Wall clock time and date at job start Wed Apr 1 2020 03:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46902 * 109.47315 * 2 1 4 4 C 1.46905 * 110.99567 * 298.17314 * 3 2 1 5 5 C 1.53003 * 109.47197 * 293.08939 * 4 3 2 6 6 S 1.81395 * 109.47036 * 184.95190 * 5 4 3 7 7 C 1.81398 * 101.92098 * 180.02562 * 6 5 4 8 8 O 1.42101 * 108.58018 * 294.49061 * 6 5 4 9 9 O 1.42105 * 108.57812 * 65.51318 * 6 5 4 10 10 C 1.38575 * 111.00072 * 62.12731 * 3 2 1 11 11 N 1.31216 * 126.47559 * 236.02031 * 10 3 2 12 12 N 1.28520 * 109.86609 * 180.02562 * 11 10 3 13 13 C 1.30293 * 110.05209 * 0.02562 * 12 11 10 14 14 C 1.50700 * 126.34781 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47306 * 120.19696 * 14 13 12 16 16 C 1.52995 * 109.47454 * 0.19547 * 14 13 12 17 17 C 1.50700 * 109.47187 * 240.19707 * 14 13 12 18 18 H 1.08008 * 119.99972 * 2.81826 * 17 14 13 19 19 C 1.37872 * 120.00376 * 183.09214 * 17 14 13 20 20 N 1.31515 * 120.00245 * 352.36315 * 19 17 14 21 21 Si 1.86797 * 120.00265 * 172.36660 * 19 17 14 22 22 H 1.48498 * 109.47628 * 94.98800 * 21 19 17 23 23 H 1.48502 * 109.47425 * 214.98731 * 21 19 17 24 24 H 1.48503 * 109.47296 * 334.98914 * 21 19 17 25 25 N 1.36454 * 126.47597 * 56.33394 * 10 3 2 26 26 C 1.46496 * 127.13391 * 0.02562 * 25 10 3 27 27 H 1.08998 * 109.46612 * 66.79356 * 1 2 3 28 28 H 1.08991 * 109.47432 * 186.79291 * 1 2 3 29 29 H 1.08995 * 109.47113 * 306.79990 * 1 2 3 30 30 H 1.09000 * 109.47233 * 239.99381 * 2 1 3 31 31 H 1.09002 * 109.46717 * 119.99445 * 2 1 3 32 32 H 1.08999 * 109.47287 * 53.09353 * 4 3 2 33 33 H 1.08999 * 109.46766 * 173.09529 * 4 3 2 34 34 H 1.09000 * 109.47256 * 304.95632 * 5 4 3 35 35 H 1.09000 * 109.46598 * 64.95213 * 5 4 3 36 36 H 1.09004 * 109.47515 * 60.00154 * 7 6 5 37 37 H 1.08998 * 109.46989 * 180.02562 * 7 6 5 38 38 H 1.08996 * 109.47004 * 300.00097 * 7 6 5 39 39 H 1.08999 * 109.47152 * 187.48030 * 15 14 13 40 40 H 1.08993 * 109.47575 * 307.48688 * 15 14 13 41 41 H 1.09006 * 109.46704 * 67.48796 * 15 14 13 42 42 H 1.09002 * 109.47330 * 303.78886 * 16 14 13 43 43 H 1.09007 * 109.46945 * 63.78408 * 16 14 13 44 44 H 1.08998 * 109.47740 * 183.78507 * 16 14 13 45 45 H 0.96990 * 120.00490 * 179.97438 * 20 19 17 46 46 H 1.09007 * 109.46888 * 274.29302 * 26 25 10 47 47 H 1.09002 * 109.47622 * 34.29696 * 26 25 10 48 48 H 1.09006 * 109.47210 * 154.30024 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5847 2.0971 -1.2090 5 6 2.2702 1.4883 -2.4340 6 16 1.8481 2.4584 -3.9075 7 6 2.7497 1.5737 -5.2094 8 8 0.4546 2.3263 -4.1526 9 8 2.4083 3.7571 -3.7704 10 6 1.6151 2.0548 1.1436 11 7 0.9348 3.1758 1.1915 12 7 0.7332 3.5124 2.4154 13 6 1.2689 2.6337 3.2144 14 6 1.2508 2.6682 4.7209 15 6 0.5561 1.4125 5.2516 16 6 0.4914 3.9094 5.1936 17 6 2.6650 2.7170 5.2393 18 1 3.4925 2.7684 4.5470 19 6 2.9029 2.6902 6.5971 20 7 1.8989 2.7738 7.4424 21 14 4.6513 2.5354 7.2361 22 1 5.1940 3.8869 7.5261 23 1 4.6538 1.7238 8.4798 24 1 5.4963 1.8723 6.2106 25 7 1.8539 1.6764 2.4327 26 6 2.5844 0.4900 2.8852 27 1 -0.3632 0.4050 -0.9445 28 1 -0.3634 -1.0203 0.1215 29 1 -0.3633 0.6156 0.8228 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 0.5037 2.0063 -1.3150 33 1 1.8547 3.1500 -1.1274 34 1 3.3505 1.4994 -2.2888 35 1 1.9319 0.4606 -2.5663 36 1 2.3970 0.5436 -5.2601 37 1 2.5784 2.0643 -6.1676 38 1 3.8158 1.5820 -4.9829 39 1 0.4242 1.4986 6.3301 40 1 -0.4177 1.3065 4.7737 41 1 1.1673 0.5377 5.0290 42 1 0.9463 4.8004 4.7608 43 1 -0.5491 3.8418 4.8756 44 1 0.5358 3.9705 6.2810 45 1 2.0662 2.7546 8.3976 46 1 1.9042 -0.3608 2.9288 47 1 3.3933 0.2731 2.1875 48 1 2.9991 0.6746 3.8763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647680459.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:01 Heat of formation + Delta-G solvation = -0.686381 kcal Electronic energy + Delta-G solvation = -29716.142934 eV Core-core repulsion = 25741.907388 eV Total energy + Delta-G solvation = -3974.235546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.89259 -39.57238 -37.97476 -37.53120 -37.00665 -35.64650 -33.46664 -32.73914 -31.57186 -30.30715 -29.10043 -28.24099 -27.59195 -27.28759 -25.43272 -23.51104 -23.47902 -21.21769 -20.63230 -19.76893 -18.58248 -18.12179 -17.81464 -17.28572 -17.06827 -16.95612 -16.68794 -16.64312 -16.09855 -15.55545 -15.23164 -14.75614 -14.54541 -14.42307 -14.06960 -14.00345 -13.88302 -13.84564 -13.50771 -13.33399 -13.26474 -13.09260 -13.00574 -12.98094 -12.90710 -12.73715 -12.60001 -12.51196 -12.36142 -12.21680 -11.98686 -11.92430 -11.84705 -11.68526 -11.48533 -11.37491 -11.04574 -10.94164 -10.55554 -10.40577 -9.16353 -8.07459 -6.24662 -0.93980 0.99703 1.42299 1.44272 1.48667 1.55863 1.90911 1.99823 2.44529 2.59201 2.90639 3.14710 3.15201 3.51072 3.68588 3.74391 3.93123 4.01038 4.07799 4.17229 4.22347 4.26692 4.31806 4.36494 4.40793 4.44076 4.55712 4.68864 4.73203 4.78715 4.82372 4.89500 4.95804 4.96954 5.04025 5.12164 5.16064 5.23574 5.35478 5.51612 5.54551 5.62144 5.71268 5.94766 6.07031 6.27449 6.33286 6.74044 7.42669 7.95629 8.92838 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.020223 B = 0.002752 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.223755 B =10171.187583 C =10312.379282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.033 3.967 3 N -0.431 5.431 4 C 0.069 3.931 5 C -0.600 4.600 6 S 2.417 3.583 7 C -0.624 4.624 8 O -0.986 6.986 9 O -0.992 6.992 10 C 0.340 3.660 11 N -0.371 5.371 12 N -0.347 5.347 13 C 0.227 3.773 14 C 0.143 3.857 15 C -0.114 4.114 16 C -0.108 4.108 17 C -0.523 4.523 18 H 0.045 0.955 19 C 0.039 3.961 20 N -0.895 5.895 21 Si 0.950 3.050 22 H -0.288 1.288 23 H -0.277 1.277 24 H -0.266 1.266 25 N -0.472 5.472 26 C 0.068 3.932 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.016 0.984 30 H 0.141 0.859 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.171 0.829 35 H 0.176 0.824 36 H 0.162 0.838 37 H 0.137 0.863 38 H 0.157 0.843 39 H 0.072 0.928 40 H 0.016 0.984 41 H 0.048 0.952 42 H 0.015 0.985 43 H 0.017 0.983 44 H 0.079 0.921 45 H 0.266 0.734 46 H 0.094 0.906 47 H 0.107 0.893 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.641 -15.063 -21.177 26.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.093 4.093 3 N -0.155 5.155 4 C -0.059 4.059 5 C -0.729 4.729 6 S 2.604 3.396 7 C -0.778 4.778 8 O -0.983 6.983 9 O -0.990 6.990 10 C -0.018 4.018 11 N -0.215 5.215 12 N -0.185 5.185 13 C -0.043 4.043 14 C 0.140 3.860 15 C -0.173 4.173 16 C -0.167 4.167 17 C -0.562 4.562 18 H 0.063 0.937 19 C -0.163 4.163 20 N -0.533 5.533 21 Si 0.776 3.224 22 H -0.215 1.215 23 H -0.203 1.203 24 H -0.190 1.190 25 N -0.166 5.166 26 C -0.073 4.073 27 H 0.086 0.914 28 H 0.112 0.888 29 H 0.035 0.965 30 H 0.159 0.841 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.189 0.811 35 H 0.193 0.807 36 H 0.180 0.820 37 H 0.156 0.844 38 H 0.175 0.825 39 H 0.091 0.909 40 H 0.035 0.965 41 H 0.067 0.933 42 H 0.035 0.965 43 H 0.036 0.964 44 H 0.097 0.903 45 H 0.075 0.925 46 H 0.112 0.888 47 H 0.125 0.875 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.824 -13.107 -21.527 25.492 hybrid contribution 0.959 -0.984 1.272 1.873 sum 4.784 -14.092 -20.254 25.134 Atomic orbital electron populations 1.22430 0.97423 1.03517 1.01468 1.22834 0.93692 0.85881 1.06894 1.59085 1.55832 1.03708 0.96920 1.21664 0.99015 0.98296 0.86908 1.30422 1.13616 1.16336 1.12554 1.07580 0.75644 0.76760 0.79616 1.30006 1.15897 1.15926 1.15943 1.93551 1.32164 1.87559 1.85074 1.93564 1.80533 1.38298 1.86560 1.22735 0.98845 0.95197 0.85007 1.74340 1.19381 1.13722 1.14042 1.73859 1.23716 1.24857 0.96053 1.25771 0.94513 0.86192 0.97783 1.16826 0.96304 0.94486 0.78368 1.21673 0.96363 0.96614 1.02641 1.21538 0.95843 0.96604 1.02689 1.20914 0.90413 1.53019 0.91852 0.93715 1.25433 1.00233 0.93995 0.96618 1.69924 1.31749 1.48836 1.02745 0.85673 0.80762 0.77793 0.78175 1.21462 1.20265 1.19007 1.46007 1.43423 1.22649 1.04476 1.22462 0.97080 0.84085 1.03668 0.91363 0.88808 0.96484 0.84140 0.88897 0.92023 0.90918 0.81096 0.80657 0.81997 0.84424 0.82509 0.90908 0.96488 0.93333 0.96533 0.96383 0.90267 0.92459 0.88803 0.87483 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.90 9.25 71.98 0.67 -3.23 16 2 C 0.03 0.56 5.72 86.30 0.49 1.06 16 3 N -0.43 -11.15 4.77 -706.00 -3.36 -14.51 16 4 C 0.07 1.69 4.26 86.30 0.37 2.06 16 5 C -0.60 -6.31 5.63 71.98 0.41 -5.90 16 6 S 2.42 34.01 5.36 -56.49 -0.30 33.70 16 7 C -0.62 -1.11 10.62 113.37 1.20 0.09 16 8 O -0.99 -22.58 18.10 -127.37 -2.30 -24.88 16 9 O -0.99 -25.12 18.10 -127.37 -2.31 -27.43 16 10 C 0.34 12.68 5.77 260.11 1.50 14.18 16 11 N -0.37 -17.10 11.14 -58.01 -0.65 -17.74 16 12 N -0.35 -17.70 11.48 -49.54 -0.57 -18.27 16 13 C 0.23 10.69 6.27 137.64 0.86 11.55 16 14 C 0.14 6.96 0.50 -53.68 -0.03 6.93 16 15 C -0.11 -5.08 7.92 71.98 0.57 -4.51 16 16 C -0.11 -5.58 7.83 71.98 0.56 -5.01 16 17 C -0.52 -26.51 6.33 25.60 0.16 -26.35 16 18 H 0.04 2.33 7.60 -2.91 -0.02 2.30 16 19 C 0.04 1.93 5.12 84.65 0.43 2.36 16 20 N -0.90 -46.09 9.47 21.45 0.20 -45.89 16 21 Si 0.95 39.96 29.54 68.60 2.03 41.98 16 22 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 23 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 25 N -0.47 -18.09 3.21 -538.18 -1.73 -19.82 16 26 C 0.07 1.96 8.08 127.77 1.03 2.99 16 27 H 0.07 1.34 6.66 -2.39 -0.02 1.33 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.02 0.49 7.07 -2.39 -0.02 0.47 16 30 H 0.14 1.06 6.53 -2.39 -0.02 1.04 16 31 H 0.09 1.50 5.35 -2.39 -0.01 1.49 16 32 H 0.06 1.61 6.17 -2.39 -0.01 1.60 16 33 H 0.07 2.25 7.72 -2.39 -0.02 2.24 16 34 H 0.17 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.18 0.29 6.78 -2.39 -0.02 0.27 16 36 H 0.16 -0.66 8.14 -2.39 -0.02 -0.68 16 37 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.16 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.07 3.49 6.37 -2.39 -0.02 3.47 16 40 H 0.02 0.70 8.13 -2.39 -0.02 0.68 16 41 H 0.05 1.93 6.46 -2.38 -0.02 1.92 16 42 H 0.02 0.85 8.12 -2.39 -0.02 0.83 16 43 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.08 4.24 5.95 -2.39 -0.01 4.22 16 45 H 0.27 13.06 8.31 -92.72 -0.77 12.29 16 46 H 0.09 2.15 7.60 -2.38 -0.02 2.13 16 47 H 0.11 2.39 7.85 -2.39 -0.02 2.37 16 48 H 0.10 3.25 5.71 -2.38 -0.01 3.23 16 Total: -1.00 -85.09 383.01 0.21 -84.88 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.97 Total: 11.76 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 8.24 Total: -3.78 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -6.10 Total: -116.23 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -4.61 Total: -52.31 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.98 kcal Atomic # 16 Polarization: 34.01 SS G_CDS: -0.30 Total: 33.70 kcal Total: -85.09 0.21 -84.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647680459.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.190 kcal (2) G-P(sol) polarization free energy of solvation -85.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds