Wall clock time and date at job start Wed Apr 1 2020 04:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99968 * 2 1 4 4 H 1.48504 * 109.47076 * 273.98645 * 3 2 1 5 5 H 1.48501 * 109.47198 * 33.99047 * 3 2 1 6 6 H 1.48507 * 109.47347 * 153.99279 * 3 2 1 7 7 C 1.38815 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99761 * 352.04973 * 7 2 1 9 9 N 1.36936 * 120.00370 * 172.04532 * 7 2 1 10 10 C 1.47429 * 125.64504 * 307.09493 * 9 7 2 11 11 C 1.54912 * 104.82806 * 155.90501 * 10 9 7 12 12 C 1.55149 * 101.58398 * 37.00839 * 11 10 9 13 13 C 1.47016 * 125.64808 * 127.12977 * 9 7 2 14 14 H 1.08999 * 109.88481 * 300.59776 * 13 9 7 15 15 C 1.52997 * 109.88302 * 61.61430 * 13 9 7 16 16 C 1.52999 * 109.47025 * 289.46194 * 15 13 9 17 17 C 1.53000 * 109.47594 * 186.09125 * 16 15 13 18 18 N 1.46492 * 109.47284 * 180.02562 * 17 16 15 19 19 C 1.34780 * 120.00186 * 180.02562 * 18 17 16 20 20 O 1.21556 * 119.99441 * 359.97438 * 19 18 17 21 21 C 1.47820 * 120.00528 * 180.02562 * 19 18 17 22 22 C 1.41586 * 120.37100 * 359.97438 * 21 19 18 23 23 C 1.34815 * 120.11200 * 179.97438 * 22 21 19 24 24 N 1.36057 * 120.83126 * 0.04623 * 23 22 21 25 25 N 1.40248 * 133.73129 * 179.97438 * 24 23 22 26 26 N 1.28978 * 107.01882 * 180.02562 * 25 24 23 27 27 N 1.28543 * 110.84148 * 359.97438 * 26 25 24 28 28 C 1.32619 * 110.18690 * 0.02562 * 27 26 25 29 29 C 1.38447 * 120.37860 * 179.72432 * 21 19 18 30 30 H 0.96996 * 119.99936 * 359.97438 * 1 2 3 31 31 H 1.08999 * 110.36686 * 274.73839 * 10 9 7 32 32 H 1.08996 * 110.36975 * 37.06391 * 10 9 7 33 33 H 1.09000 * 111.00180 * 155.08595 * 11 10 9 34 34 H 1.09003 * 111.00170 * 278.89291 * 11 10 9 35 35 H 1.09001 * 110.72007 * 206.13694 * 12 11 10 36 36 H 1.08999 * 110.72076 * 82.86225 * 12 11 10 37 37 H 1.09004 * 109.47233 * 169.46308 * 15 13 9 38 38 H 1.09005 * 109.47329 * 49.46108 * 15 13 9 39 39 H 1.09009 * 109.47159 * 66.09040 * 16 15 13 40 40 H 1.09002 * 109.47104 * 306.09528 * 16 15 13 41 41 H 1.09000 * 109.46818 * 300.00669 * 17 16 15 42 42 H 1.08999 * 109.46646 * 60.00221 * 17 16 15 43 43 H 0.97000 * 120.00231 * 0.02562 * 18 17 16 44 44 H 1.08002 * 119.93996 * 0.02562 * 22 21 19 45 45 H 1.08006 * 119.58150 * 180.02562 * 23 22 21 46 46 H 1.08006 * 120.51933 * 359.97438 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4133 2.0951 -1.3967 5 1 1.4923 2.6268 0.7827 6 1 3.5874 1.4173 0.6139 7 6 2.0103 -1.2021 0.0005 8 1 1.4781 -2.1329 0.1303 9 7 3.3698 -1.2080 -0.1636 10 6 4.1052 -0.5573 -1.2633 11 6 5.5262 -0.3100 -0.6981 12 6 5.7455 -1.5828 0.1615 13 6 4.3375 -1.8646 0.7273 14 1 4.2514 -1.4559 1.7340 15 6 4.0799 -3.3725 0.7543 16 6 2.7761 -3.6538 1.5038 17 6 2.5952 -5.1647 1.6635 18 7 1.3465 -5.4339 2.3805 19 6 0.9777 -6.7044 2.6381 20 8 1.6811 -7.6269 2.2749 21 6 -0.2826 -6.9762 3.3611 22 6 -1.1081 -5.9078 3.7873 23 6 -2.2567 -6.1617 4.4459 24 7 -2.6401 -7.4397 4.7119 25 7 -3.7482 -8.0045 5.3602 26 7 -3.5950 -9.2846 5.3235 27 7 -2.5047 -9.5976 4.7188 28 6 -1.8725 -8.5025 4.3190 29 6 -0.6717 -8.2785 3.6248 30 1 -0.4850 0.8400 0.0004 31 1 4.1513 -1.2158 -2.1306 32 1 3.6325 0.3883 -1.5285 33 1 6.2609 -0.2494 -1.5010 34 1 5.5503 0.5881 -0.0808 35 1 6.4527 -1.3868 0.9674 36 1 6.0854 -2.4127 -0.4580 37 1 4.9053 -3.8731 1.2606 38 1 3.9999 -3.7459 -0.2667 39 1 1.9374 -3.2451 0.9400 40 1 2.8145 -3.1864 2.4878 41 1 2.5568 -5.6320 0.6795 42 1 3.4338 -5.5733 2.2273 43 1 0.7850 -4.6978 2.6700 44 1 -0.8175 -4.8877 3.5836 45 1 -2.8802 -5.3402 4.7667 46 1 -0.0598 -9.1091 3.3052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663092672.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:31 Heat of formation + Delta-G solvation = 134.910942 kcal Electronic energy + Delta-G solvation = -29018.002408 eV Core-core repulsion = 24946.495603 eV Total energy + Delta-G solvation = -4071.506805 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.75578 -40.39557 -38.58814 -38.14256 -35.65553 -34.38385 -33.11301 -32.71026 -32.19715 -30.91745 -30.00790 -28.73791 -26.11753 -25.15480 -24.71252 -23.84193 -23.22429 -21.52064 -21.28067 -20.39127 -19.41668 -18.99276 -18.37640 -17.47961 -17.24836 -16.92750 -16.27669 -16.00500 -15.60447 -15.50086 -15.03051 -14.57346 -14.47062 -13.97583 -13.77810 -13.56553 -13.37847 -12.99925 -12.86263 -12.66825 -12.51038 -12.41263 -12.19148 -12.11267 -11.90411 -11.43819 -11.42432 -11.26774 -11.05524 -10.93177 -10.69752 -10.60133 -10.48334 -10.38547 -10.03495 -9.94359 -9.92505 -9.50184 -9.21365 -9.04607 -8.63480 -6.58132 -6.09088 -3.78317 -0.36576 -0.02284 1.27824 1.68946 2.15044 2.64990 3.00553 3.23781 3.33122 3.35920 3.43345 3.63954 3.87842 4.12863 4.40529 4.40624 4.51800 4.85116 4.94853 5.00494 5.06980 5.12844 5.17804 5.27300 5.37117 5.38792 5.46254 5.50362 5.53722 5.69075 5.85476 5.90572 5.91665 6.06035 6.10343 6.18519 6.24457 6.27854 6.42498 6.49581 6.58056 6.67592 6.83577 6.87555 7.01139 7.23936 7.85815 7.95887 7.98065 8.34812 8.75046 9.51732 10.23551 10.99461 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.016267 B = 0.002233 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.889131 B =12534.211177 C =13988.436050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.044 3.956 3 Si 0.891 3.109 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.263 1.263 7 C -0.256 4.256 8 H 0.086 0.914 9 N -0.602 5.602 10 C 0.119 3.881 11 C -0.139 4.139 12 C -0.126 4.126 13 C 0.155 3.845 14 H 0.040 0.960 15 C -0.113 4.113 16 C -0.143 4.143 17 C 0.118 3.882 18 N -0.709 5.709 19 C 0.556 3.444 20 O -0.526 6.526 21 C -0.065 4.065 22 C -0.113 4.113 23 C 0.110 3.890 24 N -0.294 5.294 25 N -0.108 5.108 26 N -0.009 5.009 27 N -0.314 5.314 28 C 0.237 3.763 29 C -0.026 4.026 30 H 0.265 0.735 31 H 0.027 0.973 32 H 0.038 0.962 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.405 0.595 44 H 0.177 0.823 45 H 0.191 0.809 46 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.918 -8.195 6.932 11.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.158 4.158 3 Si 0.721 3.279 4 H -0.214 1.214 5 H -0.230 1.230 6 H -0.187 1.187 7 C -0.384 4.384 8 H 0.102 0.898 9 N -0.329 5.329 10 C -0.006 4.006 11 C -0.178 4.178 12 C -0.164 4.164 13 C 0.049 3.951 14 H 0.058 0.942 15 C -0.153 4.153 16 C -0.180 4.180 17 C -0.004 4.004 18 N -0.360 5.360 19 C 0.341 3.659 20 O -0.403 6.403 21 C -0.077 4.077 22 C -0.136 4.136 23 C -0.017 4.017 24 N -0.075 5.075 25 N -0.091 5.091 26 N -0.002 5.002 27 N -0.175 5.175 28 C -0.017 4.017 29 C -0.050 4.050 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.241 0.759 44 H 0.194 0.806 45 H 0.208 0.792 46 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.954 -9.594 7.403 12.275 hybrid contribution 0.568 2.152 -0.277 2.243 sum 2.522 -7.441 7.127 10.608 Atomic orbital electron populations 1.69755 1.06038 1.27047 1.51604 1.25868 0.95134 0.98628 0.96149 0.86603 0.80482 0.83435 0.77416 1.21403 1.23013 1.18703 1.18566 0.79131 0.92796 1.47928 0.89761 1.44568 1.02114 1.63277 1.22953 1.21859 0.90488 0.96149 0.92061 1.22796 0.97890 0.97934 0.99131 1.22577 0.97184 0.97632 0.99025 1.21106 0.88313 0.91278 0.94386 0.94205 1.21853 0.95380 0.98211 0.99827 1.22222 1.02091 0.91667 1.02050 1.21655 0.84149 0.98314 0.96300 1.46006 1.25381 1.06899 1.57685 1.17749 0.84468 0.83772 0.79910 1.90834 1.53554 1.43848 1.52045 1.20422 0.96102 0.92954 0.98246 1.21321 0.92849 1.01354 0.98125 1.21639 0.97485 0.84067 0.98517 1.49054 1.15965 1.08166 1.34286 1.82833 1.03636 1.02929 1.19689 1.77895 1.09087 1.05218 1.07986 1.75255 1.03258 1.21395 1.17595 1.22762 0.95577 0.84386 0.98976 1.20777 0.91274 0.98523 0.94451 0.92557 0.95492 0.94354 0.91985 0.91838 0.92075 0.91714 0.93353 0.92116 0.87226 0.91987 0.91299 0.91747 0.75901 0.80632 0.79237 0.80174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.95 13.97 55.49 0.78 -24.18 16 2 C 0.04 1.16 5.50 -17.43 -0.10 1.06 16 3 Si 0.89 20.91 25.12 -169.99 -4.27 16.64 16 4 H -0.29 -6.76 7.00 56.52 0.40 -6.36 16 5 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.26 -5.98 6.44 56.52 0.36 -5.61 16 7 C -0.26 -6.24 9.35 -15.06 -0.14 -6.38 16 8 H 0.09 2.12 5.18 -52.49 -0.27 1.85 16 9 N -0.60 -12.71 2.38 -162.57 -0.39 -13.10 16 10 C 0.12 2.34 6.19 -2.53 -0.02 2.32 16 11 C -0.14 -2.24 7.08 -24.59 -0.17 -2.41 16 12 C -0.13 -1.85 6.47 -24.90 -0.16 -2.01 16 13 C 0.16 2.68 3.21 -66.95 -0.22 2.46 16 14 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 15 C -0.11 -1.66 4.69 -26.73 -0.13 -1.78 16 16 C -0.14 -2.01 4.86 -26.73 -0.13 -2.14 16 17 C 0.12 1.43 5.67 -4.05 -0.02 1.41 16 18 N -0.71 -7.35 5.51 -61.26 -0.34 -7.68 16 19 C 0.56 6.16 7.78 -12.34 -0.10 6.06 16 20 O -0.53 -7.59 16.37 5.32 0.09 -7.50 16 21 C -0.07 -0.57 5.90 -104.63 -0.62 -1.18 16 22 C -0.11 -0.70 9.48 -39.52 -0.37 -1.07 16 23 C 0.11 0.73 11.18 -16.89 -0.19 0.54 16 24 N -0.29 -3.05 3.94 -12.43 -0.05 -3.10 16 25 N -0.11 -1.36 13.98 60.35 0.84 -0.51 16 26 N -0.01 -0.12 13.35 60.35 0.81 0.68 16 27 N -0.31 -4.21 12.27 31.03 0.38 -3.83 16 28 C 0.24 2.66 8.02 -156.36 -1.25 1.40 16 29 C -0.03 -0.25 9.70 -38.65 -0.37 -0.62 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.82 4.62 -51.93 -0.24 0.58 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 1.07 7.54 -51.93 -0.39 0.68 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.87 7.85 -51.93 -0.41 0.46 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.11 1.89 4.50 -51.92 -0.23 1.66 16 40 H 0.06 0.85 8.11 -51.93 -0.42 0.43 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.40 3.36 6.54 -40.82 -0.27 3.09 16 44 H 0.18 0.63 6.46 -52.49 -0.34 0.30 16 45 H 0.19 0.65 8.06 -52.48 -0.42 0.23 16 46 H 0.18 1.58 7.67 -52.48 -0.40 1.18 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -31.79 372.50 -6.48 -38.27 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.96 Total: 1.04 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -3.99 Total: -2.33 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 2.03 Total: -51.73 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.09 Total: -7.50 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.27 Total: 16.64 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.79 -6.48 -38.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663092672.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.180 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds