Wall clock time and date at job start Wed Apr 1 2020 04:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 120.00007 * 2 1 4 4 H 1.48492 * 109.47553 * 270.00227 * 3 2 1 5 5 H 1.48501 * 109.47019 * 30.00466 * 3 2 1 6 6 H 1.48504 * 109.47007 * 150.00096 * 3 2 1 7 7 C 1.38815 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00181 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99815 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00089 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47468 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47434 * 179.97438 * 11 10 9 13 13 H 1.09004 * 109.49758 * 305.06878 * 12 11 10 14 14 C 1.53041 * 109.49642 * 184.99739 * 12 11 10 15 15 C 1.53044 * 109.53435 * 178.68362 * 14 12 11 16 16 C 1.53190 * 109.33886 * 61.35110 * 15 14 12 17 17 N 1.46929 * 108.77436 * 305.41547 * 16 15 14 18 18 C 1.34774 * 120.60491 * 233.53231 * 17 16 15 19 19 O 1.21575 * 120.00343 * 174.18158 * 18 17 16 20 20 C 1.47728 * 120.00082 * 354.18524 * 18 17 16 21 21 C 1.40117 * 120.35140 * 138.65067 * 20 18 17 22 22 N 1.31261 * 121.14394 * 179.75607 * 21 20 18 23 23 C 1.32718 * 121.80621 * 0.52215 * 22 21 20 24 24 N 1.37108 * 133.40812 * 179.77482 * 23 22 21 25 25 H 0.97005 * 126.58993 * 359.97438 * 24 23 22 26 26 N 1.40191 * 106.82047 * 179.97438 * 24 23 22 27 27 N 1.28667 * 109.50871 * 0.02562 * 26 24 23 28 28 C 1.35332 * 109.99780 * 359.97438 * 27 26 24 29 29 C 1.39429 * 120.34838 * 318.93286 * 20 18 17 30 30 C 1.46928 * 118.76775 * 53.54902 * 17 16 15 31 31 H 0.96990 * 119.99511 * 359.97438 * 1 2 3 32 32 H 0.97002 * 120.00393 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.47217 * 60.00517 * 10 9 7 34 34 H 1.09000 * 109.47326 * 300.00070 * 10 9 7 35 35 H 1.09002 * 109.47146 * 59.99908 * 11 10 9 36 36 H 1.09005 * 109.47208 * 300.00198 * 11 10 9 37 37 H 1.09005 * 109.45882 * 58.66922 * 14 12 11 38 38 H 1.08998 * 109.46282 * 298.70711 * 14 12 11 39 39 H 1.08994 * 109.49686 * 181.32056 * 15 14 12 40 40 H 1.08997 * 109.49707 * 301.38401 * 15 14 12 41 41 H 1.09004 * 109.58715 * 65.16733 * 16 15 14 42 42 H 1.08999 * 109.58692 * 185.58913 * 16 15 14 43 43 H 1.08000 * 119.42888 * 0.02562 * 21 20 18 44 44 H 1.08000 * 120.95435 * 359.97438 * 29 20 18 45 45 H 1.08999 * 109.58991 * 186.62461 * 30 17 16 46 46 H 1.09006 * 109.69926 * 66.27716 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0104 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 6 1.8288 -6.1448 -0.0018 13 1 2.5221 -6.1642 -0.8428 14 6 0.8396 -7.3056 -0.1281 15 6 1.6061 -8.6298 -0.1619 16 6 2.3850 -8.7986 1.1463 17 7 3.2322 -7.6152 1.3483 18 6 4.5556 -7.7478 1.5662 19 8 5.2636 -6.7614 1.6265 20 6 5.1459 -9.0919 1.7317 21 6 6.3741 -9.4043 1.1340 22 7 6.9150 -10.5919 1.2748 23 6 6.3241 -11.5509 1.9767 24 7 6.6608 -12.8471 2.2708 25 1 7.4609 -13.3156 1.9856 26 7 5.6266 -13.3651 3.0629 27 7 4.7278 -12.4618 3.2406 28 6 5.0853 -11.3218 2.6049 29 6 4.4839 -10.0648 2.4795 30 6 2.6097 -6.2849 1.3086 31 1 -0.4849 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6847 -3.7146 0.8895 34 1 2.6848 -3.7145 -0.8905 35 1 0.4375 -4.7618 -0.8914 36 1 0.4368 -4.7622 0.8886 37 1 0.2653 -7.1949 -1.0480 38 1 0.1620 -7.2999 0.7256 39 1 0.9026 -9.4546 -0.2754 40 1 2.3013 -8.6265 -1.0014 41 1 1.6866 -8.8936 1.9778 42 1 3.0095 -9.6900 1.0874 43 1 6.8866 -8.6535 0.5509 44 1 3.5340 -9.8543 2.9484 45 1 3.3829 -5.5181 1.3572 46 1 1.9298 -6.1720 2.1531 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666114720.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:25 Heat of formation + Delta-G solvation = 101.198619 kcal Electronic energy + Delta-G solvation = -29265.120544 eV Core-core repulsion = 25192.151863 eV Total energy + Delta-G solvation = -4072.968681 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.96429 -40.79658 -39.00576 -37.78948 -35.52824 -34.67595 -33.60748 -32.29836 -32.23761 -31.25275 -30.57388 -27.56510 -26.32968 -25.50261 -24.32874 -24.13581 -23.18777 -22.62650 -21.12955 -20.57865 -19.79250 -19.42044 -18.34146 -17.56657 -16.97674 -16.84913 -16.59161 -16.33503 -15.56503 -14.97564 -14.72877 -14.64255 -14.35879 -14.01643 -13.78131 -13.62809 -13.55786 -13.41329 -13.19026 -13.07182 -13.05059 -12.78248 -12.54781 -12.36871 -11.99713 -11.48800 -11.18826 -11.14947 -11.05727 -10.84118 -10.65693 -10.55972 -10.46035 -10.25807 -10.04633 -9.92456 -9.87673 -9.63048 -9.56027 -8.86873 -8.81913 -6.87104 -5.72460 -3.00615 -0.41078 0.11924 1.42511 1.47965 2.27180 2.56750 2.95563 3.25220 3.47157 3.52248 3.54238 3.59673 3.67910 4.01626 4.03257 4.29027 4.42627 4.62865 4.64012 4.72016 4.78940 4.87918 4.97626 5.04856 5.10444 5.15639 5.34594 5.50057 5.54330 5.56211 5.58923 5.64948 5.74699 5.84282 5.93739 5.99993 6.07908 6.15931 6.19224 6.31119 6.43330 6.44858 6.88744 6.89912 6.93122 7.06990 7.17771 7.75447 7.80062 8.47020 9.57901 10.16488 10.50891 11.50598 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.022044 B = 0.002011 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.875858 B =13918.493941 C =14788.659958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.150 3.850 11 C -0.119 4.119 12 C -0.095 4.095 13 H 0.075 0.925 14 C -0.116 4.116 15 C -0.134 4.134 16 C 0.095 3.905 17 N -0.601 5.601 18 C 0.567 3.433 19 O -0.519 6.519 20 C -0.194 4.194 21 C 0.234 3.766 22 N -0.487 5.487 23 C 0.293 3.707 24 N -0.483 5.483 25 H 0.455 0.545 26 N 0.020 4.980 27 N -0.192 5.192 28 C -0.074 4.074 29 C 0.052 3.948 30 C 0.114 3.886 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.021 0.979 34 H 0.017 0.983 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.188 0.812 44 H 0.162 0.838 45 H 0.103 0.897 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.286 -29.813 2.788 31.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.157 4.157 12 C -0.115 4.115 13 H 0.094 0.906 14 C -0.154 4.154 15 C -0.172 4.172 16 C -0.027 4.027 17 N -0.334 5.334 18 C 0.353 3.647 19 O -0.394 6.394 20 C -0.203 4.203 21 C 0.061 3.939 22 N -0.201 5.201 23 C 0.048 3.952 24 N -0.209 5.209 25 H 0.303 0.697 26 N 0.037 4.963 27 N -0.074 5.074 28 C -0.200 4.200 29 C 0.021 3.979 30 C -0.007 4.007 31 H 0.064 0.936 32 H 0.216 0.784 33 H 0.038 0.962 34 H 0.035 0.965 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.205 0.795 44 H 0.179 0.821 45 H 0.122 0.878 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.039 -30.653 3.272 32.125 hybrid contribution 0.235 1.476 -0.351 1.536 sum 9.274 -29.177 2.921 30.754 Atomic orbital electron populations 1.69663 1.05088 1.25555 1.58112 1.24746 0.95552 0.97703 1.03225 0.86183 0.78691 0.83822 0.77494 1.21771 1.21809 1.20725 1.19257 0.91084 0.84216 1.42222 0.91166 1.42372 1.05846 1.00121 1.89482 1.20715 0.93546 0.85569 0.97877 1.21736 0.98664 0.92867 1.02444 1.21464 0.97227 0.95183 0.97651 0.90620 1.21609 0.97731 0.93327 1.02712 1.21919 0.99470 0.98702 0.97142 1.22108 0.94154 0.87769 0.98698 1.48062 1.06720 1.08431 1.70190 1.17770 0.82014 0.87478 0.77408 1.90881 1.59801 1.38626 1.50135 1.20842 0.98677 0.95849 1.04939 1.23083 0.89176 0.90783 0.90898 1.66810 1.34391 1.00359 1.18550 1.19633 0.92297 0.87833 0.95458 1.47551 1.22167 1.08289 1.42861 0.69699 1.81755 0.91635 1.16863 1.06047 1.74914 1.19088 0.98184 1.15191 1.20350 0.97280 0.96172 1.06150 1.21252 0.97970 0.87436 0.91213 1.21931 0.97989 0.82958 0.97837 0.93598 0.78369 0.96153 0.96499 0.91490 0.91721 0.91272 0.91520 0.90595 0.91368 0.90569 0.89868 0.79545 0.82092 0.87835 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.60 13.06 55.49 0.72 -27.87 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 3 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -18.87 5.60 -59.91 -0.34 -19.20 16 10 C 0.15 3.01 6.02 -4.04 -0.02 2.99 16 11 C -0.12 -1.78 4.80 -26.73 -0.13 -1.91 16 12 C -0.10 -1.10 2.34 -90.50 -0.21 -1.32 16 13 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 14 C -0.12 -1.03 5.17 -26.69 -0.14 -1.16 16 15 C -0.13 -0.93 6.08 -26.61 -0.16 -1.09 16 16 C 0.10 0.63 4.94 -3.71 -0.02 0.62 16 17 N -0.60 -5.82 2.97 -173.92 -0.52 -6.33 16 18 C 0.57 6.17 7.32 -12.38 -0.09 6.08 16 19 O -0.52 -7.70 16.37 5.30 0.09 -7.61 16 20 C -0.19 -1.62 5.10 -104.87 -0.53 -2.16 16 21 C 0.23 1.87 10.80 -17.09 -0.18 1.68 16 22 N -0.49 -4.14 10.37 -12.04 -0.12 -4.27 16 23 C 0.29 2.46 8.49 -155.94 -1.32 1.13 16 24 N -0.48 -3.20 7.52 31.14 0.23 -2.96 16 25 H 0.45 1.46 8.96 -182.52 -1.64 -0.17 16 26 N 0.02 0.17 13.82 60.35 0.83 1.00 16 27 N -0.19 -1.80 12.40 32.17 0.40 -1.40 16 28 C -0.07 -0.64 7.27 -84.74 -0.62 -1.25 16 29 C 0.05 0.38 7.55 -38.51 -0.29 0.09 16 30 C 0.11 1.34 5.34 -3.71 -0.02 1.32 16 31 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.38 10.24 7.67 -40.82 -0.31 9.93 16 33 H 0.02 0.42 6.70 -51.93 -0.35 0.07 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.41 8.13 -51.93 -0.42 -0.01 16 42 H 0.08 0.46 4.79 -51.93 -0.25 0.22 16 43 H 0.19 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.16 0.87 6.73 -52.49 -0.35 0.52 16 45 H 0.10 1.50 5.72 -51.93 -0.30 1.20 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -34.91 375.88 -9.44 -44.35 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.39 Total: 3.35 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -3.99 Total: -2.50 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: 1.21 Total: -61.04 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: 0.09 Total: -7.61 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.91 -9.44 -44.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666114720.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.545 kcal (2) G-P(sol) polarization free energy of solvation -34.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds