Wall clock time and date at job start Wed Apr 1 2020 04:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99716 * 2 1 4 4 H 1.48504 * 109.46892 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47418 * 300.00197 * 3 2 1 6 6 H 1.48500 * 109.46975 * 60.00472 * 3 2 1 7 7 C 1.38805 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.36946 * 120.00125 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64503 * 14.63353 * 9 7 2 11 11 C 1.54910 * 104.82705 * 155.90694 * 10 9 7 12 12 C 1.55151 * 101.58432 * 37.01169 * 11 10 9 13 13 C 1.47015 * 125.64962 * 194.67763 * 9 7 2 14 14 H 1.09003 * 109.88457 * 300.59814 * 13 9 7 15 15 C 1.52996 * 109.88280 * 61.60165 * 13 9 7 16 16 C 1.53000 * 109.47252 * 185.23848 * 15 13 9 17 17 C 1.53009 * 109.47023 * 174.95171 * 16 15 13 18 18 N 1.46506 * 109.46955 * 180.02562 * 17 16 15 19 19 C 1.34768 * 120.00072 * 179.97438 * 18 17 16 20 20 O 1.21527 * 119.99942 * 0.02562 * 19 18 17 21 21 C 1.48114 * 120.00374 * 180.02562 * 19 18 17 22 22 C 1.39822 * 119.37890 * 179.72903 * 21 19 18 23 23 C 1.36969 * 119.60903 * 179.76238 * 22 21 19 24 24 C 1.39806 * 118.25087 * 0.49623 * 23 22 21 25 25 N 1.34657 * 135.00379 * 179.74811 * 24 23 22 26 26 N 1.28672 * 109.16035 * 180.02562 * 25 24 23 27 27 N 1.28772 * 111.84585 * 359.97438 * 26 25 24 28 28 H 0.96998 * 125.85688 * 180.02562 * 27 26 25 29 29 C 1.37245 * 108.28399 * 0.02562 * 27 26 25 30 30 N 1.31956 * 134.71210 * 179.97438 * 29 27 26 31 31 H 0.96998 * 120.00044 * 359.97438 * 1 2 3 32 32 H 1.08998 * 110.36948 * 274.74374 * 10 9 7 33 33 H 1.09004 * 110.36922 * 37.07547 * 10 9 7 34 34 H 1.09007 * 111.00007 * 155.08208 * 11 10 9 35 35 H 1.08996 * 111.00809 * 278.89195 * 11 10 9 36 36 H 1.08999 * 110.72713 * 206.13107 * 12 11 10 37 37 H 1.09004 * 110.72288 * 82.85504 * 12 11 10 38 38 H 1.09004 * 109.46878 * 65.24230 * 15 13 9 39 39 H 1.09004 * 109.47464 * 305.24167 * 15 13 9 40 40 H 1.08998 * 109.47152 * 54.95716 * 16 15 13 41 41 H 1.09004 * 109.47229 * 294.94862 * 16 15 13 42 42 H 1.09004 * 109.46866 * 299.99913 * 17 16 15 43 43 H 1.08996 * 109.47153 * 60.00557 * 17 16 15 44 44 H 0.97004 * 119.99658 * 0.02562 * 18 17 16 45 45 H 1.07997 * 120.19191 * 359.97438 * 22 21 19 46 46 H 1.07999 * 120.87376 * 180.26492 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1079 -2.5525 -0.3027 11 6 -0.2477 -4.0214 -0.7746 12 6 0.7643 -4.7442 0.1531 13 6 1.8982 -3.7080 0.3016 14 1 2.7026 -3.9324 -0.3988 15 6 2.4357 -3.7265 1.7339 16 6 3.1447 -5.0568 1.9955 17 6 3.7904 -5.0266 3.3823 18 7 4.4698 -6.3003 3.6326 19 6 5.1138 -6.5027 4.7990 20 8 5.1306 -5.6289 5.6434 21 6 5.8011 -7.7901 5.0518 22 6 6.4701 -7.9840 6.2642 23 6 7.1031 -9.1746 6.5049 24 6 7.0637 -10.1577 5.5117 25 7 7.5543 -11.4055 5.3869 26 7 7.2172 -11.8790 4.2390 27 7 6.5214 -11.0359 3.5584 28 1 6.1625 -11.1821 2.6692 29 6 6.3747 -9.8950 4.3071 30 7 5.7753 -8.7341 4.1223 31 1 -0.4850 0.8400 0.0004 32 1 -0.7062 -2.3831 0.5925 33 1 -0.4092 -1.8689 -1.0964 34 1 -1.2604 -4.3898 -0.6103 35 1 0.0383 -4.1244 -1.8213 36 1 1.1341 -5.6561 -0.3157 37 1 0.3125 -4.9628 1.1207 38 1 1.6081 -3.6120 2.4341 39 1 3.1411 -2.9063 1.8679 40 1 3.9144 -5.2131 1.2398 41 1 2.4200 -5.8699 1.9498 42 1 4.5150 -4.2136 3.4280 43 1 3.0208 -4.8704 4.1382 44 1 4.4566 -6.9976 2.9583 45 1 6.4846 -7.2010 7.0078 46 1 7.6223 -9.3478 7.4359 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663066284.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:09 Heat of formation + Delta-G solvation = 107.592319 kcal Electronic energy + Delta-G solvation = -28505.094413 eV Core-core repulsion = 24432.402984 eV Total energy + Delta-G solvation = -4072.691430 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.96318 -40.59812 -38.83399 -37.84240 -35.70921 -34.87618 -33.12546 -32.46530 -32.12605 -31.44563 -29.40781 -28.24831 -26.29966 -24.91349 -24.47964 -23.79160 -23.30285 -21.58858 -21.28189 -20.15347 -19.48563 -19.21866 -18.98097 -18.23182 -17.19206 -16.77090 -16.21865 -15.87504 -15.74054 -15.08798 -14.86413 -14.62933 -14.28811 -14.09231 -13.84770 -13.62293 -13.49836 -12.95300 -12.86540 -12.38321 -12.35846 -12.26585 -12.06546 -11.93576 -11.73978 -11.49178 -11.05001 -10.87547 -10.81993 -10.65757 -10.58508 -10.13734 -10.04502 -9.99152 -9.86887 -9.77300 -9.69087 -9.62951 -9.61709 -9.23680 -8.56802 -6.75792 -5.73508 -3.08546 -0.49278 0.36791 1.50294 1.51466 2.30549 2.71283 3.12565 3.17872 3.39320 3.45596 3.47542 3.61479 3.76080 4.16441 4.24200 4.49654 4.76683 4.81406 4.95632 5.13894 5.15535 5.27264 5.35609 5.44518 5.58514 5.60205 5.65773 5.71057 5.83688 5.91829 5.95911 5.98943 6.08834 6.21879 6.30097 6.34438 6.42033 6.56511 6.69817 6.71374 6.72566 6.95451 7.16850 7.24627 7.51177 7.56077 7.64892 7.81870 7.83668 8.30926 9.21972 9.83590 10.52892 11.38950 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018095 B = 0.001860 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.000372 B =15049.538453 C =16056.825839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.225 4.225 8 H 0.075 0.925 9 N -0.596 5.596 10 C 0.173 3.827 11 C -0.151 4.151 12 C -0.124 4.124 13 C 0.162 3.838 14 H 0.031 0.969 15 C -0.122 4.122 16 C -0.128 4.128 17 C 0.115 3.885 18 N -0.703 5.703 19 C 0.567 3.433 20 O -0.521 6.521 21 C 0.154 3.846 22 C -0.121 4.121 23 C 0.000 4.000 24 C -0.024 4.024 25 N -0.238 5.238 26 N 0.012 4.988 27 N -0.401 5.401 28 H 0.460 0.540 29 C 0.216 3.784 30 N -0.446 5.446 31 H 0.252 0.748 32 H 0.024 0.976 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.410 0.590 45 H 0.169 0.831 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.053 -22.123 8.777 26.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.354 4.354 8 H 0.092 0.908 9 N -0.320 5.320 10 C 0.048 3.952 11 C -0.189 4.189 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.162 4.162 16 C -0.166 4.166 17 C -0.008 4.008 18 N -0.354 5.354 19 C 0.350 3.650 20 O -0.396 6.396 21 C -0.001 4.001 22 C -0.145 4.145 23 C -0.031 4.031 24 C -0.152 4.152 25 N -0.115 5.115 26 N 0.029 4.971 27 N -0.133 5.133 28 H 0.309 0.691 29 C -0.028 4.028 30 N -0.162 5.162 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.245 0.755 45 H 0.186 0.814 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 11.215 -22.519 8.617 26.592 hybrid contribution 0.121 1.221 -0.258 1.253 sum 11.337 -21.298 8.359 25.534 Atomic orbital electron populations 1.69950 1.04977 1.24984 1.56547 1.24905 0.95667 0.97772 1.01948 0.86106 0.78881 0.83936 0.77228 1.20449 1.21829 1.21707 1.19004 0.90337 0.82325 1.43726 0.90763 1.44553 1.06182 1.01339 1.79976 1.21403 0.85220 0.89985 0.98604 1.23013 0.97508 0.99848 0.98564 1.22589 0.97182 0.97108 0.99338 1.20924 0.93911 0.87014 0.92686 0.95169 1.22034 0.99888 0.94534 0.99755 1.21847 0.99868 1.00390 0.94508 1.21663 0.96610 0.84238 0.98276 1.45993 1.52694 1.19017 1.17674 1.17668 0.79329 0.85124 0.82909 1.90853 1.60582 1.43092 1.45076 1.21319 0.95983 0.92468 0.90285 1.21783 0.96480 0.98341 0.97873 1.20558 0.95477 0.89359 0.97712 1.20704 1.02445 0.95262 0.96740 1.75445 1.19749 1.07414 1.08875 1.78142 1.04271 1.14939 0.99787 1.44712 1.41137 1.08998 1.18454 0.69127 1.19777 1.01091 0.90371 0.91590 1.66264 1.18541 0.98789 1.32647 0.93792 0.95820 0.91321 0.92584 0.92519 0.92687 0.92035 0.92169 0.91521 0.91636 0.91624 0.90807 0.90891 0.75450 0.81370 0.82083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.72 10.58 55.49 0.59 -26.14 16 2 C -0.01 -0.17 5.47 -17.43 -0.10 -0.27 16 3 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.23 -6.11 9.71 -15.06 -0.15 -6.26 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.60 -14.70 3.13 -162.58 -0.51 -15.20 16 10 C 0.17 4.13 5.41 -2.53 -0.01 4.12 16 11 C -0.15 -2.78 7.08 -24.59 -0.17 -2.96 16 12 C -0.12 -2.05 5.71 -24.90 -0.14 -2.19 16 13 C 0.16 3.14 3.16 -66.96 -0.21 2.92 16 14 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 15 C -0.12 -2.06 4.71 -26.73 -0.13 -2.19 16 16 C -0.13 -1.56 5.10 -26.73 -0.14 -1.70 16 17 C 0.11 1.37 5.68 -4.03 -0.02 1.35 16 18 N -0.70 -7.31 5.54 -61.16 -0.34 -7.64 16 19 C 0.57 6.41 7.81 -12.21 -0.10 6.31 16 20 O -0.52 -7.38 16.29 5.34 0.09 -7.29 16 21 C 0.15 1.43 6.74 -82.93 -0.56 0.87 16 22 C -0.12 -0.88 9.55 -39.45 -0.38 -1.26 16 23 C 0.00 0.00 10.16 -39.46 -0.40 -0.40 16 24 C -0.02 -0.21 7.38 -84.90 -0.63 -0.84 16 25 N -0.24 -2.30 12.43 32.12 0.40 -1.90 16 26 N 0.01 0.10 13.28 60.35 0.80 0.90 16 27 N -0.40 -2.60 7.06 31.13 0.22 -2.38 16 28 H 0.46 1.29 8.96 -190.26 -1.71 -0.41 16 29 C 0.22 1.83 8.56 -156.28 -1.34 0.50 16 30 N -0.45 -3.94 9.54 -8.91 -0.08 -4.03 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.02 0.62 8.06 -51.93 -0.42 0.20 16 33 H 0.07 1.84 6.93 -51.93 -0.36 1.48 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.97 7.76 -51.93 -0.40 0.57 16 38 H 0.06 1.08 8.02 -51.93 -0.42 0.67 16 39 H 0.07 1.25 7.84 -51.93 -0.41 0.85 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.73 7.65 -51.93 -0.40 0.33 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.41 3.55 7.78 -40.82 -0.32 3.23 16 45 H 0.17 1.02 7.61 -52.49 -0.40 0.62 16 46 H 0.16 0.57 8.06 -52.49 -0.42 0.14 16 LS Contribution 382.75 15.07 5.77 5.77 Total: -1.00 -33.20 382.75 -10.31 -43.51 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -7.75 Total: -0.50 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -4.47 Total: -2.00 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 1.07 Total: -56.39 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.09 Total: -7.29 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.20 -10.31 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663066284.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.105 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds