Wall clock time and date at job start Wed Apr 1 2020 04:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99977 * 2 1 4 4 H 1.48502 * 109.47271 * 180.27566 * 3 2 1 5 5 H 1.48499 * 109.46998 * 300.27539 * 3 2 1 6 6 H 1.48498 * 109.47262 * 60.27384 * 3 2 1 7 7 C 1.38818 * 120.00049 * 180.27227 * 2 1 3 8 8 H 1.07998 * 120.00161 * 179.72374 * 7 2 1 9 9 N 1.36936 * 119.99592 * 359.72616 * 7 2 1 10 10 C 1.46506 * 119.99452 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46799 * 174.90448 * 10 9 7 12 12 N 1.46508 * 110.01578 * 55.14428 * 11 10 9 13 13 C 1.34776 * 119.99573 * 65.17902 * 12 11 10 14 14 O 1.21278 * 120.00239 * 354.90004 * 13 12 11 15 15 C 1.50700 * 119.99626 * 174.90218 * 13 12 11 16 16 C 1.50706 * 109.47062 * 179.97438 * 15 13 12 17 17 N 1.32614 * 125.18108 * 90.02844 * 16 15 13 18 18 C 1.32824 * 109.75244 * 179.97438 * 17 16 15 19 19 N 1.33829 * 132.49977 * 180.02562 * 18 17 16 20 20 C 1.31344 * 120.86218 * 179.97438 * 19 18 17 21 21 C 1.40045 * 120.31580 * 359.97438 * 20 19 18 22 22 C 1.35779 * 119.23819 * 0.02562 * 21 20 19 23 23 N 1.35975 * 119.02185 * 359.97438 * 22 21 20 24 24 N 1.31180 * 125.18543 * 269.72265 * 16 15 13 25 25 C 1.54258 * 110.03629 * 293.70293 * 11 10 9 26 26 C 1.54889 * 104.19983 * 217.10645 * 25 11 10 27 27 C 1.54888 * 102.74757 * 37.93901 * 26 25 11 28 28 C 1.53873 * 110.03292 * 176.53381 * 11 10 9 29 29 H 0.96995 * 120.00186 * 359.72784 * 1 2 3 30 30 H 0.96993 * 120.00354 * 359.97438 * 9 7 2 31 31 H 1.08992 * 109.47280 * 294.90644 * 10 9 7 32 32 H 1.09000 * 109.46837 * 54.91138 * 10 9 7 33 33 H 0.96993 * 120.00090 * 245.17366 * 12 11 10 34 34 H 1.08998 * 109.47639 * 299.99921 * 15 13 12 35 35 H 1.09007 * 109.47078 * 60.00065 * 15 13 12 36 36 H 1.07998 * 119.84232 * 179.97438 * 20 19 18 37 37 H 1.08003 * 120.38341 * 180.02562 * 21 20 19 38 38 H 1.08000 * 120.48644 * 180.02562 * 22 21 20 39 39 H 1.09007 * 110.48824 * 335.78729 * 25 11 10 40 40 H 1.09008 * 110.49110 * 98.42411 * 25 11 10 41 41 H 1.09004 * 110.75399 * 279.62546 * 26 25 11 42 42 H 1.08993 * 110.75933 * 156.25636 * 26 25 11 43 43 H 1.09001 * 110.49064 * 203.38245 * 27 26 25 44 44 H 1.09009 * 110.48457 * 80.73700 * 27 26 25 45 45 H 1.09000 * 110.03496 * 238.57153 * 28 11 10 46 46 H 1.09002 * 110.02892 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0067 5 1 1.8864 2.3993 -1.2091 6 1 1.8965 2.3936 1.2158 7 6 2.0103 -1.2022 -0.0057 8 1 3.0903 -1.2022 -0.0102 9 7 1.3255 -2.3880 -0.0057 10 6 2.0581 -3.6568 -0.0123 11 6 1.0694 -4.8172 0.1173 12 7 0.0564 -4.7331 -0.9378 13 6 0.4144 -4.8794 -2.2288 14 8 1.5855 -4.9881 -2.5248 15 6 -0.6405 -4.9078 -3.3047 16 6 0.0179 -5.0793 -4.6494 17 7 0.2773 -6.2429 -5.2304 18 6 0.8604 -6.0376 -6.4059 19 7 1.3064 -6.8724 -7.3520 20 6 1.8576 -6.4119 -8.4517 21 6 1.9876 -5.0321 -8.6529 22 6 1.5380 -4.1774 -7.6985 23 7 0.9722 -4.6857 -6.5714 24 7 0.4168 -4.1003 -5.4261 25 6 0.3938 -4.7836 1.5037 26 6 0.2540 -6.2758 1.8945 27 6 1.5690 -6.8942 1.3583 28 6 1.8165 -6.1591 0.0248 29 1 -0.4850 0.8400 0.0040 30 1 0.3556 -2.3881 -0.0013 31 1 2.6103 -3.7526 -0.9470 32 1 2.7552 -3.6782 0.8254 33 1 -0.8719 -4.5721 -0.7071 34 1 -1.3211 -5.7398 -3.1243 35 1 -1.1990 -3.9718 -3.2907 36 1 2.2123 -7.1005 -9.2042 37 1 2.4403 -4.6522 -9.5569 38 1 1.6277 -3.1095 -7.8331 39 1 1.0233 -4.2584 2.2222 40 1 -0.5871 -4.3127 1.4389 41 1 -0.6111 -6.7238 1.4054 42 1 0.1879 -6.3872 2.9767 43 1 1.4458 -7.9636 1.1873 44 1 2.3883 -6.7099 2.0533 45 1 1.4249 -6.7482 -0.8045 46 1 2.8836 -5.9837 -0.1119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665963819.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:01 Heat of formation + Delta-G solvation = 86.603554 kcal Electronic energy + Delta-G solvation = -30218.585316 eV Core-core repulsion = 26144.983745 eV Total energy + Delta-G solvation = -4073.601571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.00090 -41.45327 -39.92447 -38.78068 -36.18590 -35.63966 -34.59836 -33.53641 -32.90188 -31.81600 -30.73250 -29.74476 -29.18140 -26.32721 -25.69525 -24.89691 -24.04301 -23.10509 -21.82363 -21.30805 -20.34809 -19.48185 -19.19213 -19.11071 -18.34530 -17.45625 -17.41948 -17.03630 -16.60251 -16.31693 -15.88430 -15.72921 -15.42948 -15.13082 -15.00723 -14.67401 -14.62373 -14.22985 -14.06655 -13.78858 -13.71969 -13.59566 -13.32722 -13.12736 -13.07858 -12.85443 -12.62291 -12.25377 -12.17515 -11.99581 -11.89482 -11.77294 -11.73374 -11.39664 -11.37987 -11.11401 -11.04435 -10.86362 -10.57082 -9.96412 -9.92142 -8.96535 -7.96716 -5.22849 -0.51826 -0.32711 0.86715 1.30541 1.42286 1.43206 1.53124 1.66514 2.10933 2.33576 2.42916 2.53615 2.82675 3.35043 3.36716 3.48790 3.51787 3.71613 3.82218 3.94007 3.99300 4.13686 4.17594 4.26175 4.40025 4.41211 4.52107 4.54025 4.57242 4.69969 4.81347 4.84483 4.86973 4.93397 5.03635 5.07397 5.09552 5.09737 5.20464 5.26643 5.35875 5.36500 5.45034 5.50843 5.72730 6.26068 6.37063 6.60991 6.77363 7.31254 7.33680 8.07206 8.37831 9.26316 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.008742 B = 0.003560 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.075006 B = 7862.891336 C =10293.492901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.066 4.066 3 Si 0.967 3.033 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.286 1.286 7 C -0.247 4.247 8 H 0.060 0.940 9 N -0.727 5.727 10 C 0.150 3.850 11 C 0.175 3.825 12 N -0.698 5.698 13 C 0.525 3.475 14 O -0.571 6.571 15 C -0.050 4.050 16 C 0.289 3.711 17 N -0.553 5.553 18 C 0.419 3.581 19 N -0.492 5.492 20 C 0.214 3.786 21 C -0.187 4.187 22 C 0.138 3.862 23 N -0.335 5.335 24 N -0.357 5.357 25 C -0.113 4.113 26 C -0.111 4.111 27 C -0.117 4.117 28 C -0.112 4.112 29 H 0.252 0.748 30 H 0.379 0.621 31 H 0.000 1.000 32 H 0.021 0.979 33 H 0.413 0.587 34 H 0.159 0.841 35 H 0.137 0.863 36 H 0.244 0.756 37 H 0.233 0.767 38 H 0.205 0.795 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.241 -15.598 -14.601 21.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.259 4.259 3 Si 0.797 3.203 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.212 1.212 7 C -0.379 4.379 8 H 0.078 0.922 9 N -0.370 5.370 10 C 0.022 3.978 11 C 0.089 3.911 12 N -0.350 5.350 13 C 0.311 3.689 14 O -0.450 6.450 15 C -0.092 4.092 16 C 0.008 3.992 17 N -0.287 5.287 18 C 0.059 3.941 19 N -0.209 5.209 20 C 0.031 3.969 21 C -0.211 4.211 22 C 0.003 3.997 23 N -0.114 5.114 24 N -0.189 5.189 25 C -0.151 4.151 26 C -0.148 4.148 27 C -0.155 4.155 28 C -0.151 4.151 29 H 0.061 0.939 30 H 0.212 0.788 31 H 0.018 0.982 32 H 0.039 0.961 33 H 0.250 0.750 34 H 0.177 0.823 35 H 0.155 0.845 36 H 0.260 0.740 37 H 0.250 0.750 38 H 0.222 0.778 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.659 -16.034 -14.005 21.299 hybrid contribution 0.148 2.275 -0.248 2.293 sum -0.511 -13.759 -14.253 19.817 Atomic orbital electron populations 1.69772 1.06062 1.25881 1.59306 1.25404 0.96480 1.00403 1.03615 0.85168 0.77942 0.80278 0.76947 1.20015 1.22025 1.21245 1.19551 0.91016 0.85822 1.41487 0.92212 1.42233 1.05518 1.00186 1.89091 1.21143 0.94045 0.85790 0.96776 1.21155 0.88266 0.93912 0.87795 1.45849 1.11990 1.72536 1.04655 1.20310 0.89308 0.75383 0.83946 1.90688 1.20957 1.50620 1.82776 1.20168 0.96964 1.08738 0.83304 1.23824 0.93818 0.85090 0.96487 1.70524 1.25362 1.26811 1.06008 1.22989 0.96657 0.80194 0.94272 1.68127 1.15837 1.34488 1.02442 1.24694 0.84897 0.96323 0.90971 1.22679 1.03480 0.92972 1.01977 1.23127 0.90587 1.04464 0.81569 1.48846 1.38578 1.09143 1.14818 1.78474 1.24651 1.19996 0.95755 1.22535 1.00784 0.98590 0.93234 1.22495 0.97709 0.92891 1.01744 1.22377 0.98391 0.99825 0.94889 1.22320 0.99360 0.94295 0.99084 0.93920 0.78804 0.98165 0.96065 0.75021 0.82318 0.84547 0.73984 0.75007 0.77789 0.91327 0.90515 0.90043 0.89565 0.89995 0.91171 0.92288 0.93294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.66 13.06 21.65 0.28 -58.38 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 3 Si 0.97 47.97 29.55 68.60 2.03 50.00 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 5 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 7 C -0.25 -14.71 9.99 84.04 0.84 -13.87 16 8 H 0.06 3.58 7.83 -2.91 -0.02 3.55 16 9 N -0.73 -38.85 5.27 -343.44 -1.81 -40.66 16 10 C 0.15 6.96 4.64 86.38 0.40 7.36 16 11 C 0.18 6.09 0.57 4.32 0.00 6.09 16 12 N -0.70 -22.77 4.50 -419.65 -1.89 -24.66 16 13 C 0.53 19.56 6.87 87.66 0.60 20.16 16 14 O -0.57 -26.74 13.30 -3.02 -0.04 -26.78 16 15 C -0.05 -1.52 6.33 29.10 0.18 -1.33 16 16 C 0.29 10.73 6.59 138.69 0.91 11.65 16 17 N -0.55 -21.05 11.25 -191.24 -2.15 -23.20 16 18 C 0.42 13.92 8.99 261.60 2.35 16.27 16 19 N -0.49 -12.33 10.48 -197.64 -2.07 -14.40 16 20 C 0.21 2.31 11.27 85.20 0.96 3.27 16 21 C -0.19 -1.35 10.06 22.14 0.22 -1.13 16 22 C 0.14 2.38 11.32 83.48 0.94 3.32 16 23 N -0.33 -10.29 3.91 -197.70 -0.77 -11.06 16 24 N -0.36 -13.59 12.78 -51.44 -0.66 -14.25 16 25 C -0.11 -3.30 5.74 31.67 0.18 -3.12 16 26 C -0.11 -2.37 6.91 31.88 0.22 -2.15 16 27 C -0.12 -2.74 6.83 31.67 0.22 -2.52 16 28 C -0.11 -3.56 5.22 31.32 0.16 -3.40 16 29 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 30 H 0.38 20.38 7.19 -92.71 -0.67 19.71 16 31 H 0.00 0.02 6.56 -2.39 -0.02 0.01 16 32 H 0.02 0.99 8.04 -2.39 -0.02 0.98 16 33 H 0.41 10.85 8.23 -92.71 -0.76 10.08 16 34 H 0.16 3.53 8.14 -2.39 -0.02 3.51 16 35 H 0.14 3.73 8.14 -2.38 -0.02 3.72 16 36 H 0.24 -0.27 8.06 -2.91 -0.02 -0.30 16 37 H 0.23 -1.11 8.06 -2.91 -0.02 -1.14 16 38 H 0.21 2.32 8.06 -2.91 -0.02 2.30 16 39 H 0.07 2.24 7.79 -2.38 -0.02 2.22 16 40 H 0.08 2.17 7.70 -2.38 -0.02 2.15 16 41 H 0.08 1.51 8.14 -2.38 -0.02 1.50 16 42 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 45 H 0.06 1.99 6.99 -2.39 -0.02 1.97 16 46 H 0.05 1.74 7.67 -2.39 -0.02 1.72 16 Total: -1.00 -96.06 381.58 1.19 -94.87 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: -0.40 Total: 31.38 kcal Atomic # 6 Polarization: 28.48 SS G_CDS: 8.67 Total: 37.15 kcal Atomic # 7 Polarization: -177.54 SS G_CDS: -9.07 Total: -186.61 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.04 Total: -26.78 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -96.06 1.19 -94.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665963819.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.471 kcal (2) G-P(sol) polarization free energy of solvation -96.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds