Wall clock time and date at job start Wed Apr 1 2020 04:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99977 * 2 1 4 4 H 1.48502 * 109.47271 * 180.27566 * 3 2 1 5 5 H 1.48499 * 109.46998 * 300.27539 * 3 2 1 6 6 H 1.48498 * 109.47262 * 60.27384 * 3 2 1 7 7 C 1.38818 * 120.00049 * 180.27227 * 2 1 3 8 8 H 1.07998 * 120.00161 * 179.72374 * 7 2 1 9 9 N 1.36936 * 119.99592 * 359.72616 * 7 2 1 10 10 C 1.46506 * 119.99452 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46799 * 174.90448 * 10 9 7 12 12 N 1.46508 * 110.01578 * 55.14428 * 11 10 9 13 13 C 1.34776 * 119.99573 * 65.17902 * 12 11 10 14 14 O 1.21278 * 120.00239 * 354.90004 * 13 12 11 15 15 C 1.50700 * 119.99626 * 174.90218 * 13 12 11 16 16 C 1.50706 * 109.47062 * 179.97438 * 15 13 12 17 17 N 1.32614 * 125.18108 * 90.02844 * 16 15 13 18 18 C 1.32824 * 109.75244 * 179.97438 * 17 16 15 19 19 N 1.33829 * 132.49977 * 180.02562 * 18 17 16 20 20 C 1.31344 * 120.86218 * 179.97438 * 19 18 17 21 21 C 1.40045 * 120.31580 * 359.97438 * 20 19 18 22 22 C 1.35779 * 119.23819 * 0.02562 * 21 20 19 23 23 N 1.35975 * 119.02185 * 359.97438 * 22 21 20 24 24 N 1.31180 * 125.18543 * 269.72265 * 16 15 13 25 25 C 1.54258 * 110.03629 * 293.70293 * 11 10 9 26 26 C 1.54889 * 104.19983 * 217.10645 * 25 11 10 27 27 C 1.54888 * 102.74757 * 37.93901 * 26 25 11 28 28 C 1.53873 * 110.03292 * 176.53381 * 11 10 9 29 29 H 0.96995 * 120.00186 * 359.72784 * 1 2 3 30 30 H 0.96993 * 120.00354 * 359.97438 * 9 7 2 31 31 H 1.08992 * 109.47280 * 294.90644 * 10 9 7 32 32 H 1.09000 * 109.46837 * 54.91138 * 10 9 7 33 33 H 0.96993 * 120.00090 * 245.17366 * 12 11 10 34 34 H 1.08998 * 109.47639 * 299.99921 * 15 13 12 35 35 H 1.09007 * 109.47078 * 60.00065 * 15 13 12 36 36 H 1.07998 * 119.84232 * 179.97438 * 20 19 18 37 37 H 1.08003 * 120.38341 * 180.02562 * 21 20 19 38 38 H 1.08000 * 120.48644 * 180.02562 * 22 21 20 39 39 H 1.09007 * 110.48824 * 335.78729 * 25 11 10 40 40 H 1.09008 * 110.49110 * 98.42411 * 25 11 10 41 41 H 1.09004 * 110.75399 * 279.62546 * 26 25 11 42 42 H 1.08993 * 110.75933 * 156.25636 * 26 25 11 43 43 H 1.09001 * 110.49064 * 203.38245 * 27 26 25 44 44 H 1.09009 * 110.48457 * 80.73700 * 27 26 25 45 45 H 1.09000 * 110.03496 * 238.57153 * 28 11 10 46 46 H 1.09002 * 110.02892 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0067 5 1 1.8864 2.3993 -1.2091 6 1 1.8965 2.3936 1.2158 7 6 2.0103 -1.2022 -0.0057 8 1 3.0903 -1.2022 -0.0102 9 7 1.3255 -2.3880 -0.0057 10 6 2.0581 -3.6568 -0.0123 11 6 1.0694 -4.8172 0.1173 12 7 0.0564 -4.7331 -0.9378 13 6 0.4144 -4.8794 -2.2288 14 8 1.5855 -4.9881 -2.5248 15 6 -0.6405 -4.9078 -3.3047 16 6 0.0179 -5.0793 -4.6494 17 7 0.2773 -6.2429 -5.2304 18 6 0.8604 -6.0376 -6.4059 19 7 1.3064 -6.8724 -7.3520 20 6 1.8576 -6.4119 -8.4517 21 6 1.9876 -5.0321 -8.6529 22 6 1.5380 -4.1774 -7.6985 23 7 0.9722 -4.6857 -6.5714 24 7 0.4168 -4.1003 -5.4261 25 6 0.3938 -4.7836 1.5037 26 6 0.2540 -6.2758 1.8945 27 6 1.5690 -6.8942 1.3583 28 6 1.8165 -6.1591 0.0248 29 1 -0.4850 0.8400 0.0040 30 1 0.3556 -2.3881 -0.0013 31 1 2.6103 -3.7526 -0.9470 32 1 2.7552 -3.6782 0.8254 33 1 -0.8719 -4.5721 -0.7071 34 1 -1.3211 -5.7398 -3.1243 35 1 -1.1990 -3.9718 -3.2907 36 1 2.2123 -7.1005 -9.2042 37 1 2.4403 -4.6522 -9.5569 38 1 1.6277 -3.1095 -7.8331 39 1 1.0233 -4.2584 2.2222 40 1 -0.5871 -4.3127 1.4389 41 1 -0.6111 -6.7238 1.4054 42 1 0.1879 -6.3872 2.9767 43 1 1.4458 -7.9636 1.1873 44 1 2.3883 -6.7099 2.0533 45 1 1.4249 -6.7482 -0.8045 46 1 2.8836 -5.9837 -0.1119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665963819.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:02 Heat of formation + Delta-G solvation = 115.321468 kcal Electronic energy + Delta-G solvation = -30217.340014 eV Core-core repulsion = 26144.983745 eV Total energy + Delta-G solvation = -4072.356269 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.01000 -40.08906 -38.99895 -37.45427 -34.73002 -34.25490 -33.16618 -32.43504 -31.01301 -30.80623 -29.53093 -28.54592 -27.68428 -24.91628 -24.44418 -23.95336 -22.19350 -21.90385 -20.66742 -20.14302 -18.87545 -18.56231 -18.25561 -17.12866 -17.03770 -16.52261 -16.29899 -15.90649 -15.16277 -14.86672 -14.60324 -14.44600 -14.20189 -13.65207 -13.55989 -13.48845 -13.14504 -13.02777 -12.78905 -12.74265 -12.64310 -12.17286 -12.11562 -11.82261 -11.41409 -11.10317 -10.89928 -10.83469 -10.80686 -10.63587 -10.41141 -10.35276 -10.25331 -10.20328 -9.97284 -9.85836 -9.64616 -9.33518 -8.94621 -8.76276 -8.51227 -6.79919 -5.70506 -2.95982 0.20073 0.54556 1.75040 2.37236 3.00497 3.07433 3.23653 3.46438 3.52473 3.54524 3.57863 3.82430 4.03337 4.33214 4.55711 4.63426 4.75388 4.79360 4.90601 5.01981 5.07748 5.18998 5.28989 5.37872 5.58968 5.59886 5.63845 5.70019 5.74648 5.85457 5.96001 5.97977 6.03402 6.08550 6.10165 6.12724 6.25821 6.35562 6.46286 6.55982 6.59860 6.64963 6.98166 7.18823 7.22714 7.77734 7.83031 7.91345 8.49435 8.64113 9.60982 10.19795 10.56169 11.52936 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.008742 B = 0.003560 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.075006 B = 7862.891336 C =10293.492901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 0.904 3.096 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.228 4.228 8 H 0.068 0.932 9 N -0.725 5.725 10 C 0.146 3.854 11 C 0.172 3.828 12 N -0.708 5.708 13 C 0.530 3.470 14 O -0.524 6.524 15 C -0.057 4.057 16 C 0.305 3.695 17 N -0.512 5.512 18 C 0.438 3.562 19 N -0.455 5.455 20 C 0.203 3.797 21 C -0.231 4.231 22 C 0.178 3.822 23 N -0.326 5.326 24 N -0.311 5.311 25 C -0.117 4.117 26 C -0.125 4.125 27 C -0.124 4.124 28 C -0.117 4.117 29 H 0.252 0.748 30 H 0.382 0.618 31 H 0.036 0.964 32 H 0.025 0.975 33 H 0.398 0.602 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.189 0.811 37 H 0.173 0.827 38 H 0.183 0.817 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.341 -14.819 -13.083 19.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.211 4.211 3 Si 0.735 3.265 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.360 4.360 8 H 0.086 0.914 9 N -0.369 5.369 10 C 0.017 3.983 11 C 0.086 3.914 12 N -0.360 5.360 13 C 0.314 3.686 14 O -0.399 6.399 15 C -0.099 4.099 16 C 0.023 3.977 17 N -0.244 5.244 18 C 0.078 3.922 19 N -0.170 5.170 20 C 0.016 3.984 21 C -0.256 4.256 22 C 0.040 3.960 23 N -0.105 5.105 24 N -0.141 5.141 25 C -0.155 4.155 26 C -0.162 4.162 27 C -0.162 4.162 28 C -0.156 4.156 29 H 0.062 0.938 30 H 0.215 0.785 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.233 0.767 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.206 0.794 37 H 0.191 0.809 38 H 0.200 0.800 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.763 -15.250 -12.453 19.704 hybrid contribution 0.006 2.052 -0.423 2.095 sum -0.757 -13.198 -12.877 18.455 Atomic orbital electron populations 1.69649 1.04965 1.25218 1.58706 1.24660 0.95511 0.97406 1.03562 0.86150 0.78844 0.84406 0.77063 1.20693 1.22046 1.21987 1.19284 0.91019 0.84273 1.41410 0.91427 1.42198 1.05640 0.99713 1.89373 1.21150 0.93061 0.85104 0.98948 1.21239 0.88614 0.95438 0.86121 1.45916 1.11424 1.73395 1.05219 1.19734 0.89287 0.76508 0.83077 1.90716 1.18789 1.48446 1.81992 1.20096 0.97766 1.06804 0.85236 1.23535 0.93306 0.85063 0.95778 1.70661 1.23355 1.26056 1.04341 1.22714 0.96334 0.79271 0.93892 1.67984 1.13548 1.34356 1.01071 1.23541 0.88282 0.94324 0.92260 1.21914 1.07545 0.94205 1.01955 1.22203 0.89513 1.02195 0.82133 1.48812 1.38068 1.09354 1.14297 1.78706 1.22846 1.18484 0.94060 1.22583 1.01409 0.96082 0.95384 1.22532 0.97596 0.95820 1.00285 1.22386 0.97722 0.99070 0.97020 1.22407 1.01048 0.94898 0.97242 0.93810 0.78474 0.94612 0.95704 0.76745 0.85719 0.85635 0.79432 0.80930 0.80015 0.89655 0.90900 0.91738 0.91701 0.92046 0.91668 0.91384 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.30 13.06 55.49 0.72 -27.57 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 3 Si 0.90 23.10 29.55 -169.99 -5.02 18.07 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 7 C -0.23 -6.62 9.99 -15.06 -0.15 -6.77 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.68 5.27 -59.91 -0.32 -18.99 16 10 C 0.15 3.20 4.64 -4.04 -0.02 3.18 16 11 C 0.17 2.90 0.57 -130.70 -0.07 2.83 16 12 N -0.71 -11.23 4.50 -46.57 -0.21 -11.44 16 13 C 0.53 9.38 6.87 -10.99 -0.08 9.31 16 14 O -0.52 -11.43 13.30 5.56 0.07 -11.36 16 15 C -0.06 -0.82 6.33 -29.03 -0.18 -1.00 16 16 C 0.30 5.31 6.59 -157.01 -1.03 4.27 16 17 N -0.51 -9.19 11.25 -11.80 -0.13 -9.33 16 18 C 0.44 7.04 8.99 -323.13 -2.91 4.13 16 19 N -0.46 -5.87 10.48 -13.82 -0.14 -6.01 16 20 C 0.20 1.45 11.27 -17.08 -0.19 1.25 16 21 C -0.23 -1.30 10.06 -39.79 -0.40 -1.70 16 22 C 0.18 1.65 11.32 -16.60 -0.19 1.46 16 23 N -0.33 -4.86 3.91 -13.84 -0.05 -4.91 16 24 N -0.31 -5.56 12.78 32.39 0.41 -5.14 16 25 C -0.12 -1.73 5.74 -25.08 -0.14 -1.88 16 26 C -0.12 -1.48 6.91 -24.74 -0.17 -1.66 16 27 C -0.12 -1.55 6.83 -25.07 -0.17 -1.72 16 28 C -0.12 -1.82 5.22 -25.61 -0.13 -1.96 16 29 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.38 9.97 7.19 -40.82 -0.29 9.68 16 31 H 0.04 0.90 6.56 -51.93 -0.34 0.56 16 32 H 0.03 0.55 8.04 -51.93 -0.42 0.13 16 33 H 0.40 5.24 8.23 -40.82 -0.34 4.90 16 34 H 0.12 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.13 1.64 8.14 -51.93 -0.42 1.21 16 36 H 0.19 0.44 8.06 -52.49 -0.42 0.01 16 37 H 0.17 0.19 8.06 -52.48 -0.42 -0.23 16 38 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.08 1.39 7.79 -51.92 -0.40 0.99 16 40 H 0.07 1.06 7.70 -51.92 -0.40 0.66 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 45 H 0.07 1.11 6.99 -51.93 -0.36 0.75 16 46 H 0.07 1.19 7.67 -51.93 -0.40 0.79 16 LS Contribution 381.58 15.07 5.75 5.75 Total: -1.00 -40.52 381.58 -11.16 -51.68 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -6.30 Total: 10.08 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: -5.94 Total: 9.18 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: 0.28 Total: -83.40 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.07 Total: -11.36 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -40.52 -11.16 -51.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665963819.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.000 kcal (2) G-P(sol) polarization free energy of solvation -40.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds