Wall clock time and date at job start Wed Apr 1 2020 04:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99716 * 2 1 4 4 H 1.48504 * 109.46892 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47418 * 300.00197 * 3 2 1 6 6 H 1.48500 * 109.46975 * 60.00472 * 3 2 1 7 7 C 1.38805 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.36946 * 120.00125 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64503 * 14.63353 * 9 7 2 11 11 C 1.54910 * 104.82705 * 155.90694 * 10 9 7 12 12 C 1.55151 * 101.58432 * 37.01169 * 11 10 9 13 13 C 1.47015 * 125.64962 * 194.67763 * 9 7 2 14 14 H 1.09003 * 109.88457 * 300.59814 * 13 9 7 15 15 C 1.52996 * 109.88280 * 61.60165 * 13 9 7 16 16 C 1.53000 * 109.47252 * 185.23848 * 15 13 9 17 17 C 1.53009 * 109.47023 * 174.95171 * 16 15 13 18 18 N 1.46506 * 109.46955 * 180.02562 * 17 16 15 19 19 C 1.34768 * 120.00072 * 179.97438 * 18 17 16 20 20 O 1.21527 * 119.99942 * 0.02562 * 19 18 17 21 21 C 1.48114 * 120.00374 * 180.02562 * 19 18 17 22 22 C 1.39822 * 119.37890 * 179.72903 * 21 19 18 23 23 C 1.36969 * 119.60903 * 179.76238 * 22 21 19 24 24 C 1.39806 * 118.25087 * 0.49623 * 23 22 21 25 25 N 1.34657 * 135.00379 * 179.74811 * 24 23 22 26 26 N 1.28672 * 109.16035 * 180.02562 * 25 24 23 27 27 N 1.28772 * 111.84585 * 359.97438 * 26 25 24 28 28 H 0.96998 * 125.85688 * 180.02562 * 27 26 25 29 29 C 1.37245 * 108.28399 * 0.02562 * 27 26 25 30 30 N 1.31956 * 134.71210 * 179.97438 * 29 27 26 31 31 H 0.96998 * 120.00044 * 359.97438 * 1 2 3 32 32 H 1.08998 * 110.36948 * 274.74374 * 10 9 7 33 33 H 1.09004 * 110.36922 * 37.07547 * 10 9 7 34 34 H 1.09007 * 111.00007 * 155.08208 * 11 10 9 35 35 H 1.08996 * 111.00809 * 278.89195 * 11 10 9 36 36 H 1.08999 * 110.72713 * 206.13107 * 12 11 10 37 37 H 1.09004 * 110.72288 * 82.85504 * 12 11 10 38 38 H 1.09004 * 109.46878 * 65.24230 * 15 13 9 39 39 H 1.09004 * 109.47464 * 305.24167 * 15 13 9 40 40 H 1.08998 * 109.47152 * 54.95716 * 16 15 13 41 41 H 1.09004 * 109.47229 * 294.94862 * 16 15 13 42 42 H 1.09004 * 109.46866 * 299.99913 * 17 16 15 43 43 H 1.08996 * 109.47153 * 60.00557 * 17 16 15 44 44 H 0.97004 * 119.99658 * 0.02562 * 18 17 16 45 45 H 1.07997 * 120.19191 * 359.97438 * 22 21 19 46 46 H 1.07999 * 120.87376 * 180.26492 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1079 -2.5525 -0.3027 11 6 -0.2477 -4.0214 -0.7746 12 6 0.7643 -4.7442 0.1531 13 6 1.8982 -3.7080 0.3016 14 1 2.7026 -3.9324 -0.3988 15 6 2.4357 -3.7265 1.7339 16 6 3.1447 -5.0568 1.9955 17 6 3.7904 -5.0266 3.3823 18 7 4.4698 -6.3003 3.6326 19 6 5.1138 -6.5027 4.7990 20 8 5.1306 -5.6289 5.6434 21 6 5.8011 -7.7901 5.0518 22 6 6.4701 -7.9840 6.2642 23 6 7.1031 -9.1746 6.5049 24 6 7.0637 -10.1577 5.5117 25 7 7.5543 -11.4055 5.3869 26 7 7.2172 -11.8790 4.2390 27 7 6.5214 -11.0359 3.5584 28 1 6.1625 -11.1821 2.6692 29 6 6.3747 -9.8950 4.3071 30 7 5.7753 -8.7341 4.1223 31 1 -0.4850 0.8400 0.0004 32 1 -0.7062 -2.3831 0.5925 33 1 -0.4092 -1.8689 -1.0964 34 1 -1.2604 -4.3898 -0.6103 35 1 0.0383 -4.1244 -1.8213 36 1 1.1341 -5.6561 -0.3157 37 1 0.3125 -4.9628 1.1207 38 1 1.6081 -3.6120 2.4341 39 1 3.1411 -2.9063 1.8679 40 1 3.9144 -5.2131 1.2398 41 1 2.4200 -5.8699 1.9498 42 1 4.5150 -4.2136 3.4280 43 1 3.0208 -4.8704 4.1382 44 1 4.4566 -6.9976 2.9583 45 1 6.4846 -7.2010 7.0078 46 1 7.6223 -9.3478 7.4359 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663066284.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:08 Heat of formation + Delta-G solvation = 84.519677 kcal Electronic energy + Delta-G solvation = -28506.094918 eV Core-core repulsion = 24432.402984 eV Total energy + Delta-G solvation = -4073.691935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.56567 -41.38122 -39.67021 -39.35414 -36.78286 -35.49194 -34.69509 -33.77679 -32.93384 -32.17697 -31.22165 -29.57156 -27.17506 -26.53454 -25.58228 -24.81614 -23.92234 -22.73262 -22.14294 -21.85510 -20.76514 -20.10423 -19.62974 -19.02297 -18.66553 -17.80369 -17.09572 -16.99516 -16.75904 -16.48488 -16.08257 -15.76464 -15.65461 -15.37308 -14.62004 -14.51901 -14.32218 -14.16326 -13.84275 -13.69129 -13.60110 -13.54389 -13.10775 -12.99526 -12.97946 -12.84573 -12.75983 -12.65064 -12.24619 -11.95043 -11.82364 -11.74621 -11.58701 -11.48956 -11.30173 -11.12983 -10.81521 -10.64642 -10.49669 -10.32036 -10.11809 -8.75763 -7.84277 -5.19733 -1.12720 -0.21157 0.84433 0.96565 1.45098 1.45991 1.55805 1.56368 1.90179 2.48745 2.50634 2.54246 2.98925 3.16417 3.34457 3.52435 3.64578 3.72291 3.95811 4.03092 4.17094 4.19294 4.22216 4.27766 4.36505 4.45407 4.65045 4.67995 4.71852 4.81461 4.83803 4.86934 5.00357 5.05959 5.12960 5.14700 5.24426 5.29561 5.37921 5.51328 5.52754 5.54847 5.69310 5.73205 5.81399 6.06736 6.29356 6.44191 6.89689 7.00382 7.14418 7.84270 8.51452 9.27535 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018095 B = 0.001860 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.000372 B =15049.538453 C =16056.825839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.619 5.619 10 C 0.175 3.825 11 C -0.138 4.138 12 C -0.111 4.111 13 C 0.151 3.849 14 H 0.035 0.965 15 C -0.112 4.112 16 C -0.110 4.110 17 C 0.122 3.878 18 N -0.694 5.694 19 C 0.568 3.432 20 O -0.555 6.555 21 C 0.142 3.858 22 C -0.118 4.118 23 C 0.012 3.988 24 C -0.035 4.035 25 N -0.260 5.260 26 N 0.008 4.992 27 N -0.382 5.382 28 H 0.474 0.526 29 C 0.205 3.795 30 N -0.446 5.446 31 H 0.245 0.755 32 H -0.008 1.008 33 H 0.028 0.972 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.039 0.961 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.420 0.580 45 H 0.180 0.820 46 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.371 -24.731 8.911 29.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.343 5.343 10 C 0.049 3.951 11 C -0.177 4.177 12 C -0.149 4.149 13 C 0.045 3.955 14 H 0.053 0.947 15 C -0.152 4.152 16 C -0.148 4.148 17 C -0.002 4.002 18 N -0.345 5.345 19 C 0.352 3.648 20 O -0.432 6.432 21 C -0.012 4.012 22 C -0.142 4.142 23 C -0.019 4.019 24 C -0.163 4.163 25 N -0.137 5.137 26 N 0.025 4.975 27 N -0.117 5.117 28 H 0.327 0.673 29 C -0.040 4.040 30 N -0.163 5.163 31 H 0.054 0.946 32 H 0.010 0.990 33 H 0.047 0.953 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.258 0.742 45 H 0.197 0.803 46 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 12.556 -25.194 8.716 29.468 hybrid contribution -0.261 1.960 -0.330 2.005 sum 12.295 -23.233 8.386 27.592 Atomic orbital electron populations 1.70159 1.06313 1.25032 1.58406 1.25679 0.96502 1.00970 1.02915 0.85125 0.78383 0.80015 0.76570 1.18987 1.22076 1.22176 1.19328 0.90706 0.83684 1.41971 0.90541 1.44864 1.06538 1.02613 1.80322 1.21200 0.84767 0.93081 0.96023 1.22885 0.99747 0.95794 0.99225 1.22585 0.95217 0.97322 0.99761 1.21227 0.95123 0.85353 0.93794 0.94708 1.21814 0.99042 0.96481 0.97853 1.21641 1.00291 0.98022 0.94828 1.21428 0.96128 0.84681 0.97950 1.45839 1.52180 1.18613 1.17858 1.17922 0.78897 0.85503 0.82470 1.90835 1.61861 1.44414 1.46106 1.21093 0.96896 0.91820 0.91355 1.21907 0.96028 0.98931 0.97356 1.20891 0.94525 0.88181 0.98277 1.21058 1.02439 0.95365 0.97447 1.75430 1.20746 1.08023 1.09475 1.78085 1.04397 1.15231 0.99807 1.44730 1.40134 1.08055 1.18789 0.67345 1.19882 1.01432 0.90622 0.92057 1.66173 1.18706 0.98838 1.32598 0.94567 0.99038 0.95329 0.90186 0.91864 0.88616 0.90990 0.93740 0.94194 0.90237 0.89306 0.92217 0.91767 0.74184 0.80269 0.79024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.71 10.58 21.65 0.23 -57.48 16 2 C -0.07 -3.87 5.47 84.86 0.46 -3.41 16 3 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 7 C -0.23 -12.58 9.71 84.03 0.82 -11.77 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 9 N -0.62 -30.90 3.13 -668.29 -2.09 -32.99 16 10 C 0.17 8.55 5.41 86.86 0.47 9.02 16 11 C -0.14 -4.84 7.08 31.98 0.23 -4.61 16 12 C -0.11 -3.30 5.71 31.78 0.18 -3.12 16 13 C 0.15 5.62 3.16 45.34 0.14 5.76 16 14 H 0.04 1.28 8.14 -2.39 -0.02 1.27 16 15 C -0.11 -3.69 4.71 30.59 0.14 -3.55 16 16 C -0.11 -2.40 5.10 30.60 0.16 -2.25 16 17 C 0.12 2.76 5.68 86.38 0.49 3.25 16 18 N -0.69 -13.19 5.54 -465.69 -2.58 -15.77 16 19 C 0.57 12.18 7.81 86.87 0.68 12.86 16 20 O -0.55 -15.45 16.29 -3.80 -0.06 -15.51 16 21 C 0.14 2.41 6.74 42.05 0.28 2.69 16 22 C -0.12 -1.51 9.55 22.36 0.21 -1.29 16 23 C 0.01 0.13 10.16 22.35 0.23 0.35 16 24 C -0.04 -0.55 7.38 39.83 0.29 -0.26 16 25 N -0.26 -4.62 12.43 -52.29 -0.65 -5.27 16 26 N 0.01 0.13 13.28 37.02 0.49 0.62 16 27 N -0.38 -4.20 7.06 -55.41 -0.39 -4.59 16 28 H 0.47 1.65 8.96 -219.84 -1.97 -0.32 16 29 C 0.21 3.08 8.56 134.31 1.15 4.23 16 30 N -0.45 -7.02 9.54 -182.09 -1.74 -8.76 16 31 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 32 H -0.01 -0.46 8.06 -2.39 -0.02 -0.48 16 33 H 0.03 1.59 6.93 -2.38 -0.02 1.58 16 34 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.07 2.02 7.76 -2.39 -0.02 2.00 16 38 H 0.04 1.59 8.02 -2.39 -0.02 1.57 16 39 H 0.04 1.51 7.84 -2.38 -0.02 1.49 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.09 1.60 7.65 -2.39 -0.02 1.58 16 42 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.42 6.18 7.78 -92.71 -0.72 5.46 16 45 H 0.18 1.86 7.61 -2.91 -0.02 1.83 16 46 H 0.19 0.75 8.06 -2.91 -0.02 0.73 16 Total: -1.00 -75.17 382.75 -0.48 -75.65 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -1.66 Total: 7.94 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 5.94 Total: 7.91 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -6.73 Total: -124.23 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.06 Total: -15.51 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -75.17 -0.48 -75.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663066284.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.168 kcal (2) G-P(sol) polarization free energy of solvation -75.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds