Wall clock time and date at job start Wed Apr 1 2020 04:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00004 * 2 1 4 4 H 1.48499 * 109.47301 * 270.00221 * 3 2 1 5 5 H 1.48495 * 109.47253 * 30.00721 * 3 2 1 6 6 H 1.48497 * 109.47249 * 150.00651 * 3 2 1 7 7 C 1.38816 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99832 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99696 * 359.97438 * 7 2 1 10 10 C 1.47745 * 125.82573 * 346.81766 * 9 7 2 11 11 C 1.54913 * 104.83758 * 204.24787 * 10 9 7 12 12 C 1.55149 * 101.58242 * 322.90202 * 11 10 9 13 13 C 1.47024 * 125.64307 * 166.80951 * 9 7 2 14 14 H 1.09000 * 109.88240 * 59.33263 * 13 9 7 15 15 C 1.53000 * 109.88554 * 298.31249 * 13 9 7 16 16 C 1.53000 * 109.46921 * 176.67942 * 15 13 9 17 17 C 1.52996 * 109.47090 * 185.08704 * 16 15 13 18 18 N 1.46504 * 109.47343 * 180.02562 * 17 16 15 19 19 C 1.34775 * 120.00002 * 180.02562 * 18 17 16 20 20 O 1.21561 * 120.00307 * 359.97438 * 19 18 17 21 21 C 1.47825 * 119.99957 * 179.97438 * 19 18 17 22 22 C 1.41578 * 120.37109 * 0.02562 * 21 19 18 23 23 C 1.34821 * 120.11159 * 180.02562 * 22 21 19 24 24 N 1.36054 * 120.82807 * 359.95306 * 23 22 21 25 25 N 1.40245 * 133.72774 * 179.97438 * 24 23 22 26 26 N 1.28971 * 107.02497 * 180.02562 * 25 24 23 27 27 N 1.28547 * 110.83721 * 0.02562 * 26 25 24 28 28 C 1.32610 * 110.18960 * 0.02562 * 27 26 25 29 29 C 1.38453 * 120.37575 * 180.02562 * 21 19 18 30 30 H 0.97004 * 119.99857 * 359.97438 * 1 2 3 31 31 H 1.08989 * 110.43745 * 85.36907 * 10 9 7 32 32 H 1.09002 * 110.28359 * 323.04898 * 10 9 7 33 33 H 1.09005 * 111.00335 * 204.82473 * 11 10 9 34 34 H 1.09000 * 111.03950 * 80.99502 * 11 10 9 35 35 H 1.09002 * 110.72233 * 277.13697 * 12 11 10 36 36 H 1.09000 * 110.71831 * 153.86971 * 12 11 10 37 37 H 1.09000 * 109.46829 * 56.68764 * 15 13 9 38 38 H 1.08993 * 109.47017 * 296.68294 * 15 13 9 39 39 H 1.09007 * 109.47238 * 65.08583 * 16 15 13 40 40 H 1.08999 * 109.47543 * 305.08903 * 16 15 13 41 41 H 1.08996 * 109.47599 * 60.00045 * 17 16 15 42 42 H 1.09008 * 109.46960 * 300.00182 * 17 16 15 43 43 H 0.97001 * 119.99871 * 359.97438 * 18 17 16 44 44 H 1.08002 * 119.94423 * 0.02562 * 22 21 19 45 45 H 1.07996 * 119.58367 * 179.97438 * 23 22 21 46 46 H 1.08003 * 120.51392 * 359.97438 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1168 -2.5538 0.2732 11 6 -0.2622 -4.0163 0.7628 12 6 0.7705 -4.7490 -0.1337 13 6 1.9044 -3.7116 -0.2737 14 1 2.6943 -3.9265 0.4461 15 6 2.4711 -3.7487 -1.6944 16 6 3.1439 -5.1007 -1.9400 17 6 3.8200 -5.0920 -3.3124 18 7 4.4637 -6.3868 -3.5479 19 6 5.1260 -6.6105 -4.7002 20 8 5.1888 -5.7381 -5.5444 21 6 5.7760 -7.9168 -4.9376 22 6 5.7073 -8.9386 -3.9600 23 6 6.3025 -10.1279 -4.1817 24 7 6.9741 -10.3661 -5.3407 25 7 7.6755 -11.4708 -5.8452 26 7 8.1173 -11.1377 -7.0102 27 7 7.7721 -9.9347 -7.3033 28 6 7.0662 -9.4068 -6.3126 29 6 6.4588 -8.1548 -6.1182 30 1 -0.4850 0.8401 0.0004 31 1 -0.6971 -2.3988 -0.6363 32 1 -0.4361 -1.8599 1.0508 33 1 -1.2703 -4.3900 0.5832 34 1 0.0029 -4.1044 1.8164 35 1 0.3392 -4.9826 -1.1071 36 1 1.1331 -5.6531 0.3555 37 1 3.2043 -2.9510 -1.8140 38 1 1.6624 -3.6095 -2.4118 39 1 2.3936 -5.8908 -1.9095 40 1 3.8918 -5.2800 -1.1676 41 1 4.5703 -4.3020 -3.3430 42 1 3.0720 -4.9127 -4.0848 43 1 4.4139 -7.0829 -2.8741 44 1 5.1772 -8.7652 -3.0352 45 1 6.2451 -10.9012 -3.4301 46 1 6.5237 -7.3899 -6.8780 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663092671.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:25 Heat of formation + Delta-G solvation = 108.067921 kcal Electronic energy + Delta-G solvation = -28390.823765 eV Core-core repulsion = 24318.152959 eV Total energy + Delta-G solvation = -4072.670806 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.58566 -41.29824 -39.51502 -39.26251 -36.79073 -35.20871 -34.71136 -33.90861 -33.06521 -31.67032 -31.20506 -29.62236 -27.04952 -26.44018 -25.93284 -25.08109 -24.00002 -22.70177 -22.24744 -21.82382 -20.72101 -19.86094 -19.19514 -18.68502 -18.08892 -18.07922 -17.02454 -16.88303 -16.72662 -16.27219 -16.12321 -15.80232 -15.62594 -15.46496 -14.92756 -14.47353 -14.35710 -14.18456 -13.86324 -13.72180 -13.64692 -13.52508 -13.12632 -13.09167 -12.94334 -12.76213 -12.72147 -12.63466 -12.30009 -12.19027 -11.97566 -11.76351 -11.65713 -11.50485 -11.34802 -11.32832 -11.23045 -11.06143 -10.63211 -10.20922 -9.80836 -8.74357 -7.82151 -5.16776 -1.10700 -0.75064 0.58145 0.88487 1.32326 1.46182 1.47361 1.55232 1.74065 2.21625 2.51783 2.55020 2.86618 3.22398 3.36657 3.43896 3.70758 3.75224 3.88640 4.01540 4.06821 4.08527 4.22804 4.31321 4.32894 4.41266 4.48990 4.52513 4.66325 4.69086 4.82662 4.85627 4.89263 4.93137 5.05743 5.10850 5.19839 5.22056 5.28735 5.32473 5.43842 5.54811 5.60308 5.72618 5.78690 5.84498 6.31168 6.39616 7.04441 7.08084 7.15874 7.86746 8.53618 9.29119 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.021084 B = 0.001741 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.687899 B =16078.486782 C =17033.385924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.069 4.069 3 Si 0.968 3.032 4 H -0.290 1.290 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.620 5.620 10 C 0.172 3.828 11 C -0.139 4.139 12 C -0.110 4.110 13 C 0.150 3.850 14 H 0.038 0.962 15 C -0.115 4.115 16 C -0.109 4.109 17 C 0.122 3.878 18 N -0.693 5.693 19 C 0.557 3.443 20 O -0.566 6.566 21 C -0.054 4.054 22 C -0.091 4.091 23 C 0.113 3.887 24 N -0.293 5.293 25 N -0.122 5.122 26 N -0.032 5.032 27 N -0.346 5.346 28 C 0.226 3.774 29 C -0.038 4.038 30 H 0.244 0.756 31 H -0.011 1.011 32 H 0.029 0.971 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.036 0.964 38 H 0.040 0.960 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.423 0.577 44 H 0.224 0.776 45 H 0.234 0.766 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.679 -24.049 -2.366 25.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.262 4.262 3 Si 0.797 3.203 4 H -0.217 1.217 5 H -0.224 1.224 6 H -0.193 1.193 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.345 5.345 10 C 0.047 3.953 11 C -0.177 4.177 12 C -0.147 4.147 13 C 0.044 3.956 14 H 0.055 0.945 15 C -0.155 4.155 16 C -0.147 4.147 17 C -0.002 4.002 18 N -0.346 5.346 19 C 0.343 3.657 20 O -0.446 6.446 21 C -0.065 4.065 22 C -0.114 4.114 23 C -0.014 4.014 24 N -0.073 5.073 25 N -0.105 5.105 26 N -0.025 5.025 27 N -0.208 5.208 28 C -0.026 4.026 29 C -0.062 4.062 30 H 0.053 0.947 31 H 0.007 0.993 32 H 0.048 0.952 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.119 0.881 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.263 0.737 44 H 0.240 0.760 45 H 0.250 0.750 46 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 9.547 -24.407 -3.685 26.465 hybrid contribution -0.253 2.006 0.303 2.044 sum 9.294 -22.401 -3.382 24.487 Atomic orbital electron populations 1.70148 1.06275 1.24966 1.58604 1.25634 0.96462 1.00883 1.03200 0.85224 0.77881 0.79893 0.77276 1.21726 1.22432 1.19283 1.19297 0.90722 0.83729 1.41711 0.90405 1.44939 1.05727 1.02417 1.81394 1.21285 0.84645 0.93398 0.96015 1.22879 0.99781 0.95679 0.99384 1.22596 0.94885 0.97327 0.99911 1.21254 0.95140 0.85148 0.94010 0.94460 1.21833 0.99025 0.96823 0.97836 1.21660 1.00584 0.97581 0.94917 1.21378 0.96406 0.84211 0.98165 1.45689 1.52908 1.17499 1.18497 1.18043 0.78900 0.86338 0.82426 1.90875 1.61233 1.46602 1.45844 1.20264 0.96969 0.94961 0.94349 1.21745 0.99222 0.89073 1.01336 1.22578 0.91766 1.00980 0.86033 1.49235 1.32549 1.10482 1.15043 1.82692 1.15158 1.05254 1.07409 1.77868 1.12369 1.06136 1.06135 1.75148 1.18822 1.02993 1.23835 1.22753 0.99034 0.93650 0.87183 1.20761 0.94277 0.91944 0.99220 0.94671 0.99256 0.95236 0.90284 0.91896 0.90894 0.88077 0.94530 0.94148 0.88575 0.89385 0.92652 0.92301 0.73720 0.75955 0.74969 0.80924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.77 10.54 21.65 0.23 -56.54 16 2 C -0.07 -3.87 5.47 84.86 0.46 -3.40 16 3 Si 0.97 45.38 29.55 68.60 2.03 47.40 16 4 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.22 -12.07 9.75 84.04 0.82 -11.25 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 9 N -0.62 -29.62 3.14 -667.45 -2.09 -31.72 16 10 C 0.17 8.10 5.46 86.79 0.47 8.57 16 11 C -0.14 -4.52 7.08 31.98 0.23 -4.30 16 12 C -0.11 -2.85 5.61 31.78 0.18 -2.67 16 13 C 0.15 5.09 3.18 45.34 0.14 5.23 16 14 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 15 C -0.11 -3.38 4.69 30.59 0.14 -3.23 16 16 C -0.11 -1.72 5.07 30.59 0.16 -1.56 16 17 C 0.12 2.06 5.67 86.38 0.49 2.55 16 18 N -0.69 -6.60 5.51 -465.98 -2.57 -9.16 16 19 C 0.56 8.13 7.78 86.78 0.68 8.81 16 20 O -0.57 -14.34 16.37 -3.91 -0.06 -14.41 16 21 C -0.05 -0.48 5.90 -19.87 -0.12 -0.60 16 22 C -0.09 0.03 9.48 22.31 0.21 0.24 16 23 C 0.11 0.25 11.19 83.25 0.93 1.18 16 24 N -0.29 -4.07 3.94 -193.24 -0.76 -4.83 16 25 N -0.12 -2.48 13.98 37.02 0.52 -1.96 16 26 N -0.03 -0.81 13.35 37.02 0.49 -0.31 16 27 N -0.35 -8.46 12.27 -55.73 -0.68 -9.14 16 28 C 0.23 4.07 8.02 134.05 1.08 5.15 16 29 C -0.04 -0.53 9.70 22.87 0.22 -0.31 16 30 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 31 H -0.01 -0.56 8.10 -2.39 -0.02 -0.58 16 32 H 0.03 1.61 6.83 -2.39 -0.02 1.59 16 33 H 0.08 2.22 8.14 -2.38 -0.02 2.21 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 1.76 7.79 -2.39 -0.02 1.74 16 36 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.04 1.27 7.90 -2.39 -0.02 1.25 16 38 H 0.04 1.33 8.07 -2.39 -0.02 1.31 16 39 H 0.10 1.04 7.57 -2.38 -0.02 1.02 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.42 -0.03 6.54 -92.71 -0.61 -0.64 16 44 H 0.22 -2.34 6.46 -2.91 -0.02 -2.36 16 45 H 0.23 -1.55 8.06 -2.91 -0.02 -1.57 16 46 H 0.17 2.66 7.67 -2.91 -0.02 2.64 16 Total: -1.00 -84.73 382.17 3.60 -81.13 By element: Atomic # 1 Polarization: -5.28 SS G_CDS: 0.41 Total: -4.87 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 6.09 Total: 4.41 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -4.87 Total: -113.67 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.06 Total: -14.41 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -84.73 3.60 -81.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663092671.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.194 kcal (2) G-P(sol) polarization free energy of solvation -84.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds