Wall clock time and date at job start Wed Apr 1 2020 04:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99968 * 2 1 4 4 H 1.48504 * 109.47076 * 273.98645 * 3 2 1 5 5 H 1.48501 * 109.47198 * 33.99047 * 3 2 1 6 6 H 1.48507 * 109.47347 * 153.99279 * 3 2 1 7 7 C 1.38815 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99761 * 352.04973 * 7 2 1 9 9 N 1.36936 * 120.00370 * 172.04532 * 7 2 1 10 10 C 1.47429 * 125.64504 * 307.09493 * 9 7 2 11 11 C 1.54912 * 104.82806 * 155.90501 * 10 9 7 12 12 C 1.55149 * 101.58398 * 37.00839 * 11 10 9 13 13 C 1.47016 * 125.64808 * 127.12977 * 9 7 2 14 14 H 1.08999 * 109.88481 * 300.59776 * 13 9 7 15 15 C 1.52997 * 109.88302 * 61.61430 * 13 9 7 16 16 C 1.52999 * 109.47025 * 289.46194 * 15 13 9 17 17 C 1.53000 * 109.47594 * 186.09125 * 16 15 13 18 18 N 1.46492 * 109.47284 * 180.02562 * 17 16 15 19 19 C 1.34780 * 120.00186 * 180.02562 * 18 17 16 20 20 O 1.21556 * 119.99441 * 359.97438 * 19 18 17 21 21 C 1.47820 * 120.00528 * 180.02562 * 19 18 17 22 22 C 1.41586 * 120.37100 * 359.97438 * 21 19 18 23 23 C 1.34815 * 120.11200 * 179.97438 * 22 21 19 24 24 N 1.36057 * 120.83126 * 0.04623 * 23 22 21 25 25 N 1.40248 * 133.73129 * 179.97438 * 24 23 22 26 26 N 1.28978 * 107.01882 * 180.02562 * 25 24 23 27 27 N 1.28543 * 110.84148 * 359.97438 * 26 25 24 28 28 C 1.32619 * 110.18690 * 0.02562 * 27 26 25 29 29 C 1.38447 * 120.37860 * 179.72432 * 21 19 18 30 30 H 0.96996 * 119.99936 * 359.97438 * 1 2 3 31 31 H 1.08999 * 110.36686 * 274.73839 * 10 9 7 32 32 H 1.08996 * 110.36975 * 37.06391 * 10 9 7 33 33 H 1.09000 * 111.00180 * 155.08595 * 11 10 9 34 34 H 1.09003 * 111.00170 * 278.89291 * 11 10 9 35 35 H 1.09001 * 110.72007 * 206.13694 * 12 11 10 36 36 H 1.08999 * 110.72076 * 82.86225 * 12 11 10 37 37 H 1.09004 * 109.47233 * 169.46308 * 15 13 9 38 38 H 1.09005 * 109.47329 * 49.46108 * 15 13 9 39 39 H 1.09009 * 109.47159 * 66.09040 * 16 15 13 40 40 H 1.09002 * 109.47104 * 306.09528 * 16 15 13 41 41 H 1.09000 * 109.46818 * 300.00669 * 17 16 15 42 42 H 1.08999 * 109.46646 * 60.00221 * 17 16 15 43 43 H 0.97000 * 120.00231 * 0.02562 * 18 17 16 44 44 H 1.08002 * 119.93996 * 0.02562 * 22 21 19 45 45 H 1.08006 * 119.58150 * 180.02562 * 23 22 21 46 46 H 1.08006 * 120.51933 * 359.97438 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4133 2.0951 -1.3967 5 1 1.4923 2.6268 0.7827 6 1 3.5874 1.4173 0.6139 7 6 2.0103 -1.2021 0.0005 8 1 1.4781 -2.1329 0.1303 9 7 3.3698 -1.2080 -0.1636 10 6 4.1052 -0.5573 -1.2633 11 6 5.5262 -0.3100 -0.6981 12 6 5.7455 -1.5828 0.1615 13 6 4.3375 -1.8646 0.7273 14 1 4.2514 -1.4559 1.7340 15 6 4.0799 -3.3725 0.7543 16 6 2.7761 -3.6538 1.5038 17 6 2.5952 -5.1647 1.6635 18 7 1.3465 -5.4339 2.3805 19 6 0.9777 -6.7044 2.6381 20 8 1.6811 -7.6269 2.2749 21 6 -0.2826 -6.9762 3.3611 22 6 -1.1081 -5.9078 3.7873 23 6 -2.2567 -6.1617 4.4459 24 7 -2.6401 -7.4397 4.7119 25 7 -3.7482 -8.0045 5.3602 26 7 -3.5950 -9.2846 5.3235 27 7 -2.5047 -9.5976 4.7188 28 6 -1.8725 -8.5025 4.3190 29 6 -0.6717 -8.2785 3.6248 30 1 -0.4850 0.8400 0.0004 31 1 4.1513 -1.2158 -2.1306 32 1 3.6325 0.3883 -1.5285 33 1 6.2609 -0.2494 -1.5010 34 1 5.5503 0.5881 -0.0808 35 1 6.4527 -1.3868 0.9674 36 1 6.0854 -2.4127 -0.4580 37 1 4.9053 -3.8731 1.2606 38 1 3.9999 -3.7459 -0.2667 39 1 1.9374 -3.2451 0.9400 40 1 2.8145 -3.1864 2.4878 41 1 2.5568 -5.6320 0.6795 42 1 3.4338 -5.5733 2.2273 43 1 0.7850 -4.6978 2.6700 44 1 -0.8175 -4.8877 3.5836 45 1 -2.8802 -5.3402 4.7667 46 1 -0.0598 -9.1091 3.3052 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663092672.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:30 Heat of formation + Delta-G solvation = 113.862433 kcal Electronic energy + Delta-G solvation = -29018.915140 eV Core-core repulsion = 24946.495603 eV Total energy + Delta-G solvation = -4072.419537 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.60293 -41.29000 -39.65042 -39.31682 -36.70557 -35.21502 -34.55283 -34.12822 -33.12981 -31.68982 -31.65683 -29.93130 -27.11636 -26.24414 -25.95040 -25.06927 -24.01902 -22.81426 -22.22742 -21.63748 -20.85474 -19.85221 -19.19297 -18.84059 -18.10527 -18.04116 -17.78433 -16.91582 -16.70626 -16.27779 -16.18911 -15.75930 -15.68900 -14.98844 -14.93212 -14.66939 -14.49358 -14.24089 -14.04112 -13.92548 -13.73002 -13.55301 -13.35489 -13.11519 -13.00777 -12.92576 -12.77718 -12.42382 -12.36856 -12.32621 -12.07424 -11.84493 -11.58165 -11.52868 -11.37306 -11.32657 -11.08216 -11.05476 -10.57181 -10.17311 -9.82556 -8.35737 -8.00113 -5.71091 -1.12842 -0.77326 0.54061 0.86109 1.30697 1.35354 1.43823 1.55509 1.77465 2.20024 2.48518 2.54302 2.85548 3.17657 3.21156 3.41225 3.49820 3.68306 3.85684 3.97094 4.03751 4.08418 4.21164 4.26407 4.30251 4.31991 4.48473 4.55250 4.63308 4.64829 4.78318 4.80080 4.88251 4.90513 4.96720 5.05476 5.08556 5.17567 5.21563 5.24867 5.36478 5.42159 5.48844 5.63861 5.73555 6.08621 6.36732 6.51813 6.98641 7.02540 7.06025 7.62415 8.41573 9.05495 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.016267 B = 0.002233 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.889131 B =12534.211177 C =13988.436050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.008 4.008 3 Si 0.936 3.064 4 H -0.292 1.292 5 H -0.313 1.313 6 H -0.251 1.251 7 C -0.233 4.233 8 H 0.073 0.927 9 N -0.619 5.619 10 C 0.108 3.892 11 C -0.133 4.133 12 C -0.117 4.117 13 C 0.147 3.853 14 H 0.031 0.969 15 C -0.108 4.108 16 C -0.131 4.131 17 C 0.128 3.872 18 N -0.701 5.701 19 C 0.560 3.440 20 O -0.561 6.561 21 C -0.056 4.056 22 C -0.096 4.096 23 C 0.113 3.887 24 N -0.293 5.293 25 N -0.122 5.122 26 N -0.030 5.030 27 N -0.341 5.341 28 C 0.228 3.772 29 C -0.030 4.030 30 H 0.260 0.740 31 H 0.031 0.969 32 H 0.016 0.984 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.050 0.950 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.416 0.584 44 H 0.208 0.792 45 H 0.228 0.772 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.320 -7.409 7.354 11.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.206 4.206 3 Si 0.767 3.233 4 H -0.220 1.220 5 H -0.242 1.242 6 H -0.174 1.174 7 C -0.362 4.362 8 H 0.090 0.910 9 N -0.346 5.346 10 C -0.016 4.016 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.041 3.959 14 H 0.049 0.951 15 C -0.147 4.147 16 C -0.169 4.169 17 C 0.005 3.995 18 N -0.353 5.353 19 C 0.346 3.654 20 O -0.440 6.440 21 C -0.068 4.068 22 C -0.120 4.120 23 C -0.013 4.013 24 N -0.073 5.073 25 N -0.106 5.106 26 N -0.023 5.023 27 N -0.203 5.203 28 C -0.025 4.025 29 C -0.055 4.055 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.034 0.966 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.254 0.746 44 H 0.225 0.775 45 H 0.244 0.756 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 4.388 -8.797 7.835 12.571 hybrid contribution -0.065 1.934 -0.488 1.996 sum 4.323 -6.863 7.346 10.944 Atomic orbital electron populations 1.69852 1.07189 1.27105 1.54843 1.26399 0.95586 1.01040 0.97549 0.85858 0.79876 0.80783 0.76803 1.22002 1.24172 1.17443 1.18673 0.80883 0.92111 1.44569 0.90966 1.44765 1.01672 1.63679 1.24519 1.21983 0.92541 0.94972 0.92114 1.22768 0.95947 0.98314 1.00040 1.22591 0.95760 0.97395 0.99704 1.21324 0.89056 0.92240 0.93235 0.95121 1.21774 0.96662 0.96588 0.99722 1.21995 1.00556 0.92769 1.01536 1.21441 0.85187 0.96709 0.96143 1.45908 1.25074 1.07184 1.57101 1.17938 0.84704 0.83341 0.79411 1.90826 1.54805 1.44851 1.53537 1.20280 0.95373 0.93377 0.97777 1.21654 0.91787 1.01955 0.96558 1.22398 0.97843 0.83514 0.97548 1.49187 1.15240 1.09154 1.33716 1.82720 1.04612 1.02657 1.20562 1.77850 1.09664 1.05931 1.08839 1.75142 1.03692 1.22863 1.18580 1.22801 0.95991 0.84307 0.99389 1.20770 0.90874 0.99129 0.94688 0.93080 0.95142 0.96611 0.88967 0.92644 0.89528 0.89903 0.90272 0.93156 0.90632 0.91481 0.92461 0.90774 0.74566 0.77497 0.75572 0.80084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -53.22 13.97 21.65 0.30 -52.91 16 2 C -0.01 -0.43 5.50 84.86 0.47 0.03 16 3 Si 0.94 43.32 25.12 68.60 1.72 45.05 16 4 H -0.29 -13.61 7.00 99.48 0.70 -12.91 16 5 H -0.31 -14.85 7.11 99.48 0.71 -14.14 16 6 H -0.25 -10.90 6.44 99.48 0.64 -10.26 16 7 C -0.23 -11.32 9.35 84.03 0.79 -10.53 16 8 H 0.07 3.68 5.18 -2.91 -0.02 3.66 16 9 N -0.62 -25.25 2.38 -668.26 -1.59 -26.84 16 10 C 0.11 4.06 6.19 86.86 0.54 4.60 16 11 C -0.13 -3.79 7.08 31.98 0.23 -3.56 16 12 C -0.12 -2.91 6.47 31.78 0.21 -2.71 16 13 C 0.15 4.65 3.21 45.34 0.15 4.80 16 14 H 0.03 1.04 8.10 -2.39 -0.02 1.02 16 15 C -0.11 -2.87 4.69 30.59 0.14 -2.72 16 16 C -0.13 -3.44 4.86 30.59 0.15 -3.29 16 17 C 0.13 2.85 5.67 86.38 0.49 3.34 16 18 N -0.70 -13.07 5.51 -466.01 -2.57 -15.64 16 19 C 0.56 11.48 7.78 86.78 0.67 12.15 16 20 O -0.56 -15.66 16.37 -3.89 -0.06 -15.73 16 21 C -0.06 -0.87 5.90 -19.87 -0.12 -0.99 16 22 C -0.10 -0.90 9.48 22.31 0.21 -0.69 16 23 C 0.11 1.19 11.18 83.25 0.93 2.12 16 24 N -0.29 -5.75 3.94 -193.24 -0.76 -6.51 16 25 N -0.12 -3.06 13.98 37.02 0.52 -2.54 16 26 N -0.03 -0.85 13.35 37.02 0.49 -0.36 16 27 N -0.34 -9.37 12.27 -55.73 -0.68 -10.06 16 28 C 0.23 5.06 8.02 134.05 1.07 6.13 16 29 C -0.03 -0.56 9.70 22.87 0.22 -0.33 16 30 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 31 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.02 0.66 4.62 -2.39 -0.01 0.65 16 33 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.05 1.68 7.54 -2.39 -0.02 1.66 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.08 1.81 7.85 -2.39 -0.02 1.79 16 37 H 0.08 1.65 8.14 -2.38 -0.02 1.64 16 38 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.08 2.56 4.50 -2.38 -0.01 2.55 16 40 H 0.07 1.68 8.11 -2.39 -0.02 1.66 16 41 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 43 H 0.42 5.82 6.54 -92.71 -0.61 5.21 16 44 H 0.21 0.64 6.46 -2.91 -0.02 0.62 16 45 H 0.23 0.66 8.06 -2.91 -0.02 0.64 16 46 H 0.18 3.21 7.67 -2.91 -0.02 3.19 16 Total: -1.00 -71.36 372.50 3.87 -67.49 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.35 Total: 9.70 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 6.15 Total: 8.35 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -4.29 Total: -114.86 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.06 Total: -15.73 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.72 Total: 45.05 kcal Total: -71.36 3.87 -67.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663092672.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.349 kcal (2) G-P(sol) polarization free energy of solvation -71.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds