Wall clock time and date at job start Wed Apr 1 2020 04:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00364 * 2 1 4 4 H 1.48497 * 109.46925 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46980 * 299.99622 * 3 2 1 6 6 H 1.48500 * 109.47110 * 59.99679 * 3 2 1 7 7 C 1.38820 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00099 * 197.03243 * 7 2 1 9 9 N 1.36933 * 119.99902 * 17.02849 * 7 2 1 10 10 C 1.47073 * 120.88472 * 206.58206 * 9 7 2 11 11 C 1.53241 * 108.52362 * 231.16466 * 10 9 7 12 12 N 1.46897 * 109.33969 * 306.16869 * 11 10 9 13 13 C 1.46899 * 110.99916 * 187.25205 * 12 11 10 14 14 C 1.52999 * 109.47430 * 170.00142 * 13 12 11 15 15 N 1.46494 * 109.47794 * 179.97438 * 14 13 12 16 16 C 1.34773 * 120.00586 * 179.97438 * 15 14 13 17 17 O 1.21561 * 119.99591 * 0.02562 * 16 15 14 18 18 C 1.47800 * 120.00355 * 179.97438 * 16 15 14 19 19 N 1.32292 * 120.58825 * 359.97438 * 18 16 15 20 20 C 1.32695 * 121.18896 * 180.02562 * 19 18 16 21 21 C 1.35482 * 122.11171 * 0.02562 * 20 19 18 22 22 N 1.36220 * 120.52457 * 359.95566 * 21 20 19 23 23 C 1.36160 * 133.92842 * 180.33206 * 22 21 20 24 24 C 1.35346 * 107.14180 * 180.11619 * 23 22 21 25 25 N 1.33558 * 108.61451 * 359.60862 * 24 23 22 26 26 C 1.31854 * 109.14215 * 0.24820 * 25 24 23 27 27 C 1.46898 * 111.26818 * 63.10436 * 12 11 10 28 28 C 1.47084 * 120.88098 * 26.56291 * 9 7 2 29 29 H 0.97002 * 120.00116 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.63437 * 111.45354 * 10 9 7 31 31 H 1.09000 * 109.78845 * 350.96741 * 10 9 7 32 32 H 1.08995 * 109.49431 * 186.20473 * 11 10 9 33 33 H 1.09001 * 109.49332 * 66.12693 * 11 10 9 34 34 H 1.09001 * 109.47586 * 49.99813 * 13 12 11 35 35 H 1.08999 * 109.47402 * 290.00011 * 13 12 11 36 36 H 1.09001 * 109.47004 * 59.99315 * 14 13 12 37 37 H 1.08999 * 109.46721 * 300.00286 * 14 13 12 38 38 H 0.97007 * 119.99815 * 0.02562 * 15 14 13 39 39 H 1.08000 * 118.94385 * 179.97438 * 20 19 18 40 40 H 1.07994 * 119.73933 * 179.97438 * 21 20 19 41 41 H 1.08003 * 126.43297 * 359.97438 * 23 22 21 42 42 H 1.08006 * 125.69238 * 179.88431 * 24 23 22 43 43 H 1.09003 * 109.49735 * 56.85425 * 27 12 11 44 44 H 1.08998 * 109.49225 * 176.93486 * 27 12 11 45 45 H 1.09004 * 109.63116 * 248.54622 * 28 9 7 46 46 H 1.09004 * 109.62846 * 9.12142 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0547 -1.2227 0.2745 9 7 1.3705 -2.3622 -0.3462 10 6 1.8307 -3.6610 0.1682 11 6 2.0022 -4.6200 -1.0146 12 7 0.7547 -4.6654 -1.7890 13 6 0.8184 -5.7004 -2.8295 14 6 -0.5691 -5.8901 -3.4458 15 7 -0.5056 -6.9218 -4.4839 16 6 -1.6170 -7.2596 -5.1673 17 8 -2.6721 -6.7078 -4.9226 18 6 -1.5527 -8.3000 -6.2150 19 7 -0.4103 -8.9069 -6.4919 20 6 -0.3389 -9.8423 -7.4305 21 6 -1.4210 -10.2239 -8.1507 22 7 -2.6366 -9.6503 -7.9296 23 6 -3.8741 -9.8206 -8.4715 24 6 -4.7064 -8.9567 -7.8447 25 7 -4.0066 -8.2757 -6.9335 26 6 -2.7508 -8.6765 -6.9646 27 6 0.4402 -3.3534 -2.3700 28 6 0.2047 -2.3425 -1.2428 29 1 -0.4850 0.8400 -0.0004 30 1 1.0917 -4.0630 0.8614 31 1 2.7846 -3.5377 0.6809 32 1 2.2362 -5.6176 -0.6430 33 1 2.8136 -4.2695 -1.6524 34 1 1.1513 -6.6397 -2.3879 35 1 1.5212 -5.3940 -3.6043 36 1 -0.9020 -4.9508 -3.8874 37 1 -1.2719 -6.1965 -2.6710 38 1 0.3364 -7.3623 -4.6789 39 1 0.6126 -10.3139 -7.6270 40 1 -1.3192 -10.9891 -8.9059 41 1 -4.1410 -10.5133 -9.2559 42 1 -5.7614 -8.8407 -8.0447 43 1 1.2734 -3.0204 -2.9889 44 1 -0.4587 -3.4324 -2.9814 45 1 -0.6907 -2.6177 -0.6853 46 1 0.0843 -1.3447 -1.6649 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660939136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:19 Heat of formation + Delta-G solvation = 120.177311 kcal Electronic energy + Delta-G solvation = -28924.974857 eV Core-core repulsion = 24852.829153 eV Total energy + Delta-G solvation = -4072.145704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.47161 -39.92434 -38.74088 -38.12535 -35.41247 -34.78307 -33.90790 -31.51859 -31.06574 -30.07817 -29.89584 -28.84519 -26.41772 -25.33812 -23.77169 -23.31074 -22.65252 -22.40848 -21.33917 -21.01822 -19.09432 -19.08072 -18.55781 -16.78537 -16.73077 -16.64403 -16.16238 -15.98901 -15.55283 -15.15595 -14.80358 -14.52097 -14.50356 -14.24685 -14.16992 -13.75722 -13.63411 -13.39797 -13.34310 -13.21440 -12.89346 -12.49500 -11.96127 -11.60632 -11.39226 -11.24636 -11.02787 -10.88661 -10.72481 -10.60507 -10.40781 -10.27365 -10.13787 -10.01374 -9.71221 -9.57324 -9.49406 -9.08676 -8.72047 -8.47128 -7.84284 -6.62548 -5.73703 -3.14904 -0.44763 0.67686 1.77050 2.25043 2.47259 2.68588 3.28583 3.40222 3.43716 3.47821 3.49919 3.51575 3.74952 4.07420 4.42342 4.51680 4.55281 4.67181 4.78854 4.83429 5.01059 5.18503 5.24067 5.43756 5.46917 5.53280 5.57955 5.86699 5.95118 5.99575 6.01003 6.09102 6.15649 6.17699 6.24541 6.33752 6.38159 6.58160 6.73347 6.85443 6.96756 7.28404 7.31189 7.39524 7.58873 7.68725 7.74211 7.85739 8.01965 8.47747 9.25487 9.89038 10.47570 11.35057 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.023811 B = 0.001848 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.631896 B =15146.811922 C =15778.271013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.148 3.852 11 C 0.046 3.954 12 N -0.529 5.529 13 C 0.045 3.955 14 C 0.121 3.879 15 N -0.706 5.706 16 C 0.569 3.431 17 O -0.490 6.490 18 C 0.185 3.815 19 N -0.428 5.428 20 C 0.029 3.971 21 C 0.035 3.965 22 N -0.358 5.358 23 C -0.081 4.081 24 C 0.034 3.966 25 N -0.431 5.431 26 C 0.189 3.811 27 C 0.030 3.970 28 C 0.177 3.823 29 H 0.253 0.747 30 H 0.026 0.974 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.028 0.972 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.408 0.592 39 H 0.186 0.814 40 H 0.177 0.823 41 H 0.192 0.808 42 H 0.190 0.810 43 H 0.026 0.974 44 H 0.065 0.935 45 H 0.028 0.972 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.014 -25.625 -19.955 32.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.083 4.083 12 N -0.254 5.254 13 C -0.084 4.084 14 C -0.003 4.003 15 N -0.359 5.359 16 C 0.350 3.650 17 O -0.361 6.361 18 C 0.019 3.981 19 N -0.143 5.143 20 C -0.111 4.111 21 C -0.090 4.090 22 N -0.032 5.032 23 C -0.214 4.214 24 C -0.118 4.118 25 N -0.151 5.151 26 C -0.058 4.058 27 C -0.099 4.099 28 C 0.051 3.949 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.243 0.757 39 H 0.203 0.797 40 H 0.194 0.806 41 H 0.209 0.791 42 H 0.207 0.793 43 H 0.044 0.956 44 H 0.083 0.917 45 H 0.046 0.954 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.752 -24.487 -18.574 30.857 hybrid contribution 1.069 -0.269 -1.961 2.249 sum -1.684 -24.756 -20.534 32.208 Atomic orbital electron populations 1.70039 1.05177 1.25363 1.54068 1.25035 0.95313 0.98352 1.01133 0.86233 0.79269 0.84071 0.77265 1.20360 1.21600 1.21746 1.19225 0.92571 0.84783 1.41515 0.91626 1.44133 1.34171 1.01246 1.52354 1.20970 0.97822 0.86498 0.92546 1.22623 0.89278 0.99511 0.96881 1.61866 1.34666 1.05757 1.23133 1.22189 0.94877 0.97024 0.94311 1.21486 0.98468 0.90721 0.89577 1.45719 1.11365 1.40857 1.37951 1.17163 0.84720 0.82001 0.81097 1.90944 1.28718 1.51609 1.64854 1.22235 0.84766 0.95988 0.95067 1.68088 1.24484 1.06788 1.14974 1.22110 0.98696 0.96648 0.93683 1.22786 0.83269 1.00301 1.02691 1.42924 1.07960 1.26404 1.25950 1.22840 0.82289 1.09110 1.07176 1.22975 1.00783 0.94071 0.93971 1.70712 0.99742 1.24326 1.20299 1.22523 0.94958 0.93649 0.94667 1.23014 0.98896 0.89195 0.98766 1.20875 0.88988 0.96588 0.88407 0.93648 0.95603 0.92596 0.91947 0.95341 0.90710 0.94826 0.90615 0.89929 0.75670 0.79691 0.80612 0.79121 0.79268 0.95568 0.91672 0.95395 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.64 11.15 55.49 0.62 -26.02 16 2 C 0.00 0.00 4.93 -17.43 -0.09 -0.08 16 3 Si 0.90 21.96 29.59 -169.99 -5.03 16.93 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.25 -7.00 9.63 -15.06 -0.15 -7.14 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 9 N -0.60 -15.28 3.04 -172.01 -0.52 -15.80 16 10 C 0.15 3.17 6.69 -3.60 -0.02 3.15 16 11 C 0.05 0.82 5.62 -3.70 -0.02 0.80 16 12 N -0.53 -9.30 4.63 -234.33 -1.08 -10.39 16 13 C 0.04 0.61 5.08 -3.83 -0.02 0.59 16 14 C 0.12 1.65 5.60 -4.05 -0.02 1.63 16 15 N -0.71 -8.46 5.55 -61.27 -0.34 -8.80 16 16 C 0.57 8.04 7.81 -12.35 -0.10 7.95 16 17 O -0.49 -8.82 16.23 5.31 0.09 -8.74 16 18 C 0.19 2.23 6.97 -80.54 -0.56 1.66 16 19 N -0.43 -3.89 9.67 -8.68 -0.08 -3.97 16 20 C 0.03 0.16 11.01 -18.16 -0.20 -0.04 16 21 C 0.03 0.17 11.00 -16.59 -0.18 -0.01 16 22 N -0.36 -2.98 2.95 -61.12 -0.18 -3.16 16 23 C -0.08 -0.53 11.80 -16.66 -0.20 -0.72 16 24 C 0.03 0.30 11.83 -17.83 -0.21 0.09 16 25 N -0.43 -5.88 10.74 -11.28 -0.12 -6.00 16 26 C 0.19 2.34 7.66 -153.98 -1.18 1.16 16 27 C 0.03 0.60 5.46 -3.70 -0.02 0.58 16 28 C 0.18 4.37 5.42 -3.60 -0.02 4.35 16 29 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 32 H 0.06 0.93 7.99 -51.93 -0.41 0.51 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.88 7.97 -51.93 -0.41 0.47 16 35 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 36 H 0.08 1.15 6.40 -51.93 -0.33 0.82 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.41 3.93 7.85 -40.82 -0.32 3.61 16 39 H 0.19 0.31 8.06 -52.49 -0.42 -0.11 16 40 H 0.18 0.09 8.06 -52.49 -0.42 -0.34 16 41 H 0.19 0.40 8.06 -52.48 -0.42 -0.02 16 42 H 0.19 1.02 8.06 -52.48 -0.42 0.60 16 43 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 1.19 6.16 -51.93 -0.32 0.87 16 45 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 2.42 6.12 -51.93 -0.32 2.10 16 LS Contribution 379.09 15.07 5.71 5.71 Total: -1.00 -36.64 379.09 -10.24 -46.88 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.31 Total: -0.59 kcal Atomic # 6 Polarization: 16.94 SS G_CDS: -2.99 Total: 13.96 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -1.71 Total: -74.15 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.64 -10.24 -46.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660939136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.057 kcal (2) G-P(sol) polarization free energy of solvation -36.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds