Wall clock time and date at job start Wed Apr 1 2020 03:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46902 * 109.47315 * 2 1 4 4 C 1.46905 * 110.99567 * 298.17314 * 3 2 1 5 5 C 1.53003 * 109.47197 * 293.08939 * 4 3 2 6 6 S 1.81395 * 109.47036 * 184.95190 * 5 4 3 7 7 C 1.81398 * 101.92098 * 180.02562 * 6 5 4 8 8 O 1.42101 * 108.58018 * 294.49061 * 6 5 4 9 9 O 1.42105 * 108.57812 * 65.51318 * 6 5 4 10 10 C 1.38575 * 111.00072 * 62.12731 * 3 2 1 11 11 N 1.31216 * 126.47559 * 236.02031 * 10 3 2 12 12 N 1.28520 * 109.86609 * 180.02562 * 11 10 3 13 13 C 1.30293 * 110.05209 * 0.02562 * 12 11 10 14 14 C 1.50700 * 126.34781 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47306 * 120.19696 * 14 13 12 16 16 C 1.52995 * 109.47454 * 0.19547 * 14 13 12 17 17 C 1.50700 * 109.47187 * 240.19707 * 14 13 12 18 18 H 1.08008 * 119.99972 * 2.81826 * 17 14 13 19 19 C 1.37872 * 120.00376 * 183.09214 * 17 14 13 20 20 N 1.31515 * 120.00245 * 352.36315 * 19 17 14 21 21 Si 1.86797 * 120.00265 * 172.36660 * 19 17 14 22 22 H 1.48498 * 109.47628 * 94.98800 * 21 19 17 23 23 H 1.48502 * 109.47425 * 214.98731 * 21 19 17 24 24 H 1.48503 * 109.47296 * 334.98914 * 21 19 17 25 25 N 1.36454 * 126.47597 * 56.33394 * 10 3 2 26 26 C 1.46496 * 127.13391 * 0.02562 * 25 10 3 27 27 H 1.08998 * 109.46612 * 66.79356 * 1 2 3 28 28 H 1.08991 * 109.47432 * 186.79291 * 1 2 3 29 29 H 1.08995 * 109.47113 * 306.79990 * 1 2 3 30 30 H 1.09000 * 109.47233 * 239.99381 * 2 1 3 31 31 H 1.09002 * 109.46717 * 119.99445 * 2 1 3 32 32 H 1.08999 * 109.47287 * 53.09353 * 4 3 2 33 33 H 1.08999 * 109.46766 * 173.09529 * 4 3 2 34 34 H 1.09000 * 109.47256 * 304.95632 * 5 4 3 35 35 H 1.09000 * 109.46598 * 64.95213 * 5 4 3 36 36 H 1.09004 * 109.47515 * 60.00154 * 7 6 5 37 37 H 1.08998 * 109.46989 * 180.02562 * 7 6 5 38 38 H 1.08996 * 109.47004 * 300.00097 * 7 6 5 39 39 H 1.08999 * 109.47152 * 187.48030 * 15 14 13 40 40 H 1.08993 * 109.47575 * 307.48688 * 15 14 13 41 41 H 1.09006 * 109.46704 * 67.48796 * 15 14 13 42 42 H 1.09002 * 109.47330 * 303.78886 * 16 14 13 43 43 H 1.09007 * 109.46945 * 63.78408 * 16 14 13 44 44 H 1.08998 * 109.47740 * 183.78507 * 16 14 13 45 45 H 0.96990 * 120.00490 * 179.97438 * 20 19 17 46 46 H 1.09007 * 109.46888 * 274.29302 * 26 25 10 47 47 H 1.09002 * 109.47622 * 34.29696 * 26 25 10 48 48 H 1.09006 * 109.47210 * 154.30024 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5847 2.0971 -1.2090 5 6 2.2702 1.4883 -2.4340 6 16 1.8481 2.4584 -3.9075 7 6 2.7497 1.5737 -5.2094 8 8 0.4546 2.3263 -4.1526 9 8 2.4083 3.7571 -3.7704 10 6 1.6151 2.0548 1.1436 11 7 0.9348 3.1758 1.1915 12 7 0.7332 3.5124 2.4154 13 6 1.2689 2.6337 3.2144 14 6 1.2508 2.6682 4.7209 15 6 0.5561 1.4125 5.2516 16 6 0.4914 3.9094 5.1936 17 6 2.6650 2.7170 5.2393 18 1 3.4925 2.7684 4.5470 19 6 2.9029 2.6902 6.5971 20 7 1.8989 2.7738 7.4424 21 14 4.6513 2.5354 7.2361 22 1 5.1940 3.8869 7.5261 23 1 4.6538 1.7238 8.4798 24 1 5.4963 1.8723 6.2106 25 7 1.8539 1.6764 2.4327 26 6 2.5844 0.4900 2.8852 27 1 -0.3632 0.4050 -0.9445 28 1 -0.3634 -1.0203 0.1215 29 1 -0.3633 0.6156 0.8228 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 0.5037 2.0063 -1.3150 33 1 1.8547 3.1500 -1.1274 34 1 3.3505 1.4994 -2.2888 35 1 1.9319 0.4606 -2.5663 36 1 2.3970 0.5436 -5.2601 37 1 2.5784 2.0643 -6.1676 38 1 3.8158 1.5820 -4.9829 39 1 0.4242 1.4986 6.3301 40 1 -0.4177 1.3065 4.7737 41 1 1.1673 0.5377 5.0290 42 1 0.9463 4.8004 4.7608 43 1 -0.5491 3.8418 4.8756 44 1 0.5358 3.9705 6.2810 45 1 2.0662 2.7546 8.3976 46 1 1.9042 -0.3608 2.9288 47 1 3.3933 0.2731 2.1875 48 1 2.9991 0.6746 3.8763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647680459.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:02 Heat of formation + Delta-G solvation = 25.391948 kcal Electronic energy + Delta-G solvation = -29715.012093 eV Core-core repulsion = 25741.907388 eV Total energy + Delta-G solvation = -3973.104705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.33544 -38.46188 -37.24184 -36.27964 -35.72695 -34.15772 -32.02339 -31.53908 -30.42226 -29.90990 -27.63063 -26.92100 -25.71111 -25.35202 -24.48805 -22.35791 -21.82167 -19.93392 -19.13413 -18.97740 -17.38911 -16.80848 -16.64332 -16.35369 -16.20339 -15.69318 -15.53497 -15.09924 -14.90031 -14.42865 -13.80262 -13.68942 -13.62235 -13.51117 -13.30373 -13.08427 -12.85589 -12.56772 -12.33230 -12.31660 -12.24251 -12.04932 -11.76566 -11.62853 -11.42457 -11.36828 -11.16111 -11.06520 -10.97422 -10.87047 -10.79077 -10.58149 -10.29862 -10.17141 -9.86028 -9.81216 -9.47954 -9.24195 -8.97714 -8.48193 -7.65358 -6.16922 -4.28175 -0.38208 2.41041 2.47186 2.79999 3.18415 3.26958 3.28186 3.33809 3.64254 3.66921 3.96017 4.24163 4.27445 4.34540 4.38235 4.62788 4.71348 4.92752 5.06394 5.07280 5.14111 5.20774 5.22510 5.32428 5.40045 5.49425 5.56194 5.58419 5.71935 5.87523 6.00755 6.05954 6.09781 6.47802 6.59238 6.71051 6.78829 6.83686 7.04410 7.19818 7.30384 7.48680 7.54245 7.74722 7.86374 8.04279 8.21197 8.68989 9.37155 9.58045 10.84152 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.020223 B = 0.002752 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.223755 B =10171.187583 C =10312.379282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.038 3.962 3 N -0.439 5.439 4 C 0.080 3.920 5 C -0.615 4.615 6 S 2.426 3.574 7 C -0.656 4.656 8 O -0.936 6.936 9 O -0.931 6.931 10 C 0.316 3.684 11 N -0.328 5.328 12 N -0.310 5.310 13 C 0.248 3.752 14 C 0.145 3.855 15 C -0.128 4.128 16 C -0.119 4.119 17 C -0.516 4.516 18 H 0.056 0.944 19 C 0.074 3.926 20 N -0.876 5.876 21 Si 0.894 3.106 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.274 1.274 25 N -0.473 5.473 26 C 0.074 3.926 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.144 0.856 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.090 0.910 40 H 0.013 0.987 41 H 0.031 0.969 42 H 0.035 0.965 43 H 0.016 0.984 44 H 0.092 0.908 45 H 0.264 0.736 46 H 0.066 0.934 47 H 0.076 0.924 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.346 -11.069 -18.900 22.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.089 4.089 3 N -0.162 5.162 4 C -0.048 4.048 5 C -0.744 4.744 6 S 2.606 3.394 7 C -0.805 4.805 8 O -0.933 6.933 9 O -0.928 6.928 10 C -0.041 4.041 11 N -0.172 5.172 12 N -0.147 5.147 13 C -0.020 4.020 14 C 0.142 3.858 15 C -0.187 4.187 16 C -0.177 4.177 17 C -0.555 4.555 18 H 0.074 0.926 19 C -0.129 4.129 20 N -0.513 5.513 21 Si 0.721 3.279 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.199 1.199 25 N -0.166 5.166 26 C -0.069 4.069 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.162 0.838 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.108 0.892 40 H 0.032 0.968 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.035 0.965 44 H 0.110 0.890 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.095 0.905 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.558 -9.123 -19.264 21.372 hybrid contribution 1.639 -2.151 0.706 2.795 sum 3.196 -11.274 -18.558 21.948 Atomic orbital electron populations 1.22439 0.96668 1.02870 1.03123 1.22513 0.94336 0.88110 1.03954 1.58851 1.56493 1.02383 0.98462 1.21609 0.98719 0.99259 0.85223 1.30522 1.12446 1.14941 1.16443 1.07746 0.76316 0.77002 0.78332 1.30281 1.15540 1.15383 1.19326 1.93613 1.28681 1.86891 1.84154 1.93635 1.80010 1.33894 1.85278 1.22228 1.01673 0.96397 0.83773 1.74444 1.16741 1.11227 1.14835 1.73983 1.22409 1.23417 0.94893 1.26081 0.93001 0.84859 0.98041 1.16918 0.96846 0.94622 0.77415 1.21851 0.96075 0.96678 1.04054 1.21668 0.95708 0.96449 1.03868 1.20872 0.90216 1.52652 0.91737 0.92562 1.24843 0.97149 0.94323 0.96583 1.69830 1.30302 1.48614 1.02573 0.86552 0.84524 0.78366 0.78448 1.20535 1.20974 1.19899 1.45908 1.43642 1.22333 1.04747 1.22205 0.95882 0.84840 1.03980 0.91692 0.91429 0.92010 0.89215 0.89673 0.90993 0.87567 0.83787 0.84966 0.85377 0.85204 0.85228 0.89173 0.96819 0.94990 0.94585 0.96461 0.88985 0.92575 0.91578 0.90497 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.20 9.25 37.16 0.34 -1.86 16 2 C 0.04 0.41 5.72 -3.82 -0.02 0.39 16 3 N -0.44 -6.13 4.77 -174.50 -0.83 -6.97 16 4 C 0.08 1.01 4.26 -3.82 -0.02 1.00 16 5 C -0.61 -4.32 5.63 37.16 0.21 -4.11 16 6 S 2.43 18.77 5.36 -107.50 -0.58 18.19 16 7 C -0.66 -2.20 10.62 101.05 1.07 -1.12 16 8 O -0.94 -10.78 18.10 -57.83 -1.05 -11.83 16 9 O -0.93 -11.44 18.10 -57.83 -1.05 -12.49 16 10 C 0.32 5.91 5.77 -318.88 -1.84 4.06 16 11 N -0.33 -7.23 11.14 30.31 0.34 -6.90 16 12 N -0.31 -7.50 11.48 32.99 0.38 -7.12 16 13 C 0.25 5.67 6.27 -154.02 -0.97 4.71 16 14 C 0.14 3.43 0.50 -156.81 -0.08 3.35 16 15 C -0.13 -2.82 7.92 37.16 0.29 -2.53 16 16 C -0.12 -2.91 7.83 37.16 0.29 -2.62 16 17 C -0.52 -12.89 6.33 -34.44 -0.22 -13.11 16 18 H 0.06 1.44 7.60 -52.48 -0.40 1.05 16 19 C 0.07 1.85 5.12 -17.82 -0.09 1.75 16 20 N -0.88 -22.30 9.47 55.43 0.52 -21.77 16 21 Si 0.89 19.57 29.54 -169.99 -5.02 14.55 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 25 N -0.47 -9.14 3.21 -121.46 -0.39 -9.53 16 26 C 0.07 1.14 8.08 59.84 0.48 1.63 16 27 H 0.06 0.70 6.66 -51.93 -0.35 0.36 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.94 7.07 -51.93 -0.37 0.57 16 30 H 0.09 0.65 6.53 -51.93 -0.34 0.31 16 31 H 0.08 0.89 5.35 -51.93 -0.28 0.62 16 32 H 0.07 0.93 6.17 -51.93 -0.32 0.61 16 33 H 0.11 1.56 7.72 -51.93 -0.40 1.16 16 34 H 0.14 0.75 8.14 -51.92 -0.42 0.32 16 35 H 0.13 0.52 6.78 -51.92 -0.35 0.17 16 36 H 0.13 0.17 8.14 -51.92 -0.42 -0.25 16 37 H 0.13 0.40 8.14 -51.92 -0.42 -0.03 16 38 H 0.13 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.09 2.13 6.37 -51.93 -0.33 1.80 16 40 H 0.01 0.27 8.13 -51.93 -0.42 -0.15 16 41 H 0.03 0.64 6.46 -51.93 -0.34 0.30 16 42 H 0.03 0.90 8.12 -51.93 -0.42 0.48 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 2.36 5.95 -51.93 -0.31 2.05 16 45 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 46 H 0.07 0.86 7.60 -51.92 -0.39 0.47 16 47 H 0.08 1.00 7.85 -51.93 -0.41 0.59 16 48 H 0.12 2.03 5.71 -51.93 -0.30 1.74 16 LS Contribution 383.01 15.07 5.77 5.77 Total: -1.00 -35.62 383.01 -9.83 -45.44 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.39 Total: 1.11 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -0.54 Total: -8.46 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.02 Total: -52.29 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -2.09 Total: -24.32 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Atomic # 16 Polarization: 18.77 SS G_CDS: -0.58 Total: 18.19 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.62 -9.83 -45.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647680459.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.836 kcal (2) G-P(sol) polarization free energy of solvation -35.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds