Wall clock time and date at job start Wed Apr 1 2020 03:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 F 1.39905 * 109.47157 * 119.99792 * 2 1 3 5 5 C 1.52997 * 109.47232 * 239.99801 * 2 1 3 6 6 C 1.53002 * 109.46921 * 174.99994 * 5 2 1 7 7 N 1.46902 * 109.46794 * 180.02562 * 6 5 2 8 8 C 1.45952 * 111.00560 * 66.04661 * 7 6 5 9 9 C 1.52957 * 110.15037 * 223.11540 * 8 7 6 10 10 C 1.52246 * 111.72618 * 293.50392 * 9 8 7 11 11 H 1.09001 * 111.02488 * 181.31824 * 10 9 8 12 12 C 1.54206 * 106.17569 * 302.10812 * 10 9 8 13 13 C 1.53795 * 105.48756 * 107.07281 * 12 10 9 14 14 C 1.51464 * 104.64350 * 352.33998 * 13 12 10 15 15 H 1.09007 * 107.19049 * 138.15912 * 14 13 12 16 16 C 1.49538 * 110.99918 * 192.70512 * 7 6 5 17 17 N 1.48661 * 108.28934 * 59.21807 * 10 9 8 18 18 C 1.34772 * 127.72222 * 87.77032 * 17 10 9 19 19 O 1.21279 * 120.00281 * 180.02562 * 18 17 10 20 20 C 1.50701 * 119.99858 * 0.02565 * 18 17 10 21 21 S 1.81003 * 109.47210 * 179.97438 * 20 18 17 22 22 C 1.76198 * 100.00203 * 180.02562 * 21 20 18 23 23 H 1.07997 * 119.99838 * 359.97438 * 22 21 20 24 24 C 1.38798 * 120.00146 * 180.02562 * 22 21 20 25 25 N 1.31626 * 120.00034 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 119.99713 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.46913 * 90.00128 * 26 24 22 28 28 H 1.48506 * 109.46871 * 209.99890 * 26 24 22 29 29 H 1.48496 * 109.47319 * 330.00226 * 26 24 22 30 30 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 31 31 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 32 32 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47510 * 294.99830 * 5 2 1 34 34 H 1.09000 * 109.46818 * 55.00071 * 5 2 1 35 35 H 1.08998 * 109.47141 * 299.99499 * 6 5 2 36 36 H 1.08990 * 109.47355 * 60.00352 * 6 5 2 37 37 H 1.09004 * 109.35396 * 343.31603 * 8 7 6 38 38 H 1.08994 * 109.36117 * 103.03638 * 8 7 6 39 39 H 1.08993 * 109.02705 * 54.08078 * 9 8 7 40 40 H 1.09000 * 109.03210 * 172.92939 * 9 8 7 41 41 H 1.09003 * 110.23951 * 226.07893 * 12 10 9 42 42 H 1.08998 * 110.24367 * 348.06320 * 12 10 9 43 43 H 1.08997 * 110.40235 * 111.12641 * 13 12 10 44 44 H 1.08996 * 110.40375 * 233.55100 * 13 12 10 45 45 H 1.08998 * 109.56336 * 294.82937 * 16 7 6 46 46 H 1.08996 * 109.56710 * 55.18329 * 16 7 6 47 47 H 1.08998 * 109.47509 * 299.99759 * 20 18 17 48 48 H 1.08997 * 109.47116 * 60.00048 * 20 18 17 49 49 H 0.97002 * 119.99674 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9963 -0.6595 1.1423 5 6 2.0400 -0.7213 -1.2492 6 6 3.5648 -0.6133 -1.3136 7 7 4.0545 -1.3053 -2.5133 8 6 3.6069 -0.6288 -3.7267 9 6 3.1334 -1.6547 -4.7577 10 6 4.2809 -2.5200 -5.2599 11 1 3.9352 -3.2309 -6.0105 12 6 5.3221 -1.5501 -5.8542 13 6 6.4849 -1.5288 -4.8479 14 6 5.9765 -2.3171 -3.6586 15 1 6.7951 -2.9521 -3.3193 16 6 5.5374 -1.4895 -2.4580 17 7 4.8790 -3.2238 -4.0950 18 6 4.5084 -4.4074 -3.5675 19 8 5.0989 -4.8549 -2.6074 20 6 3.3603 -5.1747 -4.1708 21 16 3.1098 -6.7111 -3.2472 22 6 1.7507 -7.3876 -4.1414 23 1 1.3380 -6.8520 -4.9835 24 6 1.2096 -8.6085 -3.7629 25 7 0.1946 -9.1141 -4.4311 26 14 1.9230 -9.5347 -2.3058 27 1 1.2214 -9.1202 -1.0643 28 1 1.7442 -10.9945 -2.5117 29 1 3.3702 -9.2256 -2.1833 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.7517 -1.7715 -1.2055 34 1 1.6054 -0.2617 -2.1369 35 1 3.8532 0.4370 -1.3573 36 1 3.9994 -1.0727 -0.4259 37 1 2.7849 0.0442 -3.4829 38 1 4.4327 -0.0536 -4.1452 39 1 2.3788 -2.2951 -4.3011 40 1 2.6880 -1.1297 -5.6028 41 1 5.6674 -1.9142 -6.8219 42 1 4.8936 -0.5532 -5.9567 43 1 7.3653 -2.0096 -5.2742 44 1 6.7148 -0.5045 -4.5545 45 1 6.0274 -0.5163 -2.4866 46 1 5.8067 -2.0089 -1.5384 47 1 2.4545 -4.5703 -4.1236 48 1 3.5866 -5.4093 -5.2109 49 1 -0.1837 -9.9672 -4.1663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670947242.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:14 Heat of formation + Delta-G solvation = -76.361147 kcal Electronic energy + Delta-G solvation = -29537.396579 eV Core-core repulsion = 25539.959567 eV Total energy + Delta-G solvation = -3997.437012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -47.72937 -40.74725 -38.01757 -36.60189 -33.73496 -33.20692 -32.38759 -31.88136 -29.85406 -28.83223 -26.93942 -26.26736 -25.54761 -23.48856 -22.32706 -21.74728 -21.01785 -19.90503 -18.72452 -17.65678 -17.00198 -16.81460 -16.14718 -15.87036 -15.51119 -15.15952 -14.96594 -14.77674 -14.64349 -14.41120 -14.15250 -13.87895 -13.66217 -13.60185 -13.23591 -13.03437 -12.75949 -12.60877 -12.53856 -12.34723 -12.31546 -12.13411 -11.71943 -11.61811 -11.37715 -11.19569 -11.10209 -10.96235 -10.93985 -10.89000 -10.84174 -10.72611 -10.52219 -10.38117 -9.80091 -9.33565 -8.94722 -8.42053 -8.39154 -8.29904 -6.83515 -6.23851 -3.94021 2.74779 3.16941 3.24285 3.38143 3.55808 3.58132 3.72746 4.26074 4.35060 4.38858 4.42730 4.51277 4.53398 4.62410 4.69565 4.80482 4.81746 4.89803 4.98185 5.03824 5.08206 5.15365 5.16656 5.22308 5.27105 5.31568 5.39207 5.47796 5.49504 5.54013 5.60706 5.64801 5.71016 5.77670 5.80266 5.82126 5.88976 5.92242 5.97068 5.97693 6.08049 6.09158 6.22669 6.50274 6.94289 7.06348 7.88762 7.99460 8.46668 8.67542 9.22996 10.85474 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.008680 B = 0.003927 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.068249 B = 7128.025070 C = 9079.782862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.091 3.909 3 H 0.077 0.923 4 F -0.213 7.213 5 C -0.146 4.146 6 C 0.061 3.939 7 N -0.536 5.536 8 C 0.061 3.939 9 C -0.131 4.131 10 C 0.130 3.870 11 H 0.090 0.910 12 C -0.128 4.128 13 C -0.120 4.120 14 C 0.132 3.868 15 H 0.072 0.928 16 C 0.061 3.939 17 N -0.595 5.595 18 C 0.566 3.434 19 O -0.522 6.522 20 C -0.112 4.112 21 S -0.142 6.142 22 C -0.519 4.519 23 H 0.087 0.913 24 C 0.096 3.904 25 N -0.882 5.882 26 Si 0.856 3.144 27 H -0.267 1.267 28 H -0.275 1.275 29 H -0.235 1.235 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.028 0.972 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.040 0.960 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.091 0.909 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.634 25.337 -0.242 26.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.054 3.946 3 H 0.095 0.905 4 F -0.194 7.194 5 C -0.184 4.184 6 C -0.067 4.067 7 N -0.260 5.260 8 C -0.067 4.067 9 C -0.170 4.170 10 C 0.026 3.974 11 H 0.108 0.892 12 C -0.167 4.167 13 C -0.158 4.158 14 C 0.027 3.973 15 H 0.091 0.909 16 C -0.067 4.067 17 N -0.331 5.331 18 C 0.355 3.645 19 O -0.397 6.397 20 C -0.262 4.262 21 S 0.084 5.916 22 C -0.666 4.666 23 H 0.105 0.895 24 C -0.112 4.112 25 N -0.519 5.519 26 Si 0.680 3.320 27 H -0.192 1.192 28 H -0.200 1.200 29 H -0.159 1.159 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.047 0.953 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.059 0.941 46 H 0.101 0.899 47 H 0.112 0.888 48 H 0.109 0.891 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.161 23.910 1.235 25.294 hybrid contribution -0.394 0.768 -0.553 1.025 sum 7.767 24.677 0.682 25.880 Atomic orbital electron populations 1.22374 0.94235 1.04054 1.03132 1.21527 0.94892 0.95758 0.82438 0.90481 1.92835 1.90233 1.83394 1.52977 1.22280 0.95884 1.03306 0.96883 1.22030 0.94957 0.95896 0.93812 1.61581 1.11365 1.51733 1.01347 1.21918 0.99313 0.94906 0.90521 1.21971 0.98524 0.98313 0.98203 1.21757 0.93661 0.93480 0.88520 0.89221 1.22509 0.95552 0.99710 0.98883 1.21868 0.98424 1.00349 0.95139 1.21091 0.90578 0.91859 0.93731 0.90948 1.22828 0.86802 0.98017 0.99074 1.48861 1.33979 1.18922 1.31327 1.19619 0.83873 0.78297 0.82725 1.90683 1.54969 1.67392 1.26648 1.23207 0.98683 1.00794 1.03531 1.84784 1.44802 1.17633 1.44355 1.22322 1.16681 1.08987 1.18635 0.89508 1.24689 0.93916 0.96133 0.96476 1.69941 1.22949 1.19248 1.39778 0.86750 0.82600 0.79618 0.82986 1.19227 1.20022 1.15907 0.91584 0.90796 0.90966 0.89320 0.90213 0.95339 0.90379 0.91547 0.93687 0.90831 0.91082 0.90797 0.90201 0.90398 0.90409 0.94147 0.89895 0.88760 0.89085 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 9.65 37.16 0.36 -1.08 16 2 C 0.09 0.83 3.96 -26.73 -0.11 0.72 16 3 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 4 F -0.21 -2.70 16.76 2.25 0.04 -2.66 16 5 C -0.15 -1.44 4.95 -26.73 -0.13 -1.58 16 6 C 0.06 0.63 4.80 -3.82 -0.02 0.61 16 7 N -0.54 -6.08 3.83 -233.59 -0.89 -6.97 16 8 C 0.06 0.55 4.90 -4.36 -0.02 0.53 16 9 C -0.13 -1.28 5.12 -27.14 -0.14 -1.42 16 10 C 0.13 1.39 3.44 -66.49 -0.23 1.17 16 11 H 0.09 0.98 7.71 -51.93 -0.40 0.58 16 12 C -0.13 -0.98 5.88 -25.69 -0.15 -1.13 16 13 C -0.12 -0.95 6.05 -27.09 -0.16 -1.12 16 14 C 0.13 1.53 2.61 -67.74 -0.18 1.35 16 15 H 0.07 0.96 8.03 -51.92 -0.42 0.54 16 16 C 0.06 0.67 5.37 -2.71 -0.01 0.66 16 17 N -0.60 -8.47 2.22 -156.12 -0.35 -8.82 16 18 C 0.57 10.88 7.95 -10.99 -0.09 10.79 16 19 O -0.52 -12.00 16.28 5.56 0.09 -11.91 16 20 C -0.11 -2.30 5.31 36.01 0.19 -2.11 16 21 S -0.14 -3.73 18.55 -107.50 -1.99 -5.72 16 22 C -0.52 -15.21 10.04 30.94 0.31 -14.90 16 23 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 24 C 0.10 2.86 5.50 -17.43 -0.10 2.76 16 25 N -0.88 -26.94 13.97 55.49 0.78 -26.17 16 26 Si 0.86 22.26 27.74 -169.99 -4.71 17.55 16 27 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.24 -6.13 6.74 56.52 0.38 -5.75 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.08 0.67 6.43 -51.93 -0.33 0.33 16 35 H 0.03 0.25 8.12 -51.93 -0.42 -0.17 16 36 H 0.08 0.94 7.78 -51.93 -0.40 0.54 16 37 H 0.07 0.53 5.93 -51.93 -0.31 0.22 16 38 H 0.04 0.35 5.49 -51.93 -0.28 0.07 16 39 H 0.07 0.91 7.70 -51.93 -0.40 0.51 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.49 6.54 -51.93 -0.34 0.15 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.49 7.59 -51.93 -0.39 0.09 16 45 H 0.04 0.36 7.64 -51.93 -0.40 -0.04 16 46 H 0.08 1.07 8.05 -51.93 -0.42 0.65 16 47 H 0.09 1.86 7.70 -51.92 -0.40 1.46 16 48 H 0.09 1.76 8.01 -51.92 -0.42 1.35 16 49 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 390.00 15.07 5.88 5.88 Total: -1.00 -34.93 390.00 -9.94 -44.87 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -8.29 Total: -1.30 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -0.47 Total: -4.74 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: -0.47 Total: -41.96 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.55 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -1.99 Total: -5.72 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.93 -9.94 -44.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670947242.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.493 kcal (2) G-P(sol) polarization free energy of solvation -34.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds