Wall clock time and date at job start Wed Apr 1 2020 04:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00004 * 2 1 4 4 H 1.48499 * 109.47301 * 270.00221 * 3 2 1 5 5 H 1.48495 * 109.47253 * 30.00721 * 3 2 1 6 6 H 1.48497 * 109.47249 * 150.00651 * 3 2 1 7 7 C 1.38816 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99832 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99696 * 359.97438 * 7 2 1 10 10 C 1.47745 * 125.82573 * 346.81766 * 9 7 2 11 11 C 1.54913 * 104.83758 * 204.24787 * 10 9 7 12 12 C 1.55149 * 101.58242 * 322.90202 * 11 10 9 13 13 C 1.47024 * 125.64307 * 166.80951 * 9 7 2 14 14 H 1.09000 * 109.88240 * 59.33263 * 13 9 7 15 15 C 1.53000 * 109.88554 * 298.31249 * 13 9 7 16 16 C 1.53000 * 109.46921 * 176.67942 * 15 13 9 17 17 C 1.52996 * 109.47090 * 185.08704 * 16 15 13 18 18 N 1.46504 * 109.47343 * 180.02562 * 17 16 15 19 19 C 1.34775 * 120.00002 * 180.02562 * 18 17 16 20 20 O 1.21561 * 120.00307 * 359.97438 * 19 18 17 21 21 C 1.47825 * 119.99957 * 179.97438 * 19 18 17 22 22 C 1.41578 * 120.37109 * 0.02562 * 21 19 18 23 23 C 1.34821 * 120.11159 * 180.02562 * 22 21 19 24 24 N 1.36054 * 120.82807 * 359.95306 * 23 22 21 25 25 N 1.40245 * 133.72774 * 179.97438 * 24 23 22 26 26 N 1.28971 * 107.02497 * 180.02562 * 25 24 23 27 27 N 1.28547 * 110.83721 * 0.02562 * 26 25 24 28 28 C 1.32610 * 110.18960 * 0.02562 * 27 26 25 29 29 C 1.38453 * 120.37575 * 180.02562 * 21 19 18 30 30 H 0.97004 * 119.99857 * 359.97438 * 1 2 3 31 31 H 1.08989 * 110.43745 * 85.36907 * 10 9 7 32 32 H 1.09002 * 110.28359 * 323.04898 * 10 9 7 33 33 H 1.09005 * 111.00335 * 204.82473 * 11 10 9 34 34 H 1.09000 * 111.03950 * 80.99502 * 11 10 9 35 35 H 1.09002 * 110.72233 * 277.13697 * 12 11 10 36 36 H 1.09000 * 110.71831 * 153.86971 * 12 11 10 37 37 H 1.09000 * 109.46829 * 56.68764 * 15 13 9 38 38 H 1.08993 * 109.47017 * 296.68294 * 15 13 9 39 39 H 1.09007 * 109.47238 * 65.08583 * 16 15 13 40 40 H 1.08999 * 109.47543 * 305.08903 * 16 15 13 41 41 H 1.08996 * 109.47599 * 60.00045 * 17 16 15 42 42 H 1.09008 * 109.46960 * 300.00182 * 17 16 15 43 43 H 0.97001 * 119.99871 * 359.97438 * 18 17 16 44 44 H 1.08002 * 119.94423 * 0.02562 * 22 21 19 45 45 H 1.07996 * 119.58367 * 179.97438 * 23 22 21 46 46 H 1.08003 * 120.51392 * 359.97438 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1168 -2.5538 0.2732 11 6 -0.2622 -4.0163 0.7628 12 6 0.7705 -4.7490 -0.1337 13 6 1.9044 -3.7116 -0.2737 14 1 2.6943 -3.9265 0.4461 15 6 2.4711 -3.7487 -1.6944 16 6 3.1439 -5.1007 -1.9400 17 6 3.8200 -5.0920 -3.3124 18 7 4.4637 -6.3868 -3.5479 19 6 5.1260 -6.6105 -4.7002 20 8 5.1888 -5.7381 -5.5444 21 6 5.7760 -7.9168 -4.9376 22 6 5.7073 -8.9386 -3.9600 23 6 6.3025 -10.1279 -4.1817 24 7 6.9741 -10.3661 -5.3407 25 7 7.6755 -11.4708 -5.8452 26 7 8.1173 -11.1377 -7.0102 27 7 7.7721 -9.9347 -7.3033 28 6 7.0662 -9.4068 -6.3126 29 6 6.4588 -8.1548 -6.1182 30 1 -0.4850 0.8401 0.0004 31 1 -0.6971 -2.3988 -0.6363 32 1 -0.4361 -1.8599 1.0508 33 1 -1.2703 -4.3900 0.5832 34 1 0.0029 -4.1044 1.8164 35 1 0.3392 -4.9826 -1.1071 36 1 1.1331 -5.6531 0.3555 37 1 3.2043 -2.9510 -1.8140 38 1 1.6624 -3.6095 -2.4118 39 1 2.3936 -5.8908 -1.9095 40 1 3.8918 -5.2800 -1.1676 41 1 4.5703 -4.3020 -3.3430 42 1 3.0720 -4.9127 -4.0848 43 1 4.4139 -7.0829 -2.8741 44 1 5.1772 -8.7652 -3.0352 45 1 6.2451 -10.9012 -3.4301 46 1 6.5237 -7.3899 -6.8780 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663092671.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:26 Heat of formation + Delta-G solvation = 132.152201 kcal Electronic energy + Delta-G solvation = -28389.779392 eV Core-core repulsion = 24318.152959 eV Total energy + Delta-G solvation = -4071.626433 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.95109 -40.61842 -38.78351 -37.90570 -35.87540 -34.58691 -33.38352 -32.66754 -32.09427 -31.12616 -29.47915 -28.40219 -26.13943 -25.36700 -24.75260 -23.88198 -23.42751 -21.74825 -21.48871 -20.19659 -19.35424 -19.14854 -18.61064 -17.63302 -17.44280 -16.77178 -16.25204 -15.97991 -15.71323 -15.32832 -15.13599 -14.65292 -14.43765 -14.12747 -14.00587 -13.83055 -13.62409 -13.05550 -13.00400 -12.62205 -12.47126 -12.14954 -12.10750 -11.98207 -11.80737 -11.61974 -11.56017 -11.10697 -10.88743 -10.83736 -10.81301 -10.66640 -10.54158 -10.11766 -10.05137 -9.83223 -9.67113 -9.65543 -9.48962 -9.26707 -8.61334 -6.81381 -5.76447 -3.11552 -0.56953 -0.23785 1.07631 1.48761 1.95402 2.40807 2.79246 3.10570 3.37310 3.42740 3.43077 3.44280 3.63457 3.88713 4.19654 4.25478 4.46176 4.62563 4.78936 4.83841 4.97205 5.02176 5.04240 5.25020 5.26744 5.39707 5.50153 5.53518 5.63236 5.64164 5.75396 5.79210 5.88965 5.98004 6.07702 6.21908 6.27501 6.34581 6.50742 6.62808 6.66773 6.87931 6.96408 7.11117 7.52350 7.59332 7.63449 7.77712 7.78114 8.26646 9.17659 9.79658 10.48507 11.35595 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.021084 B = 0.001741 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.687899 B =16078.486782 C =17033.385924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.908 3.092 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.074 0.926 9 N -0.596 5.596 10 C 0.171 3.829 11 C -0.151 4.151 12 C -0.124 4.124 13 C 0.162 3.838 14 H 0.030 0.970 15 C -0.123 4.123 16 C -0.128 4.128 17 C 0.116 3.884 18 N -0.714 5.714 19 C 0.556 3.444 20 O -0.517 6.517 21 C -0.068 4.068 22 C -0.115 4.115 23 C 0.110 3.890 24 N -0.296 5.296 25 N -0.106 5.106 26 N -0.006 5.006 27 N -0.311 5.311 28 C 0.238 3.762 29 C -0.022 4.022 30 H 0.252 0.748 31 H 0.023 0.977 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.400 0.600 44 H 0.173 0.827 45 H 0.189 0.811 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.408 -21.050 -4.651 23.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.092 0.908 9 N -0.321 5.321 10 C 0.046 3.954 11 C -0.189 4.189 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.163 4.163 16 C -0.167 4.167 17 C -0.007 4.007 18 N -0.366 5.366 19 C 0.340 3.660 20 O -0.393 6.393 21 C -0.080 4.080 22 C -0.139 4.139 23 C -0.017 4.017 24 N -0.076 5.076 25 N -0.089 5.089 26 N 0.001 4.999 27 N -0.171 5.171 28 C -0.017 4.017 29 C -0.046 4.046 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.235 0.765 44 H 0.190 0.810 45 H 0.206 0.794 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 9.249 -21.336 -6.003 24.017 hybrid contribution -0.098 1.024 0.885 1.357 sum 9.151 -20.312 -5.118 22.858 Atomic orbital electron populations 1.69932 1.04971 1.25114 1.56475 1.24880 0.95666 0.97757 1.01964 0.86177 0.78684 0.83618 0.77637 1.21520 1.21719 1.20680 1.18951 0.90293 0.82327 1.43915 0.90770 1.44614 1.05353 1.00986 1.81106 1.21488 0.85008 0.90213 0.98665 1.23010 0.97416 0.99779 0.98720 1.22591 0.97145 0.97084 0.99392 1.20915 0.93810 0.87040 0.92769 0.95204 1.22042 1.00121 0.94141 0.99995 1.21859 0.99753 1.00509 0.94541 1.21668 0.97125 0.83316 0.98544 1.46001 1.54142 1.17968 1.18481 1.17762 0.79340 0.86100 0.82782 1.90879 1.59485 1.44799 1.44119 1.20395 0.98109 0.95395 0.94134 1.21219 1.00631 0.91040 1.01024 1.21597 0.93582 0.99576 0.86971 1.49072 1.32839 1.11554 1.14179 1.82839 1.14254 1.04272 1.07581 1.77924 1.11220 1.05626 1.05155 1.75285 1.17195 1.02634 1.22015 1.22776 0.98745 0.93077 0.87062 1.20824 0.93051 0.92507 0.98239 0.93718 0.95912 0.90999 0.92562 0.92487 0.92053 0.92673 0.91594 0.92094 0.91538 0.91583 0.90725 0.90808 0.76450 0.80980 0.79353 0.80043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.24 10.54 55.49 0.59 -25.65 16 2 C -0.01 -0.16 5.47 -17.43 -0.10 -0.26 16 3 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.23 -5.98 9.75 -15.06 -0.15 -6.13 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.60 -14.20 3.14 -162.32 -0.51 -14.71 16 10 C 0.17 3.96 5.46 -2.35 -0.01 3.95 16 11 C -0.15 -2.65 7.08 -24.59 -0.17 -2.82 16 12 C -0.12 -1.90 5.61 -24.90 -0.14 -2.04 16 13 C 0.16 2.95 3.18 -66.95 -0.21 2.74 16 14 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 15 C -0.12 -1.91 4.69 -26.73 -0.13 -2.04 16 16 C -0.13 -1.30 5.07 -26.73 -0.14 -1.43 16 17 C 0.12 1.14 5.67 -4.04 -0.02 1.11 16 18 N -0.71 -4.94 5.51 -61.25 -0.34 -5.28 16 19 C 0.56 4.77 7.78 -12.34 -0.10 4.67 16 20 O -0.52 -6.66 16.37 5.31 0.09 -6.57 16 21 C -0.07 -0.41 5.90 -104.62 -0.62 -1.03 16 22 C -0.12 -0.31 9.48 -39.52 -0.37 -0.68 16 23 C 0.11 0.39 11.19 -16.89 -0.19 0.20 16 24 N -0.30 -2.35 3.94 -12.43 -0.05 -2.40 16 25 N -0.11 -1.12 13.98 60.35 0.84 -0.27 16 26 N -0.01 -0.08 13.35 60.35 0.81 0.73 16 27 N -0.31 -3.64 12.27 31.03 0.38 -3.26 16 28 C 0.24 2.18 8.02 -156.36 -1.25 0.92 16 29 C -0.02 -0.16 9.70 -38.65 -0.37 -0.54 16 30 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.02 0.57 8.10 -51.94 -0.42 0.15 16 32 H 0.07 1.88 6.83 -51.93 -0.35 1.52 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.89 7.79 -51.93 -0.40 0.49 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.15 7.90 -51.93 -0.41 0.74 16 38 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 39 H 0.07 0.58 7.57 -51.93 -0.39 0.19 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 43 H 0.40 1.33 6.54 -40.82 -0.27 1.07 16 44 H 0.17 -0.18 6.46 -52.49 -0.34 -0.52 16 45 H 0.19 -0.01 8.06 -52.49 -0.42 -0.43 16 46 H 0.18 1.29 7.67 -52.48 -0.40 0.89 16 LS Contribution 382.17 15.07 5.76 5.76 Total: -1.00 -34.56 382.17 -7.77 -42.33 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -6.34 Total: -3.80 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -3.97 Total: -3.38 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 1.72 Total: -50.84 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: 0.09 Total: -6.57 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.56 -7.77 -42.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663092671.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.477 kcal (2) G-P(sol) polarization free energy of solvation -34.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds