C -0.111 4.111 7 C -0.644 4.644 8 S 2.583 3.417 9 C -0.769 4.769 10 O -0.970 6.970 11 O -0.982 6.982 12 N -0.148 5.148 13 N -0.209 5.209 14 C 0.021 3.979 15 N -0.180 5.180 16 C -0.119 4.119 17 C 0.132 3.868 18 H 0.018 0.982 19 C -0.212 4.212 20 C -0.563 4.563 21 H 0.091 0.909 22 C -0.188 4.188 23 N -0.557 5.557 24 Si 0.796 3.204 25 H -0.182 1.182 26 H -0.205 1.205 27 H -0.211 1.211 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.119 0.881 36 H 0.137 0.863 37 H 0.210 0.790 38 H 0.210 0.790 39 H 0.189 0.811 40 H 0.163 0.837 41 H 0.181 0.819 42 H 0.051 0.949 43 H 0.104 0.896 44 H 0.117 0.883 45 H 0.056 0.944 46 H 0.081 0.919 47 H 0.049 0.951 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.462 13.613 -19.599 28.434 hybrid contribution -1.192 0.585 0.242 1.350 sum 14.270 14.198 -19.356 27.926 Atomic orbital electron populations 1.22302 0.95590 1.00658 1.03424 1.21600 0.96186 0.98441 0.96225 1.21799 1.02330 0.92342 1.03462 1.22735 1.03033 0.75522 1.02496 1.46268 1.30380 1.12088 1.27293 1.23730 1.03801 0.85566 0.98022 1.29126 1.13959 1.16868 1.04473 1.08463 0.78811 0.74416 0.80032 1.29998 1.14473 1.15539 1.16856 1.93538 1.84167 1.63360 1.55965 1.93579 1.85468 1.34773 1.84369 1.73886 1.07007 1.23508 1.10422 1.74763 1.20385 1.13930 1.11806 1.23177 0.93527 0.89691 0.91494 1.59177 1.27971 1.12532 1.18319 1.23090 0.97438 0.91811 0.99609 1.18985 0.88294 0.88392 0.91105 0.98193 1.22188 1.00086 1.00414 0.98494 1.21329 1.26227 0.97323 1.11390 0.90934 1.25811 0.97167 0.95336 1.00459 1.70095 1.37269 1.08743 1.39640 0.85309 0.77865 0.78977 0.78249 1.18234 1.20467 1.21090 0.95607 0.91120 0.90529 0.88633 0.90422 0.90170 0.92214 0.88130 0.86263 0.78985 0.79011 0.81073 0.83730 0.81881 0.94933 0.89603 0.88276 0.94440 0.91931 0.95106 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 7.39 71.98 0.53 -2.55 16 2 C -0.11 -1.54 2.99 -10.79 -0.03 -1.57 16 3 C -0.14 -1.25 9.18 71.98 0.66 -0.58 16 4 C 0.08 1.90 4.91 86.38 0.42 2.33 16 5 N -0.46 -15.42 2.22 -514.85 -1.14 -16.56 16 6 C 0.16 5.07 7.16 137.64 0.99 6.05 16 7 C -0.52 -7.91 6.15 71.24 0.44 -7.47 16 8 S 2.40 42.28 5.35 -56.49 -0.30 41.97 16 9 C -0.61 -1.11 10.62 113.37 1.20 0.10 16 10 O -0.97 -24.04 17.01 -127.37 -2.17 -26.21 16 11 O -0.98 -29.64 18.10 -127.37 -2.31 -31.95 16 12 N -0.31 -13.41 12.18 -49.54 -0.60 -14.01 16 13 N -0.36 -18.23 9.20 -58.01 -0.53 -18.76 16 14 C 0.38 16.74 6.21 260.11 1.62 18.36 16 15 N -0.46 -20.88 4.68 -710.99 -3.32 -24.21 16 16 C 0.03 0.96 6.46 127.69 0.83 1.79 16 17 C 0.24 13.11 2.04 44.17 0.09 13.20 16 18 H 0.00 0.01 8.00 -2.39 -0.02 -0.01 16 19 C -0.15 -8.26 8.29 71.98 0.60 -7.66 16 20 C -0.52 -29.11 7.73 25.60 0.20 -28.91 16 21 H 0.07 3.83 6.88 -2.91 -0.02 3.81 16 22 C 0.01 0.65 5.30 84.65 0.45 1.10 16 23 N -0.92 -55.19 11.32 21.45 0.24 -54.94 16 24 Si 0.97 43.79 29.54 68.60 2.03 45.81 16 25 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 26 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 27 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 28 H 0.02 0.68 4.97 -2.39 -0.01 0.67 16 29 H 0.07 1.30 6.16 -2.39 -0.01 1.28 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.10 0.98 6.06 -2.39 -0.01 0.96 16 32 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.10 2.48 6.23 -2.39 -0.01 2.47 16 36 H 0.12 2.38 7.05 -2.39 -0.02 2.36 16 37 H 0.19 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.19 0.84 5.96 -2.39 -0.01 0.83 16 39 H 0.17 -0.94 8.14 -2.39 -0.02 -0.96 16 40 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.16 -0.51 8.14 -2.39 -0.02 -0.53 16 42 H 0.03 1.19 5.51 -2.39 -0.01 1.18 16 43 H 0.09 3.32 6.21 -2.38 -0.01 3.30 16 44 H 0.10 2.81 3.32 -2.39 -0.01 2.80 16 45 H 0.04 2.02 5.74 -2.39 -0.01 2.01 16 46 H 0.06 3.73 6.07 -2.39 -0.01 3.71 16 47 H 0.03 1.53 6.73 -2.38 -0.02 1.51 16 48 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -95.36 373.67 0.87 -94.50 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.99 Total: 10.18 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 7.99 Total: -5.82 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -5.36 Total: -128.49 kcal Atomic # 8 Polarization: -53.68 SS G_CDS: -4.47 Total: -58.15 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 42.28 SS G_CDS: -0.30 Total: 41.97 kcal Total: -95.36 0.87 -94.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646855442.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.065 kcal (2) G-P(sol) polarization free energy of solvation -95.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds